Ggra4587.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4587.t1
Unique NameGgra4587.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length131
Homology
BLAST of Ggra4587.t1 vs. uniprot
Match: A0A2V3IPX3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX3_9FLOR)

HSP 1 Score: 219 bits (559), Expect = 6.980e-72
Identity = 107/130 (82.31%), Postives = 118/130 (90.77%), Query Frame = 0
Query:    1 MLRTLATRAFTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKPVVITVVD 130
            MLRTLA RAFT  +R FASQIREPGPVGL+AG+DPRATL +LYK+TLDAVK IP+ A YRVNVEKITNYRMGIV ENEDI KIEN L++GQIQEVIEQAEDEL+LIPHM+EWKPWEMK+GEKPVVI VVD
Sbjct:    1 MLRTLARRAFTPSIRSFASQIREPGPVGLYAGDDPRATLRELYKRTLDAVKSIPETATYRVNVEKITNYRMGIVKENEDIAKIENALSVGQIQEVIEQAEDELELIPHMVEWKPWEMKEGEKPVVINVVD 130          
BLAST of Ggra4587.t1 vs. uniprot
Match: R7QQ99 (NADH:ubiquinone oxidoreductase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ99_CHOCR)

HSP 1 Score: 175 bits (443), Expect = 3.310e-54
Identity = 84/130 (64.62%), Postives = 106/130 (81.54%), Query Frame = 0
Query:    1 MLRTLATRAFTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKPVVITVVD 130
            MLR +A RAF++   R  + IREPG VGL   +DPR  L +LY +TL+AVK++P++A YR NVEKITNYR+G+VSENEDI KIE  LNIGQ+QE+IEQAE+EL+LIPHM +WKPWEM+DG+KP VI +VD
Sbjct:    1 MLRCVARRAFSAARVRNLATIREPGVVGLVTPDDPRQALKELYGRTLEAVKDLPESAAYRTNVEKITNYRLGVVSENEDIEKIEAMLNIGQVQEIIEQAENELELIPHMADWKPWEMQDGKKPAVIEIVD 130          
BLAST of Ggra4587.t1 vs. uniprot
Match: A0A5J4YS50 (Putative NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 5 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YS50_PORPP)

HSP 1 Score: 108 bits (270), Expect = 8.820e-27
Identity = 57/129 (44.19%), Postives = 80/129 (62.02%), Query Frame = 0
Query:    2 LRTLATRAFTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKPVVITVVD 130
            LR+L  RA  +P    +S  R   PVG       R TL +LY+QTL  +++IP +A YR+N EK  NYR+ +V E ED+ ++EN L  G I+ V+ QA++E+ LIP +IE KPWE     KPV I ++D
Sbjct:  102 LRSLVQRAARAPSWVSSSGTRFAPPVGYEPDPQIRQTLTELYRQTLKMLEDIPASAAYRINAEKTINYRLKLVQETEDVMELENKLGFGHIEGVVVQAQNEIDLIPTLIEQKPWEAPADIKPVKIELID 230          
BLAST of Ggra4587.t1 vs. uniprot
Match: A0A1Y1I1B4 (NADH-ubiquinone oxidoreductase 1 alpha subcomplex subunit 5 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1B4_KLENI)

HSP 1 Score: 101 bits (252), Expect = 4.160e-25
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = 0
Query:    8 RAFTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAVKE-IPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKPVVI 126
            R FT PL   A +    G VGL    + R  L+ LY QTL  VK+ IP+ A YR +VE+ITNYR+ +  E E+  +IE  +  GQ++E+IEQA DEL+LIP M+E KPWE+ +G K  +I
Sbjct:    4 RRFTGPLLSAAKE--STGIVGLDVVPNAREVLIGLYDQTLKVVKDQIPEQAEYRRSVERITNYRLKVCQEEEEHDRIEQRIGCGQVEELIEQANDELELIPVMVESKPWEVPEGYKVEII 121          
BLAST of Ggra4587.t1 vs. uniprot
Match: A0A2K1KJE1 (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KJE1_PHYPA)

HSP 1 Score: 103 bits (257), Expect = 1.180e-24
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 0
Query:    7 TRAFTSPLRRFASQI-----REPGPVGLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKPVVI 126
            TR F   LRR A  +        G VGL    + R  L+ LY+QTL AV+ IP++A YR +VE +T++R+ +  E +D   IE  +  GQ++E+I QA+DELQLIP M EWKPWE+ +G K  VI
Sbjct:  112 TRCFIMFLRRIAGPLLASVKESTGIVGLDVVPNAREVLITLYQQTLKAVQPIPESAQYRKSVEALTHHRLKVCQEEQDWENIEKRIQGGQVEELIVQAKDELQLIPKMAEWKPWEVPEGYKVEVI 236          
BLAST of Ggra4587.t1 vs. uniprot
Match: A0A4P9XNK1 (ETC complex I subunit conserved region-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XNK1_9FUNG)

HSP 1 Score: 99.4 bits (246), Expect = 2.690e-24
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 0
Query:   13 PLRRFASQIREPGPV-GLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKP 123
            P RR    +++   + G+     PR  L+ +Y+QTL+A+K IP  AVYR   E +T  R+G+V   E++ +IE TL++GQI+EVI QAEDEL+LI  MI+WK WE  +   P
Sbjct:    3 PTRRLFQAVKQTTSIYGVAVHPSPRPHLISVYQQTLEALKPIPATAVYRQATEALTKQRLGVVEGTENVEEIERTLDVGQIEEVIMQAEDELKLISKMIQWKAWEPLEEPAP 114          
BLAST of Ggra4587.t1 vs. uniprot
Match: A0A8H7SB35 (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SB35_9FUNG)

HSP 1 Score: 98.6 bits (244), Expect = 4.700e-24
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 0
Query:   10 FTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKP 123
            FT PL + A +    G  G+    +PR  LVQ Y ++L+A+  +P  AVYR   E +T +R+ +V  NED++KIE+ +N GQI+E+I QAEDEL+LI  M EWKPWE  +   P
Sbjct:    3 FTRPLLQAAKKATT-GLTGVPVHPNPRPHLVQTYNKSLEALSRLPTHAVYRQATESLTQHRLAVVENNEDVSKIESLINSGQIEELIIQAEDELKLIGKMEEWKPWEQLEVPIP 115          
BLAST of Ggra4587.t1 vs. uniprot
Match: A0A1X6P5Q4 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5Q4_PORUM)

HSP 1 Score: 99.0 bits (245), Expect = 5.020e-24
Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = 0
Query:   22 REPGPVGLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKPVVITVVD 130
            R  G  GL    +P  TL  LY +T  A+  IP +A YR+NVEK+T +R+G+V+   D+  +E  + +G ++EVI  A+ ELQLIP M EW PW++ DG++ V +T+V+
Sbjct:   31 RVSGHAGLTRDANPHETLRALYAETAAALDAIPASAAYRLNVEKVTAHRLGLVNATPDVGALEAKIGVGAVEEVIAAAKAELQLIPTMAEWAPWKLPDGKQKVEVTLVE 139          
BLAST of Ggra4587.t1 vs. uniprot
Match: A0A7M5V1V6 (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V1V6_9CNID)

HSP 1 Score: 95.9 bits (237), Expect = 3.850e-23
Identity = 43/97 (44.33%), Postives = 65/97 (67.01%), Query Frame = 0
Query:   27 VGLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEKP 123
            VGL   + PR TL ++Y +TL  +  +P+++VYR  VE ITN R+ +V + ED+ K+E  +N GQI+EV+ QA DELQL+  M +W+ WE  + + P
Sbjct:   12 VGLAVAKAPRKTLTEIYSKTLGVLSTLPESSVYRQQVEHITNQRLELVKKTEDVMKLEKLINCGQIEEVMVQASDELQLVEQMAQWQVWEAPESQAP 108          
BLAST of Ggra4587.t1 vs. uniprot
Match: D8RH13 (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RH13_SELML)

HSP 1 Score: 97.1 bits (240), Expect = 7.670e-23
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 0
Query:    6 ATRAFTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAVKEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAEDELQLIPHMIEWKPWEMKDGEK 122
            A R    PL   A   +  G  GL      R  L+ LY++TL A + IP+ A Y+  V KITN R+ +  E ED  KIE  +  GQ++E+I+QAEDEL+LIP MIEWKPWE+ +G K
Sbjct:    3 ARRFHPGPL--LAKVKKSTGITGLRVEPQAREKLLGLYQRTLLAAESIPEEAFYKQAVLKITNARLKVCQEEEDWEKIEERIGCGQVEELIKQAEDELKLIPKMIEWKPWEVPEGHK 117          
The following BLAST results are available for this feature:
BLAST of Ggra4587.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPX36.980e-7282.31NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
R7QQ993.310e-5464.62NADH:ubiquinone oxidoreductase n=1 Tax=Chondrus cr... [more]
A0A5J4YS508.820e-2744.19Putative NADH dehydrogenase ubiquinone 1 alpha sub... [more]
A0A1Y1I1B44.160e-2547.50NADH-ubiquinone oxidoreductase 1 alpha subcomplex ... [more]
A0A2K1KJE11.180e-2445.60Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A4P9XNK12.690e-2444.64ETC complex I subunit conserved region-domain-cont... [more]
A0A8H7SB354.700e-2445.61Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A1X6P5Q45.020e-2443.12Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7M5V1V63.850e-2344.33Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
D8RH137.670e-2346.15Uncharacterized protein n=3 Tax=Selaginella moelle... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006806NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5PFAMPF04716ETC_C1_NDUFA5coord: 28..94
e-value: 2.5E-23
score: 81.6
IPR006806NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5PANTHERPTHR12653NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNITcoord: 18..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:49003..49519 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4587.t1Ggra4587.t1Gracilaria gracilis GNS1m malemRNAtig00000941_pilon 49003..49519 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4587.t1 ID=Ggra4587.t1|Name=Ggra4587.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=131bp
MLRTLATRAFTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAV
KEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAE
DELQLIPHMIEWKPWEMKDGEKPVVITVVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006806NDUFA5