Ggra4092.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4092.t1
Unique NameGgra4092.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length330
Homology
BLAST of Ggra4092.t1 vs. uniprot
Match: A0A2V3J0T0 (Presenilins-associated rhomboid-like protein, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0T0_9FLOR)

HSP 1 Score: 326 bits (835), Expect = 1.330e-107
Identity = 169/329 (51.37%), Postives = 227/329 (69.00%), Query Frame = 0
Query:    6 IHRSAAQAFRRTVRGKRYCNRKTGLQLRANAATIGLFCFSAPQVLDVGSNRIADQGEFRAQDSVYSRFSGV----SSPEDVVEIIKDTYYDIHSKVDKLIKEKLSTGGGRDVFYITAVNVAIYTLWKIAPASLMHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSLASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLLGSAAKIDFAAHVGGALFANVWFQLVRDTLMHERKQRE-QSGGWRLSRFLSRTLRGLNRKESP 329
            + R A QA+ R +    + +++    +  NA T      +   V D+    +  + E  +Q S   R+  +    +S EDV E +K+ Y    +K D+ +K+K+ + GG+    +TAVN A+Y LWKIAP++LM RHFT+S+E M +ARVWTCVTSNFSH+GIFH  +NM +LN YG+DVA+VLG HRF L+YGTAGVAS+LASL+FRR+TR++Y SLGASGAVAATLWLYA  FP RRMS+ GS++ +SMQEFA+AFTV+DVAGLLGSA KIDFAAH+GGALFANVWFQLVR+ L+ E+     +   W +   +S       +K +P
Sbjct:    5 LQRIARQAYTRALHYSAFPHQQRNQCISRNAITYASVGLTILTVSDMPG--VLCREEKNSQPSYIPRYQELPHRFNSLEDVTERVKEGYATARNKTDRFVKKKMESEGGKTTLILTAVNAAVYALWKIAPSNLMLRHFTSSLESMAKARVWTCVTSNFSHQGIFHFGSNMLLLNNYGQDVADVLGMHRFCLYYGTAGVASTLASLAFRRITRSNYLSLGASGAVAATLWLYACFFPNRRMSILGSEHTVSMQEFAIAFTVIDVAGLLGSAGKIDFAAHLGGALFANVWFQLVREKLLQEQXXXXXEERRWNIMSIVSGNTPSSTQKRNP 331          
BLAST of Ggra4092.t1 vs. uniprot
Match: R7QBZ8 (Rhomboid domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBZ8_CHOCR)

HSP 1 Score: 228 bits (581), Expect = 2.570e-71
Identity = 108/165 (65.45%), Postives = 135/165 (81.82%), Query Frame = 0
Query:  146 MRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSLASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLLGSAAKIDFAAHVGGALFANVWFQLVRDTLMHERK--QREQSG 308
            MRR RVWT VTSNFSH  +FHL ANMY+LN++G DVA+VLG+HRFY+FYGT+G+ASSLASL+FRR+T+++  SLGASGAV + LWLYA  FP RRMS FG+D  ++MQE  +A+TV+D AGLLGS  KIDFAAH+GGA FAN WF L+RD L+ E+   +R +SG
Sbjct:    1 MRRGRVWTSVTSNFSHMSMFHLGANMYLLNRFGPDVADVLGAHRFYIFYGTSGIASSLASLTFRRVTKSNVLSLGASGAVVSVLWLYACFFPDRRMSFFGTDKTLTMQELVIAYTVIDAAGLLGSLGKIDFAAHLGGAFFANFWFYLLRDKLVREQAAGRRSKSG 165          
BLAST of Ggra4092.t1 vs. uniprot
Match: M1VA02 (Rhomboid domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VA02_CYAM1)

HSP 1 Score: 141 bits (356), Expect = 5.840e-36
Identity = 82/224 (36.61%), Postives = 120/224 (53.57%), Query Frame = 0
Query:  101 IKEKLSTGGGRDVFYITAVNVAIYTLWKIAPAS--LMHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSLASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLLGSAAKIDFAAHVGGALFANVWFQLVRDTLMHERKQREQSGGWRLSRFLSRTLRG 322
            ++   ++  GR +  +  +N  +Y  WK  P     M RHF  S+E +   R  T +TS+ SH G  HL  NM++L  +G DV +VLG  RF   Y      SS  SL ++RL  +   S+GASG+V A L ++A LFP  R SL+     ++ QE  L + + DV G++G    IDFAAH+GGA+F  ++F  + + L  E   R ++  W L    SRT  G
Sbjct:    5 VRRSWASREGRTILSLILLNGLVYLAWKSRPGGPPFMWRHFACSLESLYAGRTHTLLTSSISHMGFLHLLGNMFLLANFGLDVCKVLGPSRFLTLYAGGAFLSSAMSLLYKRLRLSGAVSIGASGSVMAVLVMFAMLFP--RSSLYVMGIKMTAQEACLLWVLFDVIGVVGRFGYIDFAAHLGGAIFGYLYFVYIEEHLREELALRRRARRWGLG---SRTTEG 223          
BLAST of Ggra4092.t1 vs. uniprot
Match: A0A7J7IRF8 (Rhomboid domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRF8_9RHOD)

HSP 1 Score: 142 bits (357), Expect = 7.690e-36
Identity = 78/205 (38.05%), Postives = 114/205 (55.61%), Query Frame = 0
Query:  110 GRDVFYITAVNVAIYTLWKIAPAS--LMHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSLASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLLGSAAKIDFAAHVGGALFANVWFQLVRDTLMHERKQREQSGGWRL 312
            GR +  + A+N  +Y  WK  P     M RHF  S+E +   R  T +TS+ SH G  HL  NM++L  +G DV + LG  RF   Y      SS  SL ++RL  +   S+GASG+V A L ++A LFPK  + + G    ++ +E  L + + DVAG++G    IDFAAH+GGALF  ++F  + + L  E + R ++  W L
Sbjct:   44 GRTILALIALNGMVYLGWKSRPGGPPFMWRHFACSLESIYAGRTHTLLTSSISHMGFLHLLGNMFLLANFGLDVCKALGPSRFLTLYAGGAFLSSAVSLLYKRLRLSGAVSVGASGSVMAILVMFAMLFPKASLYVMGIK--MTAKEACLLWVLFDVAGVVGRLGYIDFAAHLGGALFGYLYFSYIEERLREEMELRRRARRWGL 246          
BLAST of Ggra4092.t1 vs. uniprot
Match: A0A7V5I8P3 (Rhomboid family intramembrane serine protease n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I8P3_9BACT)

HSP 1 Score: 141 bits (356), Expect = 1.130e-34
Identity = 82/224 (36.61%), Postives = 120/224 (53.57%), Query Frame = 0
Query:  101 IKEKLSTGGGRDVFYITAVNVAIYTLWKIAPAS--LMHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSLASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLLGSAAKIDFAAHVGGALFANVWFQLVRDTLMHERKQREQSGGWRLSRFLSRTLRG 322
            ++   ++  GR +  +  +N  +Y  WK  P     M RHF  S+E +   R  T +TS+ SH G  HL  NM++L  +G DV +VLG  RF   Y      SS  SL ++RL  +   S+GASG+V A L ++A LFP  R SL+     ++ QE  L + + DV G++G    IDFAAH+GGA+F  ++F  + + L  E   R ++  W L    SRT  G
Sbjct:  169 VRRSWASREGRTILSLILLNGLVYLAWKSRPGGPPFMWRHFACSLESLYAGRTHTLLTSSISHMGFLHLLGNMFLLANFGLDVCKVLGPSRFLTLYAGGAFLSSAMSLLYKRLRLSGAVSIGASGSVMAVLVMFAMLFP--RSSLYVMGIKMTAQEACLLWVLFDVIGVVGRFGYIDFAAHLGGAIFGYLYFVYIEEHLREELALRRRARRWGLG---SRTTEG 387          
BLAST of Ggra4092.t1 vs. uniprot
Match: A0A838F0U9 (Rhomboid family intramembrane serine protease n=1 Tax=Bdellovibrionales bacterium TaxID=2053517 RepID=A0A838F0U9_9PROT)

HSP 1 Score: 109 bits (272), Expect = 6.780e-25
Identity = 67/185 (36.22%), Postives = 106/185 (57.30%), Query Frame = 0
Query:  116 ITAVNVAIYTLW----KIAPASLMHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSLAS--LSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLL----GSAAKIDFAAHVGGALFANVWF 290
            I  +N+ ++ LW    +  P  +M  HF  S E + + R+WT VTS FSH  + H+  NM+V   +G  +  VLGS RF+ F+  AGVA SL+   +S   L +    +LGASGAV+  + L+A LFP  ++ + G     ++   A+  T +D+ GL+    GSA+ I + AH+GGA+ A +++
Sbjct:   10 IVKLNIIVFLLWNFYGRFNPEFMMS-HFLVSGEALNQGRIWTLVTSVFSHTLLMHILLNMFVFYNFGVVIERVLGSKRFFWFFILAGVAGSLSHCLVSIFLLQQPQLAALGASGAVSGIVLLFALLFPHEKIYILGFIPAPAIWA-AMLITGIDLWGLISQTKGSASPIGYGAHLGGAISALIYY 192          
BLAST of Ggra4092.t1 vs. uniprot
Match: A0A2E3W2B7 (Rhomboid domain-containing protein n=1 Tax=Halobacteriovoraceae bacterium TaxID=2026745 RepID=A0A2E3W2B7_9PROT)

HSP 1 Score: 107 bits (267), Expect = 4.250e-24
Identity = 63/189 (33.33%), Postives = 103/189 (54.50%), Query Frame = 0
Query:  116 ITAVNVAIYTLWKIA----PASLMHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSL--ASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLL----GSAAKIDFAAHVGGALFANVWFQLVR 294
            I  +N+ ++  W+ +        M ++F  S + + + R W  ++S FSH   FH+  NM+VL+ +G  V ++ G   F +FY  AGV+ S   A+ S+  L   +  +LGASGA+A  + LYA LFPK+++ L G   + ++   AL F  +D+ GL+    G    I   AH+GGAL   ++F  +R
Sbjct:   17 IIMINIGVFLSWQYSFYEGSLQFMAQNFLVSWDALAKGRFWVLLSSAFSHNAFFHIFINMFVLHSFGTIVIQITGRKAFLVFYLVAGVSGSFLHAATSYFLLQEPYLNALGASGAIAGIILLYALLFPKKKILLLGFIPIGAIWG-ALLFVGVDLWGLIAQTRGGGFPIGHGAHLGGALMGALYFLWIR 204          
BLAST of Ggra4092.t1 vs. uniprot
Match: A0A2H0WF75 (Rhomboid domain-containing protein n=1 Tax=Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8 TaxID=1975526 RepID=A0A2H0WF75_9PROT)

HSP 1 Score: 108 bits (270), Expect = 7.690e-24
Identity = 68/188 (36.17%), Postives = 102/188 (54.26%), Query Frame = 0
Query:  115 YITAVNVAIYTLWKIAPAS----LMHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSLAS--LSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLL----GSAAKIDFAAHVGGALFANVWFQL 292
            +I A+N+ ++ LW  A        M  +F  S  G+   R+WT +TS FSH  + H+  NM+VLN +G  V  VLG   F LFY  A V SSL    +S   L      +LGASGA++  + L++ LFPK+++ +FG   + ++   AL F  +D+ GL+    G    I   AH+GGAL   +++ L
Sbjct:   92 WIIALNIGVFILWHAATRESSLIFMADNFLVSWTGLTEGRIWTLLTSEFSHNLLIHIFINMFVLNSFGPIVESVLGKKTFLLFYLLAAVVSSLCHSLVSAWILGEPDLPALGASGAISGLVLLFSMLFPKQKILIFGLIPIPALWG-ALLFIGLDIWGLIAQAEGGGLPIGHGAHLGGALTGILFYFL 278          
BLAST of Ggra4092.t1 vs. uniprot
Match: A0A2E5CC30 (Rhomboid domain-containing protein n=1 Tax=Peredibacter sp. TaxID=2024850 RepID=A0A2E5CC30_9PROT)

HSP 1 Score: 107 bits (266), Expect = 8.240e-24
Identity = 65/196 (33.16%), Postives = 103/196 (52.55%), Query Frame = 0
Query:  116 ITAVNVAIYTLWKIA----PASLMHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSL--ASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLL----GSAAKIDFAAHVGGALFANVWFQLVRDTLMHER 301
            I  +NV ++  W  +        M ++F  S + + + R W  +TS FSH   FH+  NM+VL+ +G  V ++ G   F  FY  AG++ S   A+ S+  L   +  +LGASGA+A  + LYA LFPK+++ L G   + ++   AL F  +D+ GL+    G    I   AH+GGAL   V++  +R     +R
Sbjct:   31 IIMINVGVFLAWLYSFYGGSLQFMAQNFLVSWDALVKGRFWVLLTSVFSHNAFFHIFINMFVLHSFGTVVIQITGRKAFLSFYLIAGLSGSFLHAATSYFLLNEPYLNALGASGAIAGIILLYALLFPKKKILLLGFIPIGAIWG-ALLFVGIDLWGLIAQTKGGGLPIGHGAHLGGALMGAVYYLWIRKKFKRDR 225          
BLAST of Ggra4092.t1 vs. uniprot
Match: A0A1F3SGD3 (Rhomboid domain-containing protein n=1 Tax=Bdellovibrionales bacterium GWA2_49_15 TaxID=1797384 RepID=A0A1F3SGD3_9PROT)

HSP 1 Score: 104 bits (260), Expect = 4.150e-23
Identity = 67/184 (36.41%), Postives = 103/184 (55.98%), Query Frame = 0
Query:  116 ITAVNVAIYTLWKIAPASL---MHRHFTNSVEGMRRARVWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVASSLAS--LSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVISMQEFALAFTVMDVAGLL----GSAAKIDFAAHVGGALFANVWF 290
            I  +NV I+ LW +    L   M  +F  S  G+   RVWT +TS FSH  ++HL  NM+VL  +G  +  +LG  +F+ FY  AG+ SS +   +    L R    +LGASGA++A + L+A +FPK ++ +FG   V ++   AL  + +D+ GL+    G    I + AH+GG LF  V++
Sbjct:   26 IIKLNVVIFFLWYLIGFRLPLFMIDNFLVSWTGLTEGRVWTLLTSVFSHNLLWHLFMNMFVLYSFGPALERILGFAKFFKFYLFAGIFSSFSHTVVCAWLLDRPGLAALGASGAISAVVILFALIFPKEKIFIFGLIPVPALGG-ALGLSALDLWGLISQTRGYDLPIGYGAHLGGVLFGAVYY 208          
The following BLAST results are available for this feature:
BLAST of Ggra4092.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0T01.330e-10751.37Presenilins-associated rhomboid-like protein, mito... [more]
R7QBZ82.570e-7165.45Rhomboid domain-containing protein n=1 Tax=Chondru... [more]
M1VA025.840e-3636.61Rhomboid domain-containing protein n=1 Tax=Cyanidi... [more]
A0A7J7IRF87.690e-3638.05Rhomboid domain-containing protein n=1 Tax=Cyanidi... [more]
A0A7V5I8P31.130e-3436.61Rhomboid family intramembrane serine protease n=1 ... [more]
A0A838F0U96.780e-2536.22Rhomboid family intramembrane serine protease n=1 ... [more]
A0A2E3W2B74.250e-2433.33Rhomboid domain-containing protein n=1 Tax=Halobac... [more]
A0A2H0WF757.690e-2436.17Rhomboid domain-containing protein n=1 Tax=Bdellov... [more]
A0A2E5CC308.240e-2433.16Rhomboid domain-containing protein n=1 Tax=Peredib... [more]
A0A1F3SGD34.150e-2336.41Rhomboid domain-containing protein n=1 Tax=Bdellov... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035952Rhomboid-like superfamilyGENE3D1.20.1540.10coord: 112..299
e-value: 9.3E-32
score: 112.2
IPR035952Rhomboid-like superfamilySUPERFAMILY144091Rhomboid-likecoord: 114..292
IPR022764Peptidase S54, rhomboid domainPFAMPF01694Rhomboidcoord: 148..290
e-value: 1.3E-25
score: 90.2
NoneNo IPR availablePANTHERPTHR43731RHOMBOID PROTEASEcoord: 38..303
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..236
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 191..209
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 271..275
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 248..270
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 294..329
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 276..293
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 210..214
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 237..247
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:101764..102839 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4092.t1Ggra4092.t1Gracilaria gracilis GNS1m malemRNAtig00000853_pilon 101764..102839 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4092.t1 ID=Ggra4092.t1|Name=Ggra4092.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=330bp
MRVFTIHRSAAQAFRRTVRGKRYCNRKTGLQLRANAATIGLFCFSAPQVL
DVGSNRIADQGEFRAQDSVYSRFSGVSSPEDVVEIIKDTYYDIHSKVDKL
IKEKLSTGGGRDVFYITAVNVAIYTLWKIAPASLMHRHFTNSVEGMRRAR
VWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVA
SSLASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVI
SMQEFALAFTVMDVAGLLGSAAKIDFAAHVGGALFANVWFQLVRDTLMHE
RKQREQSGGWRLSRFLSRTLRGLNRKESP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035952Rhomboid-like_sf
IPR022764Peptidase_S54_rhomboid_dom