Ggra4643.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4643.t1
Unique NameGgra4643.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Homology
BLAST of Ggra4643.t1 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 261 bits (666), Expect = 8.410e-81
Identity = 147/355 (41.41%), Postives = 209/355 (58.87%), Query Frame = 0
Query:    1 MVVIPLKSQFVSLIVTSISGASELALLSAAQGWNTFLECRTLARGETINVRRHRFHTRLLVIFATIVFLFLELFNSFFSDPAIVTRSESRPCISLRPISEQRATSNISSPSNIIFLECLGTNITTTWQSGGNLFEMED--------DDFIVQCEER--LYEFDRLVPEDEPLPESGYVQGCADAPSNETFCVFVYRDGNRVTFTEHVHQQNIPAATEPNVNLGVWHTVVHYNVTGLEEEFAERAAQAFVASNVQEVAIRRQVFSGDGQGDCQFRVDIDATDMSLVLVCALGAVWVVSVALFGASLFFRRQNFFDMNDPLHWAQLTGADDDMLGANNPLVATSDLSGRRRIVISMS 345
            MV+IPLKSQ+ SLIVT ISG +ELALLSA   +N +LECR L  G  +NVR HRF T+ L + AT+ F+FLE+F+SF+SDP   T    + C SL  ++ Q+   NIS+ + ++ ++C+G N T  WQ  GN+ +  +        DD + +CE++  LY  +     DEP+P+  YV GC       T CVFVYR GN VTFT+ VH +++      ++ L VW T + YNVTGLE  FA RA             +RR VF+G     C F+   DAT +    + A+   W +S++ F  S   RR+ F+DM+DPLHWAQ T  D+D+   +NP+V T   +G R ++++ S
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDE-YVVGCVG-----TSCVFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKTFSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRS 349          
BLAST of Ggra4643.t1 vs. uniprot
Match: A0A2V3ISI7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 236 bits (603), Expect = 1.780e-71
Identity = 137/346 (39.60%), Postives = 202/346 (58.38%), Query Frame = 0
Query:    1 MVVIPLKSQFVSLIVTSISGASELALLSAAQGWNTFLECRTLARGETINVRRHRFHTRLLVIFATIVFLFLELFNSFFSDPAIVTRSESRPCISLRPISEQRATSNISSPSNIIFLECLGTNITTTWQSGGNLFEMEDDDFIVQC-EERLYEFDRLVPEDEPLPESGYVQGCADAPSNETFCVFVYRDGNRVTFTEHVHQQNIPAATEPNVNLGVWHTVVHYNVTGLEEEFAERAAQAFVASNVQEVAIRRQVFSGDGQGDCQFRVDIDATDMSLVLVCALGAVWVVSVALFGASLFFRRQNFFDMNDPLHWAQLTGADDDMLGANNPLVATSDLSGRRRIVISMS 345
            MV+IPLKSQ+ SLI T +SG +ELALLSA  G+N +LECR L  G  +NVR HRF TR L + AT+ F+FLE+ NSFFSDPA+     ++ CISL  +  +R   +IS  + ++ + CLGTN +  WQ  GN+     DD  ++C ++ L+  D     +EP+P+   ++   D   N   C F+Y +G+ VTFTE V   ++    + N  L VW T V+YN TG+E E   R+          +  +RR+VF+G  + +C F V   AT +    + A+   W +S+A F  SL  R + F+DM+DPL WA+ T  D+D    +NP+V T   +G R ++++ S
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDALPIRRGMLDISLRAAVVGINCLGTNTSLLWQLAGNI----SDDGEIKCGDDFLFSADIHHSPNEPVPDEHTMECILDGELN--LCAFLYSNGSEVTFTEIVLDTDLSFVLDNNYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNFDVFSPATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVTTRYENGTRFVLVTRS 340          
BLAST of Ggra4643.t1 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 164 bits (416), Expect = 2.210e-43
Identity = 122/377 (32.36%), Postives = 179/377 (47.48%), Query Frame = 0
Query:    1 MVVIPLKSQFVSLIVTSISGASELALLSAAQGWNTFLECRTLARGETINVRRHRFHTRLLVIFATIVFLFLELFNSFFSDPAIVTRSESRPCISLRPISEQRATSNISSPSNIIFLECLGTNITTTWQSGGNLFEMEDDDFIVQC-EERLYEFDRLVPEDEPLP------------ESGYVQGC-------ADAPSNETFCVFVYR-DGNRVTFTE-----HVHQQNIPAATEPNVNLGVWHTVVHYNVTGLEEEFAERAAQAFVASNVQEVAIRRQVFSGDGQGDCQFRV-DIDATDMSLVLVCALGAVWVVSVALFGASLFFRRQNFFDMNDPLHWAQLTGADDDMLGANNPLVATSDLSGRRRIVISMSQKTED 350
            MV IPLKSQFVSLIVT ISG +EL L  A  G+N + EC  L +G  ++VR HR   + L + A +VF+FLE+  SFFSDPAI  +  +  C+++  I  +   +  ++  + I + C+G       Q  GN     +    V+C +  LYE+    P ++ L             ++  V  C        + P  E  C  V +   N + FT       V +  +       V +    T V YN +GL   FA R  +A+       + IR++VF G  +  C F     D T + L LV  + A W++S   F ++L  RR  F+DM+DPLHWAQ T    D     NP+V +    G R + +S S   +D
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEY----PNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVVTSVYEHGERLMYVSGSASNDD 373          
BLAST of Ggra4643.t1 vs. uniprot
Match: A0A2V3J5A0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 134 bits (338), Expect = 1.750e-32
Identity = 109/367 (29.70%), Postives = 177/367 (48.23%), Query Frame = 0
Query:    1 MVVIPLKSQFVSLIVTSISGASELALLSAAQGWNTFLECRTLARGETINVRRHRFHTRLLVIFATIVFLFLELFNSFFSDPAIVTRSESRPCISLRPISEQRATSNISSPSNIIFLECLGTNITTTWQSGGNLFEMEDDDFIVQCEERLYEFDRLVPE-------------DEPLPESGYVQGCADAPSNETFCVFV----YRDGNRVT---FTEHVHQQNIPAATEPNVNLGVWHTVVH--YNVTGLEEEFAERAAQAFVASNVQEVAIRRQVFSGDGQGDCQFRVDIDATDMSLVLVCALGAVWVVSVALFGASLFFRRQNFFDMNDPLHWAQLTGADDDMLGANNPLVATSDLSGRRRIVISMS 345
            MV+IPLKSQ+VSLI T IS  +EL+LL A    N + EC  L +G  ++V RH+     LV+  T  F  +EL  SF+SDPA+    +S+PC+++  ++ +      S     I L C+ TN +  +   GN + ME     V+C E       L P              + P P+   +  CAD      FCV +    Y+  +  T   F++      +      N  +   +T +    N T L  +FAER  QA+  +      +RR +F G  +  CQF+   +AT++   ++ ++  VWV+S+A +  +L   R+ F+D+++P+HWA+ T    D     +P V+    +G   + +S S
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFLRVGN-YSMETRK--VECAESATLMFTLEPHVSLPIGTAAAVSSENPFPDP--LLKCADG-----FCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQRTSEATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENGHHVMYVSGS 357          
The following BLAST results are available for this feature:
BLAST of Ggra4643.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J5C28.410e-8141.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI71.780e-7139.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT052.210e-4332.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5A01.750e-3229.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..273
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 274..297
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 298..371
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..78
NoneNo IPR availableTMHMMTMhelixcoord: 59..78
NoneNo IPR availableTMHMMTMhelixcoord: 274..296

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000061_piloncontigtig00000061_pilon:256206..257321 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4643.t1Ggra4643.t1Gracilaria gracilis GNS1m malemRNAtig00000061_pilon 256206..257321 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4643.t1 ID=Ggra4643.t1|Name=Ggra4643.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MVVIPLKSQFVSLIVTSISGASELALLSAAQGWNTFLECRTLARGETINV
RRHRFHTRLLVIFATIVFLFLELFNSFFSDPAIVTRSESRPCISLRPISE
QRATSNISSPSNIIFLECLGTNITTTWQSGGNLFEMEDDDFIVQCEERLY
EFDRLVPEDEPLPESGYVQGCADAPSNETFCVFVYRDGNRVTFTEHVHQQ
NIPAATEPNVNLGVWHTVVHYNVTGLEEEFAERAAQAFVASNVQEVAIRR
QVFSGDGQGDCQFRVDIDATDMSLVLVCALGAVWVVSVALFGASLFFRRQ
NFFDMNDPLHWAQLTGADDDMLGANNPLVATSDLSGRRRIVISMSQKTED
MRFRLFSKLRKGNERNATNTG*
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