Ggra4468.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4468.t1
Unique NameGgra4468.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length667
Homology
BLAST of Ggra4468.t1 vs. uniprot
Match: R7QHG7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHG7_CHOCR)

HSP 1 Score: 406 bits (1044), Expect = 5.990e-129
Identity = 276/709 (38.93%), Postives = 375/709 (52.89%), Query Frame = 0
Query:   17 TMWEKQQGRAMIGRHIQITWPSDNAVYTALVVDFYPNENQHKVLYSSDESIEVLELGDGPNQRSWARARELEGDPLVGKRIVLFDHGEAPGDEWFDFMRDESQMPEEKFQVIVLQRIKNVVKDDVV--GPMASGKHA---FYRVLNVINDYLALIDLAATDYELSAAAEQQPXXXXXXXXXXVVSSPSPGPQ--LPEA----------EDEPQAYSKDEEEYNPDKEMDIGEESDEE----------VMPSSS----RRRQLAEDPHPA----PP------RRDTRV-APDXXXXXXXXXXXIYKVAKVVSADRVVEADQPFEPALDIDVDQDDLM-ASPLK--GGAEYG----GSQETRDEPIE-RSVSK--GKRKPPXXXXXXXELDDDENG--QDTASDNEDDGLKSKSR-----KIQCQVGDFIVLDTGIGGAPRKAYVEAHLPETDTHFVAFCDRRGGNLQIKLTPENHKVLNENEGKQLARKKQDTFDDDVDVAMLSDEAPEPKPKRVQKRKAKTPARQKKRGGRRIGSPEVKGQSANQDICGRCISIVWPKENLVYVALVLGYSSFSLQHQIVYMVDHCIETLNLKYREWTLLPREKEPWMDNGLVGKRLYVFWPGEYDDEESQVLARQAFGDDTKVPYEAYVLSYVGEGKYKIIYPATEDTEIRVLRATDDE--DASALEKEWDLLDEGVSEIEGLPIIGW 664
            T W +  G A++G+ I + WPSD   Y ALVV F+P   +HK++Y  DES+E ++LG GP QR + R  +   DPLVGK I      + P   WFDFMRD  +    KF VIV   I    + + V   P   G      FYRV+ + N+YLA +DLA  DY +    E  P          + S   PG +  LP+           +DE      D+ E    ++ D+ +++DE+          + PS S    R  + AE+   A    PP      R D +  A             +    K VS D     D+P EP   ++V  D    A PL+  GG   G    G+Q+TRD+P+E RS  K  GK   P        L +DE G   DTASD+E  G  S+ +     + + QVGD+I LD G G  PRKA+VEA+LP  D HFVAFCD +GGNL++KLT  NH VL ++E   L+R           +A     A   + KR +     + +R KK+   R  SP ++G SA  +ICGRC+ IVWP+  LVY ALVLG++    +H +VY+ DHC+E + LKYREW LL RE EPW+  G++G RLYV W GEYD  E+   +++ F  + KV YEAYVLSY GEGKY ++YP TEDTE+R L+  + E  D   LE+EW  L  G +E+ GLP++GW
Sbjct:   30 TFWSEPDGLALVGKAISVLWPSDGNYYPALVVGFHPRARKHKLIYLEDESVESVDLGIGPAQRDF-RLADSPKDPLVGKTIEFLPDAKPPAASWFDFMRDPREKSAHKFSVIVFASIDYEPQPNEVCSPPRPKGDSTPSQFYRVIYLANEYLATVDLAHVDYNI----ETPPQQPEDPVMEEMESRSGPGSKSALPQQLRRSGTRSIQDDEQDGAGGDDYEPTKAEQDDVSDDADEQDEKEPVVKKDLPPSLSETIGRVTKAAEEAGAADVVVPPAVVGQKRADRKYRASGTKDLVVDAMRDVVMDKKNVSVDIDTGFDKP-EPGTSVEVSPDGSPNAVPLEKTGGRAKGEGSIGTQDTRDDPLEPRSAGKKSGKSSRPVPASLYPPLFEDEEGGDNDTASDDEKLGWASEEKVEGAGESKSQVGDYISLDLGDGNEPRKAFVEAYLPGLDKHFVAFCDNKGGNLKVKLTRSNHTVLADDEVHVLSR---------TPIAKEDPGAAAGRSKRRRNVLTLSDSRPKKKLEAR--SPPIRGDSAGPEICGRCLKIVWPESELVYTALVLGFNPEKNEHLVVYLSDHCVEVVQLKYREWNLLSREDEPWIAQGMLGNRLYVLWNGEYDSAEANEKSKEIFDGECKVVYEAYVLSYEGEGKYLLLYPNTEDTEVRTLQMDEKERGDQKPLEREWGPLGAGATEVAGLPVVGW 721          
BLAST of Ggra4468.t1 vs. uniprot
Match: A0A2V3INV6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INV6_9FLOR)

HSP 1 Score: 386 bits (992), Expect = 1.980e-123
Identity = 197/285 (69.12%), Postives = 231/285 (81.05%), Query Frame = 0
Query:  352 LDDDENGQDTASDNEDDG-LKSKSRKIQCQVGDFIVLDTGIGGAPRKAYVEAHLPETDTHFVAFCDRRGGNLQIKLTPENHKVLNENEGKQLARKKQ-DTFDDDVD-----VAMLSDEAPEPKPKRVQKRKAK-TPARQKKRGGRRIGSPEVKGQSANQDICGRCISIVWPKENLVYVALVLGYSSFSLQHQIVYMVDHCIETLNLKYREWTLLPREKEPWMDNGLVGKRLYVFWPGEYDDEESQVLARQAFGDDTKVPYEAYVLSYVGEGKYKIIYPATEDTEI 628
            L DDE  +  ASD ++   +KSKSR + C VGDFI LDTGIGGAPR AY+EA+LPE  THFV+FCDRRGGNLQIK+TP+NH V +E EGK+LA++KQ +  D+D D       +LSDEAP PK +R  KR+ K T +R  KR  R   +PE+KG+SANQDICGRCISIVWP ENLVYVAL+LGYSS+S QHQ+VYM+DHCIETL+LKYREWT LPREKE WMDN LVGKRLYVFWPGEYDDE SQVLA++AFGD+TKVPYEAYVLSY+ E ++K IYPATED EI
Sbjct:  238 LFDDEEDEHEASDGDNHWKIKSKSRSVSCDVGDFISLDTGIGGAPRTAYIEAYLPEAGTHFVSFCDRRGGNLQIKVTPDNHHVPSEAEGKKLAKQKQREVHDEDYDKDNAAAEILSDEAPPPKTRRTPKRQGKLTSSRPAKRSNRYKRTPEIKGKSANQDICGRCISIVWPGENLVYVALILGYSSYSKQHQVVYMLDHCIETLSLKYREWTPLPREKELWMDNSLVGKRLYVFWPGEYDDEGSQVLAQKAFGDETKVPYEAYVLSYLVEQEHKTIYPATEDMEI 522          
The following BLAST results are available for this feature:
BLAST of Ggra4468.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QHG75.990e-12938.93Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3INV61.980e-12369.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..352
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..486
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 453..495
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..374
NoneNo IPR availablePANTHERPTHR12663:SF3TRANSCRIPTIONAL REGULATORcoord: 174..559
NoneNo IPR availablePANTHERPTHR12663:SF3TRANSCRIPTIONAL REGULATORcoord: 12..72
IPR039776Sister chromatid cohesion protein Pds5PANTHERPTHR12663ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATEDcoord: 174..559
IPR039776Sister chromatid cohesion protein Pds5PANTHERPTHR12663ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATEDcoord: 12..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000898_piloncontigtig00000898_pilon:578561..580561 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4468.t1Ggra4468.t1Gracilaria gracilis GNS1m malemRNAtig00000898_pilon 578561..580561 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4468.t1 ID=Ggra4468.t1|Name=Ggra4468.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=667bp
MGVPRSKSSRRDKNKRTMWEKQQGRAMIGRHIQITWPSDNAVYTALVVDF
YPNENQHKVLYSSDESIEVLELGDGPNQRSWARARELEGDPLVGKRIVLF
DHGEAPGDEWFDFMRDESQMPEEKFQVIVLQRIKNVVKDDVVGPMASGKH
AFYRVLNVINDYLALIDLAATDYELSAAAEQQPEQQQEQQPEPVVSSPSP
GPQLPEAEDEPQAYSKDEEEYNPDKEMDIGEESDEEVMPSSSRRRQLAED
PHPAPPRRDTRVAPDPDPEEDDLDIDIYKVAKVVSADRVVEADQPFEPAL
DIDVDQDDLMASPLKGGAEYGGSQETRDEPIERSVSKGKRKPPPKPSPFP
ELDDDENGQDTASDNEDDGLKSKSRKIQCQVGDFIVLDTGIGGAPRKAYV
EAHLPETDTHFVAFCDRRGGNLQIKLTPENHKVLNENEGKQLARKKQDTF
DDDVDVAMLSDEAPEPKPKRVQKRKAKTPARQKKRGGRRIGSPEVKGQSA
NQDICGRCISIVWPKENLVYVALVLGYSSFSLQHQIVYMVDHCIETLNLK
YREWTLLPREKEPWMDNGLVGKRLYVFWPGEYDDEESQVLARQAFGDDTK
VPYEAYVLSYVGEGKYKIIYPATEDTEIRVLRATDDEDASALEKEWDLLD
EGVSEIEGLPIIGWTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039776Pds5