Ggra5189.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5189.t1
Unique Name	Ggra5189.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:712401..713456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5189	Ggra5189	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 712401..713456 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5189.t1.start1	Ggra5189.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 712401..712403 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5189.t1.CDS1	Ggra5189.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 712401..713456 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5189.t1.exon1	Ggra5189.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 712401..713456 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5189.t1.stop1	Ggra5189.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 713454..713456 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5189.t1	Ggra5189.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 712401..713456 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:712401..713456+
coding sequence from alignment at tig00000069_pilon:712401..713456+

mRNA sequence

>Ggra5189.t1 ID=Ggra5189.t1|Name=Ggra5189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MAESFDLPEWLLDTERAEPLRLPHALAQLLELELQPSVTQAVSALTDTNA
PPIVVKKSSPQRLPRRTSVFPSPQHALSKSRRQQPPDSRQRHNEMMRKNR
HKFNAKFEQLATLLRSYELPATSYKPMKNKIQTLERAIFQYALMQTNNAR
FRSMLTFAPDATPLVVSEYARTFAAMPSLSQACEQLLSHLCATQDWKYAE
VWIRDASQQDCYSYTLRHALVPPNNMPDTRARLSRFAAVTKTSAPDPFLL
SQAAFPAPVWIPDLSKQRANSSRARHAATAGITTMLITPVFMSATTNGVV
KTMPDAILTLMHANDELLSFTNLIRPYHSATITELLYMVSALVKSRSSPS
S*

spliced messenger RNA

>Ggra5189.t1 ID=Ggra5189.t1|Name=Ggra5189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000069_pilon:712401..713456+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGTCGTTCGACTTGCCCGAGTGGTTGCTGGATACTGAACGAGC
CGAACCGTTGAGATTGCCTCACGCCCTCGCTCAGTTGCTGGAGTTGGAAC
TCCAGCCTTCCGTCACTCAAGCTGTCTCCGCTCTCACCGACACCAACGCG
CCCCCCATCGTGGTCAAAAAGTCTTCGCCGCAGCGCCTGCCTCGCAGGAC
CTCGGTGTTCCCGTCGCCGCAACATGCTCTTTCCAAGTCCCGCCGCCAAC
AGCCGCCCGATTCTCGTCAGCGTCATAATGAGATGATGCGCAAGAACCGC
CACAAGTTCAACGCTAAATTTGAACAGCTCGCTACTCTTCTTCGCTCATA
CGAACTGCCAGCTACTTCGTACAAGCCAATGAAGAACAAGATTCAAACGC
TTGAACGAGCAATCTTTCAGTACGCGCTCATGCAAACAAACAACGCCCGT
TTTCGTTCCATGCTCACATTCGCTCCTGATGCCACCCCGCTTGTTGTGTC
CGAGTATGCTCGAACATTCGCTGCCATGCCCTCACTCTCACAAGCCTGTG
AACAACTCTTGTCTCATCTATGTGCTACACAAGATTGGAAGTATGCCGAG
GTTTGGATTCGGGACGCATCGCAACAAGATTGTTACAGCTACACTCTGAG
ACATGCCTTGGTCCCACCAAACAACATGCCGGACACCCGCGCTCGTCTGT
CACGCTTTGCCGCCGTCACCAAGACCAGTGCGCCTGATCCCTTTTTGTTA
TCGCAAGCCGCGTTCCCAGCACCTGTGTGGATCCCCGACTTGTCCAAACA
ACGAGCCAACAGTAGTCGAGCGCGCCATGCAGCCACAGCTGGTATCACTA
CAATGCTCATAACACCCGTATTTATGAGTGCTACCACTAATGGTGTTGTT
AAAACCATGCCGGATGCTATTCTTACTCTCATGCACGCTAATGATGAACT
CTTATCGTTTACTAATTTGATTCGACCGTATCACTCGGCTACTATTACCG
AGCTGCTGTATATGGTTTCGGCGCTTGTCAAATCGCGTTCTAGTCCATCG
TCGTAA

protein sequence of Ggra5189.t1

>Ggra5189.t1 ID=Ggra5189.t1|Name=Ggra5189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MAESFDLPEWLLDTERAEPLRLPHALAQLLELELQPSVTQAVSALTDTNA
PPIVVKKSSPQRLPRRTSVFPSPQHALSKSRRQQPPDSRQRHNEMMRKNR
HKFNAKFEQLATLLRSYELPATSYKPMKNKIQTLERAIFQYALMQTNNAR
FRSMLTFAPDATPLVVSEYARTFAAMPSLSQACEQLLSHLCATQDWKYAE
VWIRDASQQDCYSYTLRHALVPPNNMPDTRARLSRFAAVTKTSAPDPFLL
SQAAFPAPVWIPDLSKQRANSSRARHAATAGITTMLITPVFMSATTNGVV
KTMPDAILTLMHANDELLSFTNLIRPYHSATITELLYMVSALVKSRSSPS
S*

mRNA from alignment at tig00000069_pilon:712401..713456+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5189.t1 ID=Ggra5189.t1|Name=Ggra5189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000069_pilon:712401..713456+ (Gracilaria gracilis GNS1m male)
ATGGCGGAGTCGTTCGACTTGCCCGAGTGGTTGCTGGATACTGAACGAGC
CGAACCGTTGAGATTGCCTCACGCCCTCGCTCAGTTGCTGGAGTTGGAAC
TCCAGCCTTCCGTCACTCAAGCTGTCTCCGCTCTCACCGACACCAACGCG
CCCCCCATCGTGGTCAAAAAGTCTTCGCCGCAGCGCCTGCCTCGCAGGAC
CTCGGTGTTCCCGTCGCCGCAACATGCTCTTTCCAAGTCCCGCCGCCAAC
AGCCGCCCGATTCTCGTCAGCGTCATAATGAGATGATGCGCAAGAACCGC
CACAAGTTCAACGCTAAATTTGAACAGCTCGCTACTCTTCTTCGCTCATA
CGAACTGCCAGCTACTTCGTACAAGCCAATGAAGAACAAGATTCAAACGC
TTGAACGAGCAATCTTTCAGTACGCGCTCATGCAAACAAACAACGCCCGT
TTTCGTTCCATGCTCACATTCGCTCCTGATGCCACCCCGCTTGTTGTGTC
CGAGTATGCTCGAACATTCGCTGCCATGCCCTCACTCTCACAAGCCTGTG
AACAACTCTTGTCTCATCTATGTGCTACACAAGATTGGAAGTATGCCGAG
GTTTGGATTCGGGACGCATCGCAACAAGATTGTTACAGCTACACTCTGAG
ACATGCCTTGGTCCCACCAAACAACATGCCGGACACCCGCGCTCGTCTGT
CACGCTTTGCCGCCGTCACCAAGACCAGTGCGCCTGATCCCTTTTTGTTA
TCGCAAGCCGCGTTCCCAGCACCTGTGTGGATCCCCGACTTGTCCAAACA
ACGAGCCAACAGTAGTCGAGCGCGCCATGCAGCCACAGCTGGTATCACTA
CAATGCTCATAACACCCGTATTTATGAGTGCTACCACTAATGGTGTTGTT
AAAACCATGCCGGATGCTATTCTTACTCTCATGCACGCTAATGATGAACT
CTTATCGTTTACTAATTTGATTCGACCGTATCACTCGGCTACTATTACCG
AGCTGCTGTATATGGTTTCGGCGCTTGTCAAATCGCGTTCTAGTCCATCG
TCGTAA

Coding sequence (CDS) from alignment at tig00000069_pilon:712401..713456+

>Ggra5189.t1 ID=Ggra5189.t1|Name=Ggra5189.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000069_pilon:712401..713456+ (Gracilaria gracilis GNS1m male)
ATGGCGGAGTCGTTCGACTTGCCCGAGTGGTTGCTGGATACTGAACGAGC
CGAACCGTTGAGATTGCCTCACGCCCTCGCTCAGTTGCTGGAGTTGGAAC
TCCAGCCTTCCGTCACTCAAGCTGTCTCCGCTCTCACCGACACCAACGCG
CCCCCCATCGTGGTCAAAAAGTCTTCGCCGCAGCGCCTGCCTCGCAGGAC
CTCGGTGTTCCCGTCGCCGCAACATGCTCTTTCCAAGTCCCGCCGCCAAC
AGCCGCCCGATTCTCGTCAGCGTCATAATGAGATGATGCGCAAGAACCGC
CACAAGTTCAACGCTAAATTTGAACAGCTCGCTACTCTTCTTCGCTCATA
CGAACTGCCAGCTACTTCGTACAAGCCAATGAAGAACAAGATTCAAACGC
TTGAACGAGCAATCTTTCAGTACGCGCTCATGCAAACAAACAACGCCCGT
TTTCGTTCCATGCTCACATTCGCTCCTGATGCCACCCCGCTTGTTGTGTC
CGAGTATGCTCGAACATTCGCTGCCATGCCCTCACTCTCACAAGCCTGTG
AACAACTCTTGTCTCATCTATGTGCTACACAAGATTGGAAGTATGCCGAG
GTTTGGATTCGGGACGCATCGCAACAAGATTGTTACAGCTACACTCTGAG
ACATGCCTTGGTCCCACCAAACAACATGCCGGACACCCGCGCTCGTCTGT
CACGCTTTGCCGCCGTCACCAAGACCAGTGCGCCTGATCCCTTTTTGTTA
TCGCAAGCCGCGTTCCCAGCACCTGTGTGGATCCCCGACTTGTCCAAACA
ACGAGCCAACAGTAGTCGAGCGCGCCATGCAGCCACAGCTGGTATCACTA
CAATGCTCATAACACCCGTATTTATGAGTGCTACCACTAATGGTGTTGTT
AAAACCATGCCGGATGCTATTCTTACTCTCATGCACGCTAATGATGAACT
CTTATCGTTTACTAATTTGATTCGACCGTATCACTCGGCTACTATTACCG
AGCTGCTGTATATGGTTTCGGCGCTTGTCAAATCGCGTTCTAGTCCATCG
TCGTAA