Ggra4737.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4737.t1
Unique NameGgra4737.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Homology
BLAST of Ggra4737.t1 vs. uniprot
Match: A0A2V3J392 (50S ribosomal protein L22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J392_9FLOR)

HSP 1 Score: 346 bits (887), Expect = 3.690e-118
Identity = 170/233 (72.96%), Postives = 195/233 (83.69%), Query Frame = 0
Query:    1 MLAVRASPRLFTSLRRLWHSSTPKLCAPEFIDMVDGHQDSKPVP-PKRKWPRDPRGMEIRTAKGRRLGINTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNSKAFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVRELDEELWEARVMSKYFHLKRGNNSPDDENHPIHSSTKVSWVSDLDDSFRKTRERIAGLKALVKTGD 232
            ML  R    L +S+ R  HSS PK C+PEF+D+ +   +  P+  P+ KWP DPRG EIRTAK RRLGINTSP KLNLVAKLVRNLRIEEARRQLA CKKKTAPYV ATI AAVKN++AF+LREDRLV+++AFVGKGRYLPRIRPWHGKGRYGVEHKKY+HLT+ +RELDEELWEARVM+KYFH++RG    DDENHPIHSS  VSWVSDLDDS++KTRERI GLKAL+ + D
Sbjct:    1 MLFTRTVNHLRSSIHRSLHSSAPKRCSPEFLDIAEEQSNPPPMRVPQPKWPLDPRGEEIRTAKARRLGINTSPHKLNLVAKLVRNLRIEEARRQLAGCKKKTAPYVMATIEAAVKNARAFNLREDRLVVDEAFVGKGRYLPRIRPWHGKGRYGVEHKKYAHLTVKLRELDEELWEARVMTKYFHMRRGKGLRDDENHPIHSSKLVSWVSDLDDSYKKTRERITGLKALLNSDD 233          
BLAST of Ggra4737.t1 vs. uniprot
Match: R7QPD5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPD5_CHOCR)

HSP 1 Score: 244 bits (623), Expect = 3.120e-78
Identity = 125/197 (63.45%), Postives = 149/197 (75.63%), Query Frame = 0
Query:   47 RKWPRDPRGMEIRTAKGRRLGINTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNSKAFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVRELDEELWEARVMSKYFHL--KRGNNSPD-DENHPIHSSTKVSWVSDLDDSFRKTRERIAGLKALVKTGDENVRSAQG 240
            R WP D RG EIRTAK RRLGI+TSP KLN+VAKLVR + I EA RQ+  C+KK + +V  TI AAV N++   LREDRLV+  AFVGKG+YL +IRPWHGKGRYG+EHKKY+HLT++VRELDEELWEA VM KY HL  + G N PD D NHPIH S +VSW S LD S R TR+ I GL+AL++ G+ +  SA G
Sbjct:   36 RPWPLDNRGEEIRTAKARRLGISTSPHKLNIVAKLVRGMTINEAERQMVGCRKKHSEHVWKTIAAAVTNARHAGLREDRLVVSHAFVGKGKYLRKIRPWHGKGRYGIEHKKYAHLTVLVRELDEELWEAAVMPKYIHLGYRHGENDPDHDRNHPIHKSDRVSWHSQLDVSMRATRDNIQGLRALLE-GEGDSESAPG 231          
BLAST of Ggra4737.t1 vs. uniprot
Match: A0A0K9PHT5 (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PHT5_ZOSMR)

HSP 1 Score: 88.6 bits (218), Expect = 2.410e-17
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 0
Query:   67 GINTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNSK---AFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVRELDEE 171
            GI  SP+K+NLVAKLVR +R+E+A  QL    K+ A  V   I +A  N+     FD   DRL++E+AFVGKG YL RI  +H KGR G+  + +  LT+I+RE+ EE
Sbjct:  119 GIRQSPKKVNLVAKLVRGMRVEDALLQLQVTVKRAAKTVFKVIKSARANASHNHGFD--PDRLIVEEAFVGKGMYLKRIS-YHAKGRSGIMERPHCRLTVILREITEE 223          
BLAST of Ggra4737.t1 vs. uniprot
Match: A0A834H5Y7 (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834H5Y7_RHOSS)

HSP 1 Score: 85.5 bits (210), Expect = 7.710e-17
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   67 GINTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNSKA-FDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVRELDEE 171
            GI  SP+K+NLVA LVR +R+E+A  QL    K+ +  V   IH+A  N+   + L  DRL++ +AFVGKG +L R   +HG+GR GV HK    LT++VRE+  E
Sbjct:   82 GIKQSPKKVNLVAALVRGMRVEDALLQLQVMVKRASKTVYQVIHSARANATHNYGLDPDRLLVAEAFVGKGLFLKR-ESFHGRGRSGVMHKPECRLTVVVREITPE 186          
BLAST of Ggra4737.t1 vs. uniprot
Match: A0A7I4EJQ3 (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4EJQ3_PHYPA)

HSP 1 Score: 84.3 bits (207), Expect = 3.480e-16
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 0
Query:   68 INTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNS-KAFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVREL--DEELWEARVMSKYFHLK--RGN 188
            I  SP+K+NLVA+LVR +R+++A  Q+A   K+ A  VA  + +A  N+   F + +DRL++ +AFVGK +YL R+R  HGKG+ G   +    LT++V+EL  ++E   ARV    +H K  RGN
Sbjct:   67 IKQSPKKVNLVAELVRGMRVDDALMQMAVSTKRAAKVVAKVVTSARANAIHNFGMDKDRLIVAEAFVGKDKYLKRLRI-HGKGKAGQMVRPRCRLTVVVKELSAEKEAELARVRLHKYHSKKIRGN 191          
BLAST of Ggra4737.t1 vs. uniprot
Match: D8T4I1 (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T4I1_SELML)

HSP 1 Score: 84.0 bits (206), Expect = 3.750e-16
Identity = 47/124 (37.90%), Postives = 77/124 (62.10%), Query Frame = 0
Query:   68 INTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNS-KAFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVRELD-------EELWEARVMSKYFH 183
            I  SP+K+NLVAK+VR +R+ +A  Q++   K+ A  V   +H+A  N+   +    ++L++++AFVGKG+YL RI P H +GR+G+  KK   LT+++RE+        E+L E +   KY +
Sbjct:   55 IPQSPKKMNLVAKVVRGMRVNDALIQMSVLIKRAASTVYKVLHSARANAVHNYGFDAEKLIVDEAFVGKGKYLKRIWP-HARGRFGIREKKRCRLTVLLREMTPKEEILLEKLREKQKRGKYIY 177          
BLAST of Ggra4737.t1 vs. uniprot
Match: A0A834L4W6 (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834L4W6_RHOSS)

HSP 1 Score: 83.2 bits (204), Expect = 5.340e-16
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 0
Query:   67 GINTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNSKA-FDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVRELDEE 171
            GI  SP+K NLVA LVR +R+E+A  QL    K+ +  V   IH+A  N+     L  DRL++ +AFVGKG +L R   +HG+GR GV HK    LT++VRE+  E
Sbjct:   44 GIKQSPKKANLVAALVRGMRVEDALLQLQVTVKRASKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGLFLKR-ESFHGRGRSGVMHKPECRLTVVVREITPE 148          
BLAST of Ggra4737.t1 vs. uniprot
Match: uncharacterized protein LOC116028594 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125DE0C9 (uncharacterized protein LOC116028594 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125DE0C9)

HSP 1 Score: 84.7 bits (208), Expect = 6.150e-16
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = 0
Query:   67 GINTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNSKA-FDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVRELDEE 171
            GI  SP+K+NLVA LVR +R+E+A  QL    K+ A  V   IH+A  N+   + L  DRL++ +AFVGKG YL R+  +H KGR GV  +    LT++VRE+  E
Sbjct:  119 GIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANATHNYGLDPDRLLVAEAFVGKGLYLKRVS-YHAKGRSGVMERPRCRLTVVVREITPE 223          
BLAST of Ggra4737.t1 vs. uniprot
Match: A0A7J8WQI4 (50S ribosomal protein L22, chloroplastic (Fragment) n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8WQI4_GOSAI)

HSP 1 Score: 82.8 bits (203), Expect = 9.360e-16
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 0
Query:   68 INTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNSKA-FDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVREL--DEELWEARVMSKYF 182
            I  SP+K+NLVA LVR +R+E+A  QL    K+ A  V   IH+A  N+     L  DRL++ +AFVGKG +L R+  +HGKGR G++ +    LT++VRE+  +EE   AR+    F
Sbjct:   52 IKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGLFLKRVS-YHGKGRSGIKERPECRLTVVVREMTPEEEAELARLRVSKF 168          
BLAST of Ggra4737.t1 vs. uniprot
Match: A0A2K1K7H4 (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K7H4_PHYPA)

HSP 1 Score: 84.3 bits (207), Expect = 1.090e-15
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 0
Query:   68 INTSPQKLNLVAKLVRNLRIEEARRQLAACKKKTAPYVAATIHAAVKNS-KAFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGRYGVEHKKYSHLTIIVREL--DEELWEARVMSKYFHLK--RGN 188
            I  SP+K+NLVA+LVR +R+++A  Q+A   K+ A  VA  + +A  N+   F + +DRL++ +AFVGK +YL R+R  HGKG+ G   +    LT++V+EL  ++E   ARV    +H K  RGN
Sbjct:  138 IKQSPKKVNLVAELVRGMRVDDALMQMAVSTKRAAKVVAKVVTSARANAIHNFGMDKDRLIVAEAFVGKDKYLKRLRI-HGKGKAGQMVRPRCRLTVVVKELSAEKEAELARVRLHKYHSKKIRGN 262          
The following BLAST results are available for this feature:
BLAST of Ggra4737.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3923.690e-11872.9650S ribosomal protein L22 n=1 Tax=Gracilariopsis c... [more]
R7QPD53.120e-7863.45Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A0K9PHT52.410e-1748.15Uncharacterized protein n=1 Tax=Zostera marina Tax... [more]
A0A834H5Y77.710e-1746.23Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A7I4EJQ33.480e-1642.06Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
D8T4I13.750e-1637.90Uncharacterized protein (Fragment) n=4 Tax=Selagin... [more]
A0A834L4W65.340e-1646.23Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
uncharacterized protein LOC116028594 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125DE0C96.150e-1646.23uncharacterized protein LOC116028594 n=2 Tax=Ipomo... [more]
A0A7J8WQI49.360e-1643.2250S ribosomal protein L22, chloroplastic (Fragment... [more]
A0A2K1K7H41.090e-1542.06Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036394Ribosomal protein L22/L17 superfamilyGENE3D3.90.470.10Ribosomal protein L22/L17coord: 38..187
e-value: 3.6E-28
score: 100.3
IPR036394Ribosomal protein L22/L17 superfamilySUPERFAMILY54843Ribosomal protein L22coord: 60..169
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 68..165
e-value: 2.0E-20
score: 73.0
IPR001063Ribosomal protein L22/L17CDDcd00336Ribosomal_L22coord: 60..165
e-value: 1.35454E-23
score: 89.4722
NoneNo IPR availablePANTHERPTHR13501:SF839S RIBOSOMAL PROTEIN L22, MITOCHONDRIALcoord: 53..172
IPR005727Ribosomal protein L22, bacterial/chloroplast-typePANTHERPTHR13501CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATEDcoord: 53..172
IPR018260Ribosomal protein L22/L17, conserved sitePROSITEPS00464RIBOSOMAL_L22coord: 141..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:104268..104990 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4737.t1Ggra4737.t1Gracilaria gracilis GNS1m malemRNAtig00000065_pilon 104268..104990 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4737.t1 ID=Ggra4737.t1|Name=Ggra4737.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MLAVRASPRLFTSLRRLWHSSTPKLCAPEFIDMVDGHQDSKPVPPKRKWP
RDPRGMEIRTAKGRRLGINTSPQKLNLVAKLVRNLRIEEARRQLAACKKK
TAPYVAATIHAAVKNSKAFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGR
YGVEHKKYSHLTIIVRELDEELWEARVMSKYFHLKRGNNSPDDENHPIHS
STKVSWVSDLDDSFRKTRERIAGLKALVKTGDENVRSAQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036394Ribosomal_L22/L17_sf
IPR001063Ribosomal_L22
IPR005727Ribosomal_L22_bac/chlpt-type
IPR018260Ribosomal_L22/L17_CS