Ggra4092.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4092.t1
Unique NameGgra4092.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:101764..102839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707143.1
PFAMsRhomboid
Max annot lvl2759|Eukaryota
KEGG koko:K09650
Evalue2.09e-40
EggNOG OGsCOG0705@1|root,KOG2980@2759|Eukaryota
EC3.4.21.105
Descriptionserine-type endopeptidase activity
COG categoryS
BRITEko00000,ko01000,ko01002,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4092Ggra4092Gracilaria gracilis GNS1m malegenetig00000853_pilon 101764..102839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4092.t1Ggra4092.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 101764..102839 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4092.t1.start1Ggra4092.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 101764..101766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4092.t1.CDS1Ggra4092.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 101764..102173 +
Ggra4092.t1.CDS2Ggra4092.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 102260..102839 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4092.t1.exon1Ggra4092.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 101764..102173 +
Ggra4092.t1.exon2Ggra4092.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 102260..102839 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4092.t1.intron1Ggra4092.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 102174..102259 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4092.t1.stop1Ggra4092.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 102837..102839 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4092.t1 ID=Ggra4092.t1|Name=Ggra4092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp
MRVFTIHRSAAQAFRRTVRGKRYCNRKTGLQLRANAATIGLFCFSAPQVL
DVGSNRIADQGEFRAQDSVYSRFSGVSSPEDVVEIIKDTYYDIHSKVDKL
IKEKLSTGGGRDVFYITAVNVAIYTLWKIAPASLMHRHFTNSVEGMRRAR
VWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVA
SSLASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVI
SMQEFALAFTVMDVAGLLGSAAKIDFAAHVGGALFANVWFQLVRDTLMHE
RKQREQSGGWRLSRFLSRTLRGLNRKESP*
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spliced messenger RNA

>Ggra4092.t1 ID=Ggra4092.t1|Name=Ggra4092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000853_pilon:101764..102839+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGTATTCACCATTCACAGAAGTGCAGCGCAAGCGTTTAGAAGAAC
GGTTCGAGGGAAGCGATATTGTAATCGAAAGACTGGTTTGCAGCTGAGGG
CAAATGCAGCCACTATTGGCTTGTTTTGCTTCTCAGCACCGCAAGTGCTT
GACGTCGGTAGCAATAGAATAGCAGATCAGGGTGAGTTTCGTGCACAAGA
TTCAGTATATTCCAGGTTTTCCGGCGTATCTTCACCAGAAGATGTGGTTG
AAATAATTAAGGATACGTACTATGACATTCATTCCAAGGTGGATAAGCTG
ATCAAGGAGAAGCTGTCGACTGGGGGCGGGAGGGATGTGTTTTATATCAC
TGCTGTTAACGTTGCTATCTACACATTGTGGAAGATAGCACCAGCTAGTT
TGATGCACAGACATTTCACTAATTCTGTGGAAGGGATGAGACGGGCACGA
GTGTGGACTTGCGTGACGTCCAACTTTTCACACAGGGGTATATTTCATCT
GGCGGCTAACATGTACGTGTTAAACAAGTACGGTGAAGATGTAGCCGAGG
TGCTAGGAAGCCATCGGTTCTACCTGTTTTACGGCACGGCGGGAGTAGCG
TCGTCGCTAGCAAGCCTGTCGTTTCGGCGGCTGACACGCAATCACTACCA
AAGTCTGGGAGCGAGTGGAGCGGTGGCCGCGACACTATGGCTGTACGCGA
GCTTATTCCCGAAGCGAAGGATGTCATTGTTCGGTTCCGATTACGTAATT
TCAATGCAAGAATTTGCGCTCGCATTCACAGTGATGGACGTTGCCGGGCT
GCTGGGGTCGGCAGCGAAGATCGATTTCGCGGCGCACGTGGGAGGCGCGC
TGTTTGCCAACGTCTGGTTCCAGCTGGTGCGCGACACACTAATGCACGAG
CGCAAGCAACGAGAGCAGAGTGGTGGATGGCGACTGTCGCGCTTTCTGTC
CAGAACGTTGCGCGGCCTGAATCGAAAGGAGAGCCCGTAG
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protein sequence of Ggra4092.t1

>Ggra4092.t1 ID=Ggra4092.t1|Name=Ggra4092.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=330bp
MRVFTIHRSAAQAFRRTVRGKRYCNRKTGLQLRANAATIGLFCFSAPQVL
DVGSNRIADQGEFRAQDSVYSRFSGVSSPEDVVEIIKDTYYDIHSKVDKL
IKEKLSTGGGRDVFYITAVNVAIYTLWKIAPASLMHRHFTNSVEGMRRAR
VWTCVTSNFSHRGIFHLAANMYVLNKYGEDVAEVLGSHRFYLFYGTAGVA
SSLASLSFRRLTRNHYQSLGASGAVAATLWLYASLFPKRRMSLFGSDYVI
SMQEFALAFTVMDVAGLLGSAAKIDFAAHVGGALFANVWFQLVRDTLMHE
RKQREQSGGWRLSRFLSRTLRGLNRKESP*
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mRNA from alignment at tig00000853_pilon:101764..102839+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4092.t1 ID=Ggra4092.t1|Name=Ggra4092.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1076bp|location=Sequence derived from alignment at tig00000853_pilon:101764..102839+ (Gracilaria gracilis GNS1m male)
ATGCGAGTATTCACCATTCACAGAAGTGCAGCGCAAGCGTTTAGAAGAAC
GGTTCGAGGGAAGCGATATTGTAATCGAAAGACTGGTTTGCAGCTGAGGG
CAAATGCAGCCACTATTGGCTTGTTTTGCTTCTCAGCACCGCAAGTGCTT
GACGTCGGTAGCAATAGAATAGCAGATCAGGGTGAGTTTCGTGCACAAGA
TTCAGTATATTCCAGGTTTTCCGGCGTATCTTCACCAGAAGATGTGGTTG
AAATAATTAAGGATACGTACTATGACATTCATTCCAAGGTGGATAAGCTG
ATCAAGGAGAAGCTGTCGACTGGGGGCGGGAGGGATGTGTTTTATATCAC
TGCTGTTAACGTTGCTATCTACACATTGTGGAAGATAGCACCAGCTAGTT
TGATGCACAGGTTCGTTTTGCTTGATTCCAAGAGTTGAATTTGATTTGCT
TATTGTATTGTTCCGCGTGGCTCACATTTTTGGTTACCCTTGGTAGACAT
TTCACTAATTCTGTGGAAGGGATGAGACGGGCACGAGTGTGGACTTGCGT
GACGTCCAACTTTTCACACAGGGGTATATTTCATCTGGCGGCTAACATGT
ACGTGTTAAACAAGTACGGTGAAGATGTAGCCGAGGTGCTAGGAAGCCAT
CGGTTCTACCTGTTTTACGGCACGGCGGGAGTAGCGTCGTCGCTAGCAAG
CCTGTCGTTTCGGCGGCTGACACGCAATCACTACCAAAGTCTGGGAGCGA
GTGGAGCGGTGGCCGCGACACTATGGCTGTACGCGAGCTTATTCCCGAAG
CGAAGGATGTCATTGTTCGGTTCCGATTACGTAATTTCAATGCAAGAATT
TGCGCTCGCATTCACAGTGATGGACGTTGCCGGGCTGCTGGGGTCGGCAG
CGAAGATCGATTTCGCGGCGCACGTGGGAGGCGCGCTGTTTGCCAACGTC
TGGTTCCAGCTGGTGCGCGACACACTAATGCACGAGCGCAAGCAACGAGA
GCAGAGTGGTGGATGGCGACTGTCGCGCTTTCTGTCCAGAACGTTGCGCG
GCCTGAATCGAAAGGAGAGCCCGTAG
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Coding sequence (CDS) from alignment at tig00000853_pilon:101764..102839+

>Ggra4092.t1 ID=Ggra4092.t1|Name=Ggra4092.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00000853_pilon:101764..102839+ (Gracilaria gracilis GNS1m male)
ATGCGAGTATTCACCATTCACAGAAGTGCAGCGCAAGCGTTTAGAAGAAC
GGTTCGAGGGAAGCGATATTGTAATCGAAAGACTGGTTTGCAGCTGAGGG
CAAATGCAGCCACTATTGGCTTGTTTTGCTTCTCAGCACCGCAAGTGCTT
GACGTCGGTAGCAATAGAATAGCAGATCAGGGTGAGTTTCGTGCACAAGA
TTCAGTATATTCCAGGTTTTCCGGCGTATCTTCACCAGAAGATGTGGTTG
AAATAATTAAGGATACGTACTATGACATTCATTCCAAGGTGGATAAGCTG
ATCAAGGAGAAGCTGTCGACTGGGGGCGGGAGGGATGTGTTTTATATCAC
TGCTGTTAACGTTGCTATCTACACATTGTGGAAGATAGCACCAGCTAGTT
TGATGCACAGACATTTCACTAATTCTGTGGAAGGGATGAGACGGGCACGA
GTGTGGACTTGCGTGACGTCCAACTTTTCACACAGGGGTATATTTCATCT
GGCGGCTAACATGTACGTGTTAAACAAGTACGGTGAAGATGTAGCCGAGG
TGCTAGGAAGCCATCGGTTCTACCTGTTTTACGGCACGGCGGGAGTAGCG
TCGTCGCTAGCAAGCCTGTCGTTTCGGCGGCTGACACGCAATCACTACCA
AAGTCTGGGAGCGAGTGGAGCGGTGGCCGCGACACTATGGCTGTACGCGA
GCTTATTCCCGAAGCGAAGGATGTCATTGTTCGGTTCCGATTACGTAATT
TCAATGCAAGAATTTGCGCTCGCATTCACAGTGATGGACGTTGCCGGGCT
GCTGGGGTCGGCAGCGAAGATCGATTTCGCGGCGCACGTGGGAGGCGCGC
TGTTTGCCAACGTCTGGTTCCAGCTGGTGCGCGACACACTAATGCACGAG
CGCAAGCAACGAGAGCAGAGTGGTGGATGGCGACTGTCGCGCTTTCTGTC
CAGAACGTTGCGCGGCCTGAATCGAAAGGAGAGCCCGTAG
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