Ggra4737.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4737.t1
Unique NameGgra4737.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:104268..104990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS417CT
PFAMsRibosomal_L22
Max annot lvl2759|Eukaryota
KEGG koko:K02890
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue5e-18
EggNOG OGsCOG0091@1|root,KOG1711@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4737Ggra4737Gracilaria gracilis GNS1m malegenetig00000065_pilon 104268..104990 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4737.t1.start1Ggra4737.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 104268..104270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4737.t1.CDS1Ggra4737.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 104268..104990 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4737.t1.exon1Ggra4737.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 104268..104990 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4737.t1.stop1Ggra4737.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 104988..104990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4737.t1Ggra4737.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 104268..104990 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4737.t1 ID=Ggra4737.t1|Name=Ggra4737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MLAVRASPRLFTSLRRLWHSSTPKLCAPEFIDMVDGHQDSKPVPPKRKWP
RDPRGMEIRTAKGRRLGINTSPQKLNLVAKLVRNLRIEEARRQLAACKKK
TAPYVAATIHAAVKNSKAFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGR
YGVEHKKYSHLTIIVRELDEELWEARVMSKYFHLKRGNNSPDDENHPIHS
STKVSWVSDLDDSFRKTRERIAGLKALVKTGDENVRSAQG*
back to top

spliced messenger RNA

>Ggra4737.t1 ID=Ggra4737.t1|Name=Ggra4737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000065_pilon:104268..104990+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCCGTTCGAGCGAGTCCTCGCCTTTTCACATCGCTTCGACGCCT
GTGGCACTCTTCTACACCGAAACTATGCGCCCCTGAATTCATCGATATGG
TTGATGGCCATCAAGACTCGAAGCCAGTGCCTCCGAAGCGAAAATGGCCT
CGAGACCCACGCGGGATGGAGATCCGAACAGCGAAGGGCCGCCGATTGGG
CATCAATACTTCCCCACAAAAGCTTAATCTTGTTGCGAAGCTTGTCCGCA
ATTTGCGAATCGAGGAAGCACGTCGCCAGCTTGCTGCTTGCAAGAAAAAG
ACTGCCCCTTATGTTGCGGCAACCATTCACGCAGCAGTCAAGAACTCGAA
GGCATTCGATCTGCGCGAAGATCGTCTCGTCATCGAACAAGCGTTTGTTG
GGAAAGGCCGATATCTACCTCGCATTCGACCGTGGCATGGGAAAGGCCGA
TATGGAGTTGAACATAAAAAGTATTCGCACCTCACTATTATAGTTAGGGA
GCTTGATGAGGAGCTTTGGGAGGCCAGAGTAATGTCCAAATACTTTCATC
TGAAGAGAGGGAACAATAGCCCGGATGATGAAAACCACCCCATTCATTCA
AGCACAAAAGTGAGCTGGGTTAGCGATCTGGATGACAGCTTCCGGAAAAC
AAGAGAAAGGATCGCAGGTCTGAAAGCGCTTGTGAAGACTGGGGATGAAA
ATGTTCGTTCCGCTCAAGGTTGA
back to top

protein sequence of Ggra4737.t1

>Ggra4737.t1 ID=Ggra4737.t1|Name=Ggra4737.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MLAVRASPRLFTSLRRLWHSSTPKLCAPEFIDMVDGHQDSKPVPPKRKWP
RDPRGMEIRTAKGRRLGINTSPQKLNLVAKLVRNLRIEEARRQLAACKKK
TAPYVAATIHAAVKNSKAFDLREDRLVIEQAFVGKGRYLPRIRPWHGKGR
YGVEHKKYSHLTIIVRELDEELWEARVMSKYFHLKRGNNSPDDENHPIHS
STKVSWVSDLDDSFRKTRERIAGLKALVKTGDENVRSAQG*
back to top

mRNA from alignment at tig00000065_pilon:104268..104990+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4737.t1 ID=Ggra4737.t1|Name=Ggra4737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000065_pilon:104268..104990+ (Gracilaria gracilis GNS1m male)
ATGCTTGCCGTTCGAGCGAGTCCTCGCCTTTTCACATCGCTTCGACGCCT
GTGGCACTCTTCTACACCGAAACTATGCGCCCCTGAATTCATCGATATGG
TTGATGGCCATCAAGACTCGAAGCCAGTGCCTCCGAAGCGAAAATGGCCT
CGAGACCCACGCGGGATGGAGATCCGAACAGCGAAGGGCCGCCGATTGGG
CATCAATACTTCCCCACAAAAGCTTAATCTTGTTGCGAAGCTTGTCCGCA
ATTTGCGAATCGAGGAAGCACGTCGCCAGCTTGCTGCTTGCAAGAAAAAG
ACTGCCCCTTATGTTGCGGCAACCATTCACGCAGCAGTCAAGAACTCGAA
GGCATTCGATCTGCGCGAAGATCGTCTCGTCATCGAACAAGCGTTTGTTG
GGAAAGGCCGATATCTACCTCGCATTCGACCGTGGCATGGGAAAGGCCGA
TATGGAGTTGAACATAAAAAGTATTCGCACCTCACTATTATAGTTAGGGA
GCTTGATGAGGAGCTTTGGGAGGCCAGAGTAATGTCCAAATACTTTCATC
TGAAGAGAGGGAACAATAGCCCGGATGATGAAAACCACCCCATTCATTCA
AGCACAAAAGTGAGCTGGGTTAGCGATCTGGATGACAGCTTCCGGAAAAC
AAGAGAAAGGATCGCAGGTCTGAAAGCGCTTGTGAAGACTGGGGATGAAA
ATGTTCGTTCCGCTCAAGGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000065_pilon:104268..104990+

>Ggra4737.t1 ID=Ggra4737.t1|Name=Ggra4737.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000065_pilon:104268..104990+ (Gracilaria gracilis GNS1m male)
ATGCTTGCCGTTCGAGCGAGTCCTCGCCTTTTCACATCGCTTCGACGCCT
GTGGCACTCTTCTACACCGAAACTATGCGCCCCTGAATTCATCGATATGG
TTGATGGCCATCAAGACTCGAAGCCAGTGCCTCCGAAGCGAAAATGGCCT
CGAGACCCACGCGGGATGGAGATCCGAACAGCGAAGGGCCGCCGATTGGG
CATCAATACTTCCCCACAAAAGCTTAATCTTGTTGCGAAGCTTGTCCGCA
ATTTGCGAATCGAGGAAGCACGTCGCCAGCTTGCTGCTTGCAAGAAAAAG
ACTGCCCCTTATGTTGCGGCAACCATTCACGCAGCAGTCAAGAACTCGAA
GGCATTCGATCTGCGCGAAGATCGTCTCGTCATCGAACAAGCGTTTGTTG
GGAAAGGCCGATATCTACCTCGCATTCGACCGTGGCATGGGAAAGGCCGA
TATGGAGTTGAACATAAAAAGTATTCGCACCTCACTATTATAGTTAGGGA
GCTTGATGAGGAGCTTTGGGAGGCCAGAGTAATGTCCAAATACTTTCATC
TGAAGAGAGGGAACAATAGCCCGGATGATGAAAACCACCCCATTCATTCA
AGCACAAAAGTGAGCTGGGTTAGCGATCTGGATGACAGCTTCCGGAAAAC
AAGAGAAAGGATCGCAGGTCTGAAAGCGCTTGTGAAGACTGGGGATGAAA
ATGTTCGTTCCGCTCAAGGTTGA
back to top