Ggra5189.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5189.t1
Unique NameGgra5189.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length352
Homology
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BLAST of Ggra5189.t1 vs. uniprot
Match: A0A2V3JCI2 (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JCI2_9FLOR)

HSP 1 Score: 423 bits (1088), Expect = 5.680e-145
Identity = 229/375 (61.07%), Postives = 273/375 (72.80%), Query Frame = 0 
Query:    1 MAESFDLPEWLLDTERAEPLRLPHALAQLLELELQPSVTQA-------------------------VSALTDTNAPPIVVKKSSPQRLPRRTSVFPSPQHALSKSRRQQPPDSRQRHNEMMRKNRHKFNAKFEQLATLLRSYELPATSYKPMKNKIQTLERAIFQYALMQTNNARFRSMLTFAPDATPLVVSEYARTFAAMPSLSQACEQLLSHLCATQDWKYAEVWIRDASQQDCYSYTLRHALVPPNNMPDTRARLSRFAAVTKTSAPDPFLLSQAAFPAPVWIPDLSKQRANSSRARHAATAGITTMLITPVFMSATTNGVVKTMPDAILTLMHANDELLSFTNLIRPYHSATITELLYMVSALVKSRSSPS 350
            MA++FD+P+WLLD+ER +PLR       LL+L +  +V                            +S+LTD       VK +SPQRLPRRTS FPSP   L K+RRQQPPDSRQRHNEMMRKNRHKFNAKFEQLA LLRS+ELP T YKPMKNKIQTLERAIFQYA MQ NNARFRS L+FAPDATP ++ EYAR  +A PSL  AC+ +L+H+CA  DWKYAE+W+RD++Q +CYS++L H L+P NNMP+TR+ LSRFA  +     DPFLLSQAAF +PVWIPD+SKQR+NS RAR AATAGITT +I PV   A ++  V   P AILTLMHANDELLSF NL+RPY SAT+ +LL++VSAL KS  S S
Sbjct:    1 MADTFDIPDWLLDSERPDPLRPSLTFMNLLDLGMDSAVAHLNNVNSNAXXXXXXXXXXNTATPPPPISSLTDVTTT-TDVKNASPQRLPRRTSTFPSPHQTLVKARRQQPPDSRQRHNEMMRKNRHKFNAKFEQLAQLLRSFELPNTPYKPMKNKIQTLERAIFQYATMQRNNARFRSTLSFAPDATPALICEYARILSAAPSLPVACQHMLAHMCAAHDWKYAELWLRDSTQPNCYSFSLAHTLIPLNNMPETRSALSRFATDSNNVPLDPFLLSQAAFSSPVWIPDMSKQRSNSCRARMAATAGITTAIIIPV---AGSDAAVGQFPHAILTLMHANDELLSFANLMRPYDSATMIDLLHLVSALAKSHCSAS 371
The following BLAST results are available for this feature:
BLAST of Ggra5189.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3JCI25.680e-14561.07BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 78..158
e-value: 4.1E-5
score: 25.4
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 79..140
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 89..138
e-value: 8.7E-5
score: 22.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:712401..713456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5189.t1Ggra5189.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 712401..713456 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5189.t1 ID=Ggra5189.t1|Name=Ggra5189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MAESFDLPEWLLDTERAEPLRLPHALAQLLELELQPSVTQAVSALTDTNA
PPIVVKKSSPQRLPRRTSVFPSPQHALSKSRRQQPPDSRQRHNEMMRKNR
HKFNAKFEQLATLLRSYELPATSYKPMKNKIQTLERAIFQYALMQTNNAR
FRSMLTFAPDATPLVVSEYARTFAAMPSLSQACEQLLSHLCATQDWKYAE
VWIRDASQQDCYSYTLRHALVPPNNMPDTRARLSRFAAVTKTSAPDPFLL
SQAAFPAPVWIPDLSKQRANSSRARHAATAGITTMLITPVFMSATTNGVV
KTMPDAILTLMHANDELLSFTNLIRPYHSATITELLYMVSALVKSRSSPS
S*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom