Ggra4468.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4468.t1
Unique Name	Ggra4468.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	667

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000898_pilon	contig	tig00000898_pilon:578561..580561 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4468	Ggra4468	Gracilaria gracilis GNS1m male	gene	tig00000898_pilon 578561..580561 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4468.t1.start1	Ggra4468.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000898_pilon 578561..578563 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4468.t1.CDS1	Ggra4468.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000898_pilon 578561..580561 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4468.t1.exon1	Ggra4468.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000898_pilon 578561..580561 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4468.t1.stop1	Ggra4468.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000898_pilon 580559..580561 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4468.t1	Ggra4468.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000898_pilon 578561..580561 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000898_pilon:578561..580561+
coding sequence from alignment at tig00000898_pilon:578561..580561+

mRNA sequence

>Ggra4468.t1 ID=Ggra4468.t1|Name=Ggra4468.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=667bp
MGVPRSKSSRRDKNKRTMWEKQQGRAMIGRHIQITWPSDNAVYTALVVDF
YPNENQHKVLYSSDESIEVLELGDGPNQRSWARARELEGDPLVGKRIVLF
DHGEAPGDEWFDFMRDESQMPEEKFQVIVLQRIKNVVKDDVVGPMASGKH
AFYRVLNVINDYLALIDLAATDYELSAAAEQQPEQQQEQQPEPVVSSPSP
GPQLPEAEDEPQAYSKDEEEYNPDKEMDIGEESDEEVMPSSSRRRQLAED
PHPAPPRRDTRVAPDPDPEEDDLDIDIYKVAKVVSADRVVEADQPFEPAL
DIDVDQDDLMASPLKGGAEYGGSQETRDEPIERSVSKGKRKPPPKPSPFP
ELDDDENGQDTASDNEDDGLKSKSRKIQCQVGDFIVLDTGIGGAPRKAYV
EAHLPETDTHFVAFCDRRGGNLQIKLTPENHKVLNENEGKQLARKKQDTF
DDDVDVAMLSDEAPEPKPKRVQKRKAKTPARQKKRGGRRIGSPEVKGQSA
NQDICGRCISIVWPKENLVYVALVLGYSSFSLQHQIVYMVDHCIETLNLK
YREWTLLPREKEPWMDNGLVGKRLYVFWPGEYDDEESQVLARQAFGDDTK
VPYEAYVLSYVGEGKYKIIYPATEDTEIRVLRATDDEDASALEKEWDLLD
EGVSEIEGLPIIGWTD*

spliced messenger RNA

>Ggra4468.t1 ID=Ggra4468.t1|Name=Ggra4468.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00000898_pilon:578561..580561+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTCCCGCGCAGTAAATCGTCGCGCCGCGACAAGAATAAGCGCAC
GATGTGGGAAAAGCAGCAGGGGCGTGCCATGATAGGCCGCCATATACAAA
TCACCTGGCCCTCCGACAATGCCGTCTACACTGCGCTTGTCGTCGACTTT
TACCCCAACGAAAATCAACACAAAGTGCTGTACAGTTCCGATGAGTCGAT
CGAGGTTCTAGAGCTGGGCGACGGACCAAACCAGCGTTCGTGGGCACGCG
CGCGTGAGCTAGAAGGTGATCCTCTAGTGGGAAAGCGAATTGTTCTGTTT
GATCATGGCGAAGCGCCCGGTGATGAATGGTTTGACTTTATGCGCGATGA
ATCTCAGATGCCGGAAGAAAAGTTCCAAGTCATTGTGCTGCAGAGAATCA
AAAACGTTGTCAAGGATGATGTCGTTGGTCCTATGGCCAGCGGTAAGCAT
GCGTTTTATCGTGTGCTAAACGTCATAAACGACTACCTTGCGCTTATCGA
CCTTGCCGCCACAGACTACGAGCTTTCCGCCGCCGCCGAACAACAGCCAG
AACAGCAACAGGAGCAGCAACCTGAGCCTGTGGTTTCTTCTCCTTCCCCT
GGTCCGCAGCTACCCGAAGCCGAAGATGAGCCCCAAGCATACTCCAAGGA
CGAGGAGGAGTACAATCCCGATAAAGAAATGGATATAGGTGAAGAAAGTG
ATGAAGAAGTGATGCCATCTTCTAGTCGCCGCCGTCAGCTTGCTGAAGAT
CCTCATCCCGCTCCACCACGAAGGGACACTCGTGTTGCCCCGGATCCGGA
TCCTGAGGAGGACGATTTAGACATTGACATTTACAAAGTTGCAAAAGTTG
TCTCCGCGGATCGCGTTGTGGAGGCTGACCAACCCTTCGAACCTGCTCTT
GATATCGACGTTGACCAAGACGATCTCATGGCTTCCCCGCTCAAAGGTGG
GGCCGAGTACGGTGGGTCGCAAGAAACCCGCGACGAACCTATCGAACGCT
CTGTTTcaaagggaaagcgaaagccaccgccaaaaccaTCCCCGTTCCCG
GAGTTGGATGACGACGAAAACGGTCAGGATACCGCCTCTGACAACGAAGA
CGATGGCTTGAAGTCAAAAAGCAGGAAGATTCAATGCCAAGTTGGGGACT
TCATTGTACTAGATACTGGTATCGGCGGCGCTCCTCGCAAAGCATATGTC
GAAGCCCATCTGCCGGAGACTGATACTCATTTCGTTGCCTTTTGTGACAG
AAGAGGCGGCAATTTACAAATCAAGTTAACTCCGGAGAACCACAAAGTGC
TAAACGAAAATGAAGGCAAGCAACTGGCAAGGAAGAAGCAAGACACGTTC
GACGACGACGTTGACGTTGCAATGCTCTCCGATGAAGCACCTGAACCGAA
ACCGAAACGTGTGCAAAAACGAAAGGCAAAGACCCCAGCGAGACAAAAGA
AGCGAGGGGGTCGAAGGATAGGATCCCCAGAAGTCAAAGGGCAATCTGCG
AATCAAGATATTTGCGGCAGGTGTATTTCCATTGTCTGGCCGAAGGAGAA
CCTGGTGTATGTTGCATTGGTTCTAGGATACAGTTCGTTTTCTTTGCAAC
ATCAAATTGTTTATATGGTCGATCACTGTATTGAAACTCTCAATCTGAAA
TACAGGGAATGGACGCTCCTACCTCGTGAAAAGGAGCCATGGATGGACAA
TGGTCTGGTTGGTAAGAGACTATACGTGTTCTGGCCTGGTGAGTACGATG
ATGAAGAAAGTCAAGTGCTAGCCAGACAAGCTTTCGGTGACGACACAAAG
GTTCCTTACGAGGCGTACGTATTGAGTTATGTCGGAGAAGGAAAGTACAA
AATTATCTACCCTGCTACAGAAGACACGGAGATTCGGGTGCTTCGAGCTA
CCGACGATGAAGACGCATCTGCACTGGAGAAAGAATGGGACTTGTTGGAC
GAAGGTGTAAGTGAAATTGAAGGCTTGCCTATCATTGGATGGACAGACTG
A

protein sequence of Ggra4468.t1

>Ggra4468.t1 ID=Ggra4468.t1|Name=Ggra4468.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=667bp
MGVPRSKSSRRDKNKRTMWEKQQGRAMIGRHIQITWPSDNAVYTALVVDF
YPNENQHKVLYSSDESIEVLELGDGPNQRSWARARELEGDPLVGKRIVLF
DHGEAPGDEWFDFMRDESQMPEEKFQVIVLQRIKNVVKDDVVGPMASGKH
AFYRVLNVINDYLALIDLAATDYELSAAAEQQPEQQQEQQPEPVVSSPSP
GPQLPEAEDEPQAYSKDEEEYNPDKEMDIGEESDEEVMPSSSRRRQLAED
PHPAPPRRDTRVAPDPDPEEDDLDIDIYKVAKVVSADRVVEADQPFEPAL
DIDVDQDDLMASPLKGGAEYGGSQETRDEPIERSVSKGKRKPPPKPSPFP
ELDDDENGQDTASDNEDDGLKSKSRKIQCQVGDFIVLDTGIGGAPRKAYV
EAHLPETDTHFVAFCDRRGGNLQIKLTPENHKVLNENEGKQLARKKQDTF
DDDVDVAMLSDEAPEPKPKRVQKRKAKTPARQKKRGGRRIGSPEVKGQSA
NQDICGRCISIVWPKENLVYVALVLGYSSFSLQHQIVYMVDHCIETLNLK
YREWTLLPREKEPWMDNGLVGKRLYVFWPGEYDDEESQVLARQAFGDDTK
VPYEAYVLSYVGEGKYKIIYPATEDTEIRVLRATDDEDASALEKEWDLLD
EGVSEIEGLPIIGWTD*

mRNA from alignment at tig00000898_pilon:578561..580561+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4468.t1 ID=Ggra4468.t1|Name=Ggra4468.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00000898_pilon:578561..580561+ (Gracilaria gracilis GNS1m male)
ATGGGCGTCCCGCGCAGTAAATCGTCGCGCCGCGACAAGAATAAGCGCAC
GATGTGGGAAAAGCAGCAGGGGCGTGCCATGATAGGCCGCCATATACAAA
TCACCTGGCCCTCCGACAATGCCGTCTACACTGCGCTTGTCGTCGACTTT
TACCCCAACGAAAATCAACACAAAGTGCTGTACAGTTCCGATGAGTCGAT
CGAGGTTCTAGAGCTGGGCGACGGACCAAACCAGCGTTCGTGGGCACGCG
CGCGTGAGCTAGAAGGTGATCCTCTAGTGGGAAAGCGAATTGTTCTGTTT
GATCATGGCGAAGCGCCCGGTGATGAATGGTTTGACTTTATGCGCGATGA
ATCTCAGATGCCGGAAGAAAAGTTCCAAGTCATTGTGCTGCAGAGAATCA
AAAACGTTGTCAAGGATGATGTCGTTGGTCCTATGGCCAGCGGTAAGCAT
GCGTTTTATCGTGTGCTAAACGTCATAAACGACTACCTTGCGCTTATCGA
CCTTGCCGCCACAGACTACGAGCTTTCCGCCGCCGCCGAACAACAGCCAG
AACAGCAACAGGAGCAGCAACCTGAGCCTGTGGTTTCTTCTCCTTCCCCT
GGTCCGCAGCTACCCGAAGCCGAAGATGAGCCCCAAGCATACTCCAAGGA
CGAGGAGGAGTACAATCCCGATAAAGAAATGGATATAGGTGAAGAAAGTG
ATGAAGAAGTGATGCCATCTTCTAGTCGCCGCCGTCAGCTTGCTGAAGAT
CCTCATCCCGCTCCACCACGAAGGGACACTCGTGTTGCCCCGGATCCGGA
TCCTGAGGAGGACGATTTAGACATTGACATTTACAAAGTTGCAAAAGTTG
TCTCCGCGGATCGCGTTGTGGAGGCTGACCAACCCTTCGAACCTGCTCTT
GATATCGACGTTGACCAAGACGATCTCATGGCTTCCCCGCTCAAAGGTGG
GGCCGAGTACGGTGGGTCGCAAGAAACCCGCGACGAACCTATCGAACGCT
CTGTTTcaaagggaaagcgaaagccaccgccaaaaccaTCCCCGTTCCCG
GAGTTGGATGACGACGAAAACGGTCAGGATACCGCCTCTGACAACGAAGA
CGATGGCTTGAAGTCAAAAAGCAGGAAGATTCAATGCCAAGTTGGGGACT
TCATTGTACTAGATACTGGTATCGGCGGCGCTCCTCGCAAAGCATATGTC
GAAGCCCATCTGCCGGAGACTGATACTCATTTCGTTGCCTTTTGTGACAG
AAGAGGCGGCAATTTACAAATCAAGTTAACTCCGGAGAACCACAAAGTGC
TAAACGAAAATGAAGGCAAGCAACTGGCAAGGAAGAAGCAAGACACGTTC
GACGACGACGTTGACGTTGCAATGCTCTCCGATGAAGCACCTGAACCGAA
ACCGAAACGTGTGCAAAAACGAAAGGCAAAGACCCCAGCGAGACAAAAGA
AGCGAGGGGGTCGAAGGATAGGATCCCCAGAAGTCAAAGGGCAATCTGCG
AATCAAGATATTTGCGGCAGGTGTATTTCCATTGTCTGGCCGAAGGAGAA
CCTGGTGTATGTTGCATTGGTTCTAGGATACAGTTCGTTTTCTTTGCAAC
ATCAAATTGTTTATATGGTCGATCACTGTATTGAAACTCTCAATCTGAAA
TACAGGGAATGGACGCTCCTACCTCGTGAAAAGGAGCCATGGATGGACAA
TGGTCTGGTTGGTAAGAGACTATACGTGTTCTGGCCTGGTGAGTACGATG
ATGAAGAAAGTCAAGTGCTAGCCAGACAAGCTTTCGGTGACGACACAAAG
GTTCCTTACGAGGCGTACGTATTGAGTTATGTCGGAGAAGGAAAGTACAA
AATTATCTACCCTGCTACAGAAGACACGGAGATTCGGGTGCTTCGAGCTA
CCGACGATGAAGACGCATCTGCACTGGAGAAAGAATGGGACTTGTTGGAC
GAAGGTGTAAGTGAAATTGAAGGCTTGCCTATCATTGGATGGACAGACTG
A

Coding sequence (CDS) from alignment at tig00000898_pilon:578561..580561+

>Ggra4468.t1 ID=Ggra4468.t1|Name=Ggra4468.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2001bp|location=Sequence derived from alignment at tig00000898_pilon:578561..580561+ (Gracilaria gracilis GNS1m male)
ATGGGCGTCCCGCGCAGTAAATCGTCGCGCCGCGACAAGAATAAGCGCAC
GATGTGGGAAAAGCAGCAGGGGCGTGCCATGATAGGCCGCCATATACAAA
TCACCTGGCCCTCCGACAATGCCGTCTACACTGCGCTTGTCGTCGACTTT
TACCCCAACGAAAATCAACACAAAGTGCTGTACAGTTCCGATGAGTCGAT
CGAGGTTCTAGAGCTGGGCGACGGACCAAACCAGCGTTCGTGGGCACGCG
CGCGTGAGCTAGAAGGTGATCCTCTAGTGGGAAAGCGAATTGTTCTGTTT
GATCATGGCGAAGCGCCCGGTGATGAATGGTTTGACTTTATGCGCGATGA
ATCTCAGATGCCGGAAGAAAAGTTCCAAGTCATTGTGCTGCAGAGAATCA
AAAACGTTGTCAAGGATGATGTCGTTGGTCCTATGGCCAGCGGTAAGCAT
GCGTTTTATCGTGTGCTAAACGTCATAAACGACTACCTTGCGCTTATCGA
CCTTGCCGCCACAGACTACGAGCTTTCCGCCGCCGCCGAACAACAGCCAG
AACAGCAACAGGAGCAGCAACCTGAGCCTGTGGTTTCTTCTCCTTCCCCT
GGTCCGCAGCTACCCGAAGCCGAAGATGAGCCCCAAGCATACTCCAAGGA
CGAGGAGGAGTACAATCCCGATAAAGAAATGGATATAGGTGAAGAAAGTG
ATGAAGAAGTGATGCCATCTTCTAGTCGCCGCCGTCAGCTTGCTGAAGAT
CCTCATCCCGCTCCACCACGAAGGGACACTCGTGTTGCCCCGGATCCGGA
TCCTGAGGAGGACGATTTAGACATTGACATTTACAAAGTTGCAAAAGTTG
TCTCCGCGGATCGCGTTGTGGAGGCTGACCAACCCTTCGAACCTGCTCTT
GATATCGACGTTGACCAAGACGATCTCATGGCTTCCCCGCTCAAAGGTGG
GGCCGAGTACGGTGGGTCGCAAGAAACCCGCGACGAACCTATCGAACGCT
CTGTTTcaaagggaaagcgaaagccaccgccaaaaccaTCCCCGTTCCCG
GAGTTGGATGACGACGAAAACGGTCAGGATACCGCCTCTGACAACGAAGA
CGATGGCTTGAAGTCAAAAAGCAGGAAGATTCAATGCCAAGTTGGGGACT
TCATTGTACTAGATACTGGTATCGGCGGCGCTCCTCGCAAAGCATATGTC
GAAGCCCATCTGCCGGAGACTGATACTCATTTCGTTGCCTTTTGTGACAG
AAGAGGCGGCAATTTACAAATCAAGTTAACTCCGGAGAACCACAAAGTGC
TAAACGAAAATGAAGGCAAGCAACTGGCAAGGAAGAAGCAAGACACGTTC
GACGACGACGTTGACGTTGCAATGCTCTCCGATGAAGCACCTGAACCGAA
ACCGAAACGTGTGCAAAAACGAAAGGCAAAGACCCCAGCGAGACAAAAGA
AGCGAGGGGGTCGAAGGATAGGATCCCCAGAAGTCAAAGGGCAATCTGCG
AATCAAGATATTTGCGGCAGGTGTATTTCCATTGTCTGGCCGAAGGAGAA
CCTGGTGTATGTTGCATTGGTTCTAGGATACAGTTCGTTTTCTTTGCAAC
ATCAAATTGTTTATATGGTCGATCACTGTATTGAAACTCTCAATCTGAAA
TACAGGGAATGGACGCTCCTACCTCGTGAAAAGGAGCCATGGATGGACAA
TGGTCTGGTTGGTAAGAGACTATACGTGTTCTGGCCTGGTGAGTACGATG
ATGAAGAAAGTCAAGTGCTAGCCAGACAAGCTTTCGGTGACGACACAAAG
GTTCCTTACGAGGCGTACGTATTGAGTTATGTCGGAGAAGGAAAGTACAA
AATTATCTACCCTGCTACAGAAGACACGGAGATTCGGGTGCTTCGAGCTA
CCGACGATGAAGACGCATCTGCACTGGAGAAAGAATGGGACTTGTTGGAC
GAAGGTGTAAGTGAAATTGAAGGCTTGCCTATCATTGGATGGACAGACTG
A