Ggra4587.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4587.t1
Unique NameGgra4587.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000941_piloncontigtig00000941_pilon:49003..49519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S236_34V6.1
PFAMsETC_C1_NDUFA5
Max annot lvl35493|Streptophyta
KEGG koko:K03949
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009853,GO:0009987,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue7.6e-25
EggNOG OGsKOG3365@1|root,KOG3365@2759|Eukaryota,37TSM@33090|Viridiplantae,3GCS6@35493|Streptophyta
DescriptionNADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 5
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4587Ggra4587Gracilaria gracilis GNS1m malegenetig00000941_pilon 49003..49519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4587.t1Ggra4587.t1Gracilaria gracilis GNS1m malepolypeptidetig00000941_pilon 49003..49519 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4587.t1.stop1Ggra4587.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000941_pilon 49003..49005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4587.t1.CDS1Ggra4587.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000941_pilon 49003..49284 -
Ggra4587.t1.CDS2Ggra4587.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000941_pilon 49409..49519 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4587.t1.exon1Ggra4587.t1.exon1Gracilaria gracilis GNS1m maleexontig00000941_pilon 49003..49284 -
Ggra4587.t1.exon2Ggra4587.t1.exon2Gracilaria gracilis GNS1m maleexontig00000941_pilon 49409..49519 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4587.t1.intron1Ggra4587.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000941_pilon 49285..49408 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4587.t1.start1Ggra4587.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000941_pilon 49517..49519 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4587.t1 ID=Ggra4587.t1|Name=Ggra4587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=131bp
MLRTLATRAFTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAV
KEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAE
DELQLIPHMIEWKPWEMKDGEKPVVITVVD*
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spliced messenger RNA

>Ggra4587.t1 ID=Ggra4587.t1|Name=Ggra4587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp|location=Sequence derived from alignment at tig00000941_pilon:49003..49519- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGAACTTTGGCGACACGAGCATTCACTTCTCCACTGCGGAGATT
TGCATCACAAATTCGAGAACCCGGACCCGTTGGTCTTTTCGCCGGAGAGG
ATCCACGAGCGACCCTTGTCCAGTTATACAAACAAACTCTAGATGCGGTG
AAAGAAATCCCGAAGGCCGCTGTGTATAGAGTCAATGTGGAGAAGATAAC
CAATTATCGAATGGGAATTGTCAGTGAGAATGAAGATATCACCAAGATTG
AGAATACTCTGAATATCGGTCAGATCCAAGAGGTTATTGAGCAAGCCGAA
GATGAACTTCAACTAATTCCCCACATGATAGAATGGAAGCCATGGGAAAT
GAAAGATGGAGAAAAACCTGTCGTCATAACTGTTGTGGACTGA
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protein sequence of Ggra4587.t1

>Ggra4587.t1 ID=Ggra4587.t1|Name=Ggra4587.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=131bp
MLRTLATRAFTSPLRRFASQIREPGPVGLFAGEDPRATLVQLYKQTLDAV
KEIPKAAVYRVNVEKITNYRMGIVSENEDITKIENTLNIGQIQEVIEQAE
DELQLIPHMIEWKPWEMKDGEKPVVITVVD*
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mRNA from alignment at tig00000941_pilon:49003..49519-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4587.t1 ID=Ggra4587.t1|Name=Ggra4587.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp|location=Sequence derived from alignment at tig00000941_pilon:49003..49519- (Gracilaria gracilis GNS1m male)
ATGCTTCGAACTTTGGCGACACGAGCATTCACTTCTCCACTGCGGAGATT
TGCATCACAAATTCGAGAACCCGGACCCGTTGGTCTTTTCGCCGGAGAGG
ATCCACGAGCGGTAAGCTCCCAGTTTCAATTGGCGTTGCAACGCAATGAC
TTTTTCCATTTCCAGTAATCCTAACAGTATGATCTGAATCACAAATCAAC
CCATGTGTGTCTCAACGCGCGGGTCTAACCGTTAGACCCTTGTCCAGTTA
TACAAACAAACTCTAGATGCGGTGAAAGAAATCCCGAAGGCCGCTGTGTA
TAGAGTCAATGTGGAGAAGATAACCAATTATCGAATGGGAATTGTCAGTG
AGAATGAAGATATCACCAAGATTGAGAATACTCTGAATATCGGTCAGATC
CAAGAGGTTATTGAGCAAGCCGAAGATGAACTTCAACTAATTCCCCACAT
GATAGAATGGAAGCCATGGGAAATGAAAGATGGAGAAAAACCTGTCGTCA
TAACTGTTGTGGACTGA
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Coding sequence (CDS) from alignment at tig00000941_pilon:49003..49519-

>Ggra4587.t1 ID=Ggra4587.t1|Name=Ggra4587.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=393bp|location=Sequence derived from alignment at tig00000941_pilon:49003..49519- (Gracilaria gracilis GNS1m male)
ATGCTTCGAACTTTGGCGACACGAGCATTCACTTCTCCACTGCGGAGATT
TGCATCACAAATTCGAGAACCCGGACCCGTTGGTCTTTTCGCCGGAGAGG
ATCCACGAGCGACCCTTGTCCAGTTATACAAACAAACTCTAGATGCGGTG
AAAGAAATCCCGAAGGCCGCTGTGTATAGAGTCAATGTGGAGAAGATAAC
CAATTATCGAATGGGAATTGTCAGTGAGAATGAAGATATCACCAAGATTG
AGAATACTCTGAATATCGGTCAGATCCAAGAGGTTATTGAGCAAGCCGAA
GATGAACTTCAACTAATTCCCCACATGATAGAATGGAAGCCATGGGAAAT
GAAAGATGGAGAAAAACCTGTCGTCATAACTGTTGTGGACTGA
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