Ggra4966.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4966.t1
Unique NameGgra4966.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:186629..187770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog903814.ELI_4585
Preferred namerpsR
PFAMsRibosomal_S18
Max annot lvl186801|Clostridia
KEGG koko:K02963
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue2.16e-08
EggNOG OGsCOG0238@1|root,COG0238@2|Bacteria,1V9XS@1239|Firmicutes,24MQV@186801|Clostridia,25WV7@186806|Eubacteriaceae
DescriptionBinds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4966Ggra4966Gracilaria gracilis GNS1m malegenetig00000014_pilon 186629..187770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4966.t1Ggra4966.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 186629..187770 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4966.t1.start1Ggra4966.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 186629..186631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4966.t1.CDS1Ggra4966.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 186629..186807 +
Ggra4966.t1.CDS2Ggra4966.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000014_pilon 186941..187070 +
Ggra4966.t1.CDS3Ggra4966.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000014_pilon 187195..187770 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4966.t1.exon1Ggra4966.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 186629..186807 +
Ggra4966.t1.exon2Ggra4966.t1.exon2Gracilaria gracilis GNS1m maleexontig00000014_pilon 186941..187070 +
Ggra4966.t1.exon3Ggra4966.t1.exon3Gracilaria gracilis GNS1m maleexontig00000014_pilon 187195..187770 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4966.t1.intron1Ggra4966.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000014_pilon 186808..186940 +
Ggra4966.t1.intron2Ggra4966.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000014_pilon 187071..187194 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4966.t1.stop1Ggra4966.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 187768..187770 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4966.t1 ID=Ggra4966.t1|Name=Ggra4966.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MQRGVLQLTRQFLHARPAPNIHMVLRRALASSGDSSGPNDTEVDSEKHPV
DGFFDEENIADLSPLEVARMRVTYGLVKEHTDAIEKGLPGIDPDSNPLID
PRSFHIRTLPEFPPEVLKQFRKEIPPNVAAESRSVSTYNLWESIQSGETH
ELLEEHKETKDNEWTAVDERTMPAGQYSRLHRQSVTSRTGISMRTPATAA
QPTPFTTKKMKKGDCPLKDERGRSRVDFRAVGTLKAFLSDNLKILPRKKS
GLCAKSQRKLAKAVKTARTMALLDPEPIPRLTVEEMTEIERHLP*
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spliced messenger RNA

>Ggra4966.t1 ID=Ggra4966.t1|Name=Ggra4966.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000014_pilon:186629..187770+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGAGGTGTTTTGCAGCTGACTCGCCAGTTTTTGCATGCTAGGCC
TGCACCAAACATTCACATGGTGCTAAGGAGAGCGCTAGCGAGCAGCGGTG
ATTCTTCGGGACCAAATGATACGGAAGTGGACTCAGAGAAGCACCCGGTC
GATGGATTCTTTGACGAAGAAAACATAGCAGACTTGTCTCCCTTGGAAGT
TGCCCGTATGCGTGTAACCTATGGTCTTGTCAAAGAACACACGGATGCAA
TCGAGAAAGGTCTTCCAGGCATAGATCCCGATTCCAACCCGCTAATTGAC
CCTAGATCTTTTCATATTCGCACATTACCTGAATTTCCTCCAGAAGTGCT
AAAGCAGTTCCGGAAAGAAATCCCGCCTAATGTGGCTGCAGAGAGTCGTT
CCGTTTCAACATACAATTTATGGGAGTCGATACAAAGCGGAGAGACACAT
GAGCTGCTGGAAGAACACAAGGAAACTAAGGACAATGAATGGACAGCAGT
CGATGAGCGCACAATGCCTGCAGGCCAATACTCTCGGCTTCACAGACAAT
CGGTAACGAGTAGGACCGGAATATCAATGCGCACACCTGCGACCGCTGCT
CAGCCGACGCCCTTCACTACAAAGAAAATGAAGAAGGGCGACTGCCCTTT
GAAGGACGAGCGAGGAAGATCTAGAGTTGACTTTAGGGCTGTGGGAACTC
TAAAGGCATTTCTTTCGGACAACTTGAAGATTTTGCCTCGAAAGAAATCG
GGGTTGTGCGCCAAGTCGCAAAGAAAGCTAGCAAAAGCTGTCAAAACTGC
AAGAACAATGGCTTTGTTGGATCCGGAACCAATCCCAAGACTAACGGTCG
AGGAGATGACGGAGATAGAGAGACATCTTCCGTGA
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protein sequence of Ggra4966.t1

>Ggra4966.t1 ID=Ggra4966.t1|Name=Ggra4966.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MQRGVLQLTRQFLHARPAPNIHMVLRRALASSGDSSGPNDTEVDSEKHPV
DGFFDEENIADLSPLEVARMRVTYGLVKEHTDAIEKGLPGIDPDSNPLID
PRSFHIRTLPEFPPEVLKQFRKEIPPNVAAESRSVSTYNLWESIQSGETH
ELLEEHKETKDNEWTAVDERTMPAGQYSRLHRQSVTSRTGISMRTPATAA
QPTPFTTKKMKKGDCPLKDERGRSRVDFRAVGTLKAFLSDNLKILPRKKS
GLCAKSQRKLAKAVKTARTMALLDPEPIPRLTVEEMTEIERHLP*
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mRNA from alignment at tig00000014_pilon:186629..187770+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4966.t1 ID=Ggra4966.t1|Name=Ggra4966.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1142bp|location=Sequence derived from alignment at tig00000014_pilon:186629..187770+ (Gracilaria gracilis GNS1m male)
ATGCAAAGAGGTGTTTTGCAGCTGACTCGCCAGTTTTTGCATGCTAGGCC
TGCACCAAACATTCACATGGTGCTAAGGAGAGCGCTAGCGAGCAGCGGTG
ATTCTTCGGGACCAAATGATACGGAAGTGGACTCAGAGAAGCACCCGGTC
GATGGATTCTTTGACGAAGAAAACATAGCGTAAGTTACCCAGACGATCTC
TATCCAAAGAAAAGTCTCTTTTTTGTTATGAAGCATATGGATCTATACGA
AGGGTTTGACAGAACGCGATATAGCATTTGCTAACTTGTGAATGTTGTTC
TGACAATCATAGAGACTTGTCTCCCTTGGAAGTTGCCCGTATGCGTGTAA
CCTATGGTCTTGTCAAAGAACACACGGATGCAATCGAGAAAGGTCTTCCA
GGCATAGATCCCGATTCCAACCCGCTAATTGACCCTAGATCTGTACGTTG
GTTTCTCGTGTGAATCATTCTACCTTTCGACCAAACGCCTCTGTTAGTGG
AGGATGTCTAACCTCTTATATGGATTCGTTACCTCTGATATGATTCCTAA
CGCGCGCTATTCACAGTTTCATATTCGCACATTACCTGAATTTCCTCCAG
AAGTGCTAAAGCAGTTCCGGAAAGAAATCCCGCCTAATGTGGCTGCAGAG
AGTCGTTCCGTTTCAACATACAATTTATGGGAGTCGATACAAAGCGGAGA
GACACATGAGCTGCTGGAAGAACACAAGGAAACTAAGGACAATGAATGGA
CAGCAGTCGATGAGCGCACAATGCCTGCAGGCCAATACTCTCGGCTTCAC
AGACAATCGGTAACGAGTAGGACCGGAATATCAATGCGCACACCTGCGAC
CGCTGCTCAGCCGACGCCCTTCACTACAAAGAAAATGAAGAAGGGCGACT
GCCCTTTGAAGGACGAGCGAGGAAGATCTAGAGTTGACTTTAGGGCTGTG
GGAACTCTAAAGGCATTTCTTTCGGACAACTTGAAGATTTTGCCTCGAAA
GAAATCGGGGTTGTGCGCCAAGTCGCAAAGAAAGCTAGCAAAAGCTGTCA
AAACTGCAAGAACAATGGCTTTGTTGGATCCGGAACCAATCCCAAGACTA
ACGGTCGAGGAGATGACGGAGATAGAGAGACATCTTCCGTGA
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Coding sequence (CDS) from alignment at tig00000014_pilon:186629..187770+

>Ggra4966.t1 ID=Ggra4966.t1|Name=Ggra4966.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000014_pilon:186629..187770+ (Gracilaria gracilis GNS1m male)
ATGCAAAGAGGTGTTTTGCAGCTGACTCGCCAGTTTTTGCATGCTAGGCC
TGCACCAAACATTCACATGGTGCTAAGGAGAGCGCTAGCGAGCAGCGGTG
ATTCTTCGGGACCAAATGATACGGAAGTGGACTCAGAGAAGCACCCGGTC
GATGGATTCTTTGACGAAGAAAACATAGCAGACTTGTCTCCCTTGGAAGT
TGCCCGTATGCGTGTAACCTATGGTCTTGTCAAAGAACACACGGATGCAA
TCGAGAAAGGTCTTCCAGGCATAGATCCCGATTCCAACCCGCTAATTGAC
CCTAGATCTTTTCATATTCGCACATTACCTGAATTTCCTCCAGAAGTGCT
AAAGCAGTTCCGGAAAGAAATCCCGCCTAATGTGGCTGCAGAGAGTCGTT
CCGTTTCAACATACAATTTATGGGAGTCGATACAAAGCGGAGAGACACAT
GAGCTGCTGGAAGAACACAAGGAAACTAAGGACAATGAATGGACAGCAGT
CGATGAGCGCACAATGCCTGCAGGCCAATACTCTCGGCTTCACAGACAAT
CGGTAACGAGTAGGACCGGAATATCAATGCGCACACCTGCGACCGCTGCT
CAGCCGACGCCCTTCACTACAAAGAAAATGAAGAAGGGCGACTGCCCTTT
GAAGGACGAGCGAGGAAGATCTAGAGTTGACTTTAGGGCTGTGGGAACTC
TAAAGGCATTTCTTTCGGACAACTTGAAGATTTTGCCTCGAAAGAAATCG
GGGTTGTGCGCCAAGTCGCAAAGAAAGCTAGCAAAAGCTGTCAAAACTGC
AAGAACAATGGCTTTGTTGGATCCGGAACCAATCCCAAGACTAACGGTCG
AGGAGATGACGGAGATAGAGAGACATCTTCCGTGA
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