Ggra4966.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4966.t1
Unique NameGgra4966.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Homology
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A2V3IEF9 (30S ribosomal protein S18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEF9_9FLOR)

HSP 1 Score: 321 bits (823), Expect = 6.560e-107
Identity = 172/269 (63.94%), Postives = 209/269 (77.70%), Query Frame = 0
Query:   27 RALASSGDSSGP--NDTEVDSEKHPVDGFFDEENIADLSPLEVARMRVTYGLVKEHTDAIEKGLPGIDPDSNPLIDPRSFHIRTLPEFPPEVLKQFRKEIPPNVAAESRSVSTYNLWESIQSGETHELLEEHKETKDNEWTAVDERTMPAGQYSRLHRQSVTSRTGISMRTPATAAQPTPFTTKKMKKGDCPLKDERGRSRVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALLDPEPIPRLTVEEMTEIERHL 293
            RALA+  +  G   N+ +  +     DGFF EENI+DLSPLEVARMRVTYGL+KEH +AIEKGL  +DP+SNPLIDPRSF  R LP+ P EVL+QFRKE+PP VAAESR VSTYNLWE++QSGETHELLEE    +D  W+AVDERTM    Y++L RQ+V    G  + + A +A       +KM K +C LKD+RGRS VDFRAV ++KA+LSDNLKILPR+KSGLCAKSQRKLA+AVKTAR+MALL+PEPIP LTVEEM ++E++L
Sbjct:   28 RALATDNNEPGSELNERKERANADKSDGFFSEENISDLSPLEVARMRVTYGLLKEHVEAIEKGLEDVDPESNPLIDPRSFQTRKLPQIPKEVLEQFRKEVPPEVAAESRVVSTYNLWEALQSGETHELLEEQSTQED--WSAVDERTMDTRSYTKLQRQAVL---GQKVPSHAPSAAMNYMAKRKMNKSECALKDDRGRSVVDFRAVESMKAYLSDNLKILPRRKSGLCAKSQRKLARAVKTARSMALLNPEPIPELTVEEMRDMEKNL 291          
BLAST of Ggra4966.t1 vs. uniprot
Match: R7QE34 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE34_CHOCR)

HSP 1 Score: 226 bits (576), Expect = 7.980e-69
Identity = 118/253 (46.64%), Postives = 169/253 (66.80%), Query Frame = 0
Query:   38 PNDTEVDSEKHPVDGFFDEENIADLSPLEVARMRVTYGLVKEHTDAIEKGLPGIDPDSNPLIDPRSFHIRTLPEFPPEVLKQFRKEIPPNVAAESRSVSTYNLWESIQS--GETHELLEEHKETKDNEWTAVDERTMPAGQYSRLHRQSVTSRTGISMRTPATAAQPTPFTTKKMKKGDCPLKDERGRSRVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALLDPEPIPRLTVEEMTE 288
            P+   +D  ++  +  F  EN   ++P E++RMRV YGL+KEH +A+E+   G+DP +NPL+DPRSF +R +P+ P EVL+QFR+++P  VA+ SR VST  +W+++ S  G    +  E  +    EW  VDERTM + Q+SR+ RQS  S   +  R     A P     +K KK  CPL+DERGR +VDFRA GTL+ +L++  KI+P++KSGL AK+QRKL+KA+KTARTMA++  EP   LT EE+T+
Sbjct:   81 PSSGSLDRRENDRESLFSRENTEGIAPGELSRMRVAYGLLKEHVEALEQDFDGVDPHTNPLLDPRSFDVRKMPKLPKEVLEQFRRDLPAEVASSSRPVSTRGIWDALSSSSGAAGAMSPELHDENAAEWAVVDERTMDSQQFSRMQRQSFRSTVDVPFR-----ADPLSAVRRKRKKKSCPLQDERGRVKVDFRAGGTLRPYLTEGGKIIPKRKSGLSAKAQRKLSKAIKTARTMAIIAREPRGTLTYEELTQ 328          
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A7V5UTM2 (30S ribosomal protein S18 n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5UTM2_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.080e-8
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0
Query:  226 VDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 273
            +D++ V TLK FL  + ++LPRKK+GLCA+ QRKL +A+K AR MALL
Sbjct:   14 IDYKEVETLKKFLDSHARVLPRKKTGLCARHQRKLTRAIKNARIMALL 61          
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A1G1YGH5 (30S ribosomal protein S18 n=2 Tax=Candidatus Buchananbacteria TaxID=1817903 RepID=A0A1G1YGH5_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.870e-8
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0
Query:  226 VDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 273
            +D++   TL+ F+S   KI+PRK+SG+CAK QRKLA A+K ARTMALL
Sbjct:   24 IDYKDTQTLRRFISSYAKIVPRKRSGVCAKHQRKLANAIKRARTMALL 71          
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A7V5D214 (30S ribosomal protein S18 n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A7V5D214_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.830e-8
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0
Query:  220 ERGRSRVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 273
            +R    +DFR+   LK FLS + KI PRKK+G+CA  QRKLAKA+K AR M LL
Sbjct:    8 QRNIKEIDFRSAEVLKRFLSPSQKIKPRKKTGVCAFHQRKLAKAIKRARQMGLL 61          
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A2H5YDF0 (30S ribosomal protein S18 n=1 Tax=bacterium HR23 TaxID=2035418 RepID=A0A2H5YDF0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 6.000e-8
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0
Query:  195 TPATAAQPTPFTTKKMK-------KGDCPLKDERGRSRVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 273
            TP+  AQ T    KK +       K  CP   E+G + +D++ +  LK F+ + +KI PR+K+G+CAK QR+LA A+K AR +ALL
Sbjct:   10 TPSATAQATGAQRKKARRRYYPPRKKACPFCVEKGLA-IDYKNIPLLKRFIGEQMKIEPRRKTGVCAKHQRRLATAIKRARHLALL 94          
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A1F7UTC3 (30S ribosomal protein S18 n=1 Tax=Candidatus Uhrbacteria bacterium RIFCSPLOWO2_01_FULL_47_24 TaxID=1802401 RepID=A0A1F7UTC3_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 6.100e-8
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0
Query:  227 DFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALLDPEP 277
            DF+ V  LK F+S  +KI+P+++SGLCAK QRK+A+A+K ART+AL+   P
Sbjct:   20 DFKDVNLLKRFVSAGMKIMPQRRSGLCAKHQRKVARAIKHARTLALMPYMP 70          
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A0U3G3L8 (30S ribosomal protein S18 n=6 Tax=Eubacteriales TaxID=186802 RepID=A0A0U3G3L8_EUBLI)

HSP 1 Score: 58.5 bits (140), Expect = 9.300e-8
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:  220 ERGRSRVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 273
            ER  + VD++ V TLK ++S+  KILPR+ +G CAK QRK+ +AVK AR +ALL
Sbjct:   16 ERHETEVDYKDVATLKKYISERGKILPRRATGTCAKHQRKVTEAVKRARNIALL 69          
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A3N5T487 (30S ribosomal protein S18 n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A3N5T487_9SPIO)

HSP 1 Score: 59.3 bits (142), Expect = 9.330e-8
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 0
Query:  222 GRSRVDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 273
            G+ +VD++ +GT++ F+SD  KILPR+ +G CAK QRK+++AVK AR +A+L
Sbjct:   43 GKVKVDYKDIGTIRKFVSDRGKILPRRITGTCAKHQRKVSQAVKRARVIAIL 94          
BLAST of Ggra4966.t1 vs. uniprot
Match: A0A7C4Y619 (30S ribosomal protein S18 n=1 Tax=Caldisericum exile TaxID=693075 RepID=A0A7C4Y619_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.110e-7
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0
Query:  226 VDFRAVGTLKAFLSDNLKILPRKKSGLCAKSQRKLAKAVKTARTMALL 273
            +D++ V  L  F+S+  KILPR+ +GLCAK QR+LA+A+K ARTMALL
Sbjct:   30 IDYKDVSKLSRFISEKGKILPRRNTGLCAKHQRQLARAIKRARTMALL 77          
The following BLAST results are available for this feature:
BLAST of Ggra4966.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEF96.560e-10763.9430S ribosomal protein S18 n=1 Tax=Gracilariopsis c... [more]
R7QE347.980e-6946.64Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7V5UTM21.080e-858.3330S ribosomal protein S18 n=1 Tax=bacterium TaxID=... [more]
A0A1G1YGH51.870e-860.4230S ribosomal protein S18 n=2 Tax=Candidatus Bucha... [more]
A0A7V5D2142.830e-857.4130S ribosomal protein S18 n=1 Tax=Candidatus Parcu... [more]
A0A2H5YDF06.000e-841.8630S ribosomal protein S18 n=1 Tax=bacterium HR23 T... [more]
A0A1F7UTC36.100e-854.9030S ribosomal protein S18 n=1 Tax=Candidatus Uhrba... [more]
A0A0U3G3L89.300e-853.7030S ribosomal protein S18 n=6 Tax=Eubacteriales Ta... [more]
A0A3N5T4879.330e-851.9230S ribosomal protein S18 n=1 Tax=Spirochaetaceae ... [more]
A0A7C4Y6191.110e-758.3330S ribosomal protein S18 n=1 Tax=Caldisericum exi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001648Ribosomal protein S18PRINTSPR00974RIBOSOMALS18coord: 233..243
score: 36.36
coord: 243..250
score: 50.38
coord: 265..275
score: 49.31
coord: 251..265
score: 50.3
IPR001648Ribosomal protein S18TIGRFAMTIGR00165TIGR00165coord: 211..273
e-value: 8.8E-15
score: 52.7
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 225..273
e-value: 1.1E-17
score: 63.9
IPR001648Ribosomal protein S18PANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 149..273
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10Ribosomal protein S18coord: 196..276
e-value: 8.2E-19
score: 69.4
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 212..273
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 149..273

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:186629..187770 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4966.t1Ggra4966.t1Gracilaria gracilis GNS1m malemRNAtig00000014_pilon 186629..187770 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4966.t1 ID=Ggra4966.t1|Name=Ggra4966.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MQRGVLQLTRQFLHARPAPNIHMVLRRALASSGDSSGPNDTEVDSEKHPV
DGFFDEENIADLSPLEVARMRVTYGLVKEHTDAIEKGLPGIDPDSNPLID
PRSFHIRTLPEFPPEVLKQFRKEIPPNVAAESRSVSTYNLWESIQSGETH
ELLEEHKETKDNEWTAVDERTMPAGQYSRLHRQSVTSRTGISMRTPATAA
QPTPFTTKKMKKGDCPLKDERGRSRVDFRAVGTLKAFLSDNLKILPRKKS
GLCAKSQRKLAKAVKTARTMALLDPEPIPRLTVEEMTEIERHLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
IPR036870Ribosomal_S18_sf