Ggra4072.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4072.t1
Unique NameGgra4072.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length325
Homology
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BLAST of Ggra4072.t1 vs. uniprot
Match: A0A2V3IZD1 (AMP-binding domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZD1_9FLOR)

HSP 1 Score: 435 bits (1119), Expect = 6.390e-151
Identity = 232/324 (71.60%), Postives = 277/324 (85.49%), Query Frame = 0 
Query:    1 MQSASRRALASLRLVRARAAPRIAVRALSTASSSSTIGELLHAASAANPLKDAVKFMGSGDANSTVWTYSQLLSHVNALATGLSKLDYSPNDAVMTLLPPDSPEYSVLLLAASQIGAAVIPLPVPTDPKNVDIDALKAALDEHRPAALFIHGSYSTAEDADASRIFAASNPVVNALDPSISLNDAAGLLGFVPLTGRPFQSSQFPFLRHVVSTDDVNARGIITFRSLLVYSGESPAVASDAPLLVTPTGNASQSELISSAEQLCSSLRISSDHTAREGKIVTKPELSVKSATSLVATIMKHALWVSSAERDVKEVATTENALVV 324
            MQSA+RRA ASLR+ RARA  R  +R+++TA+++ +I +LLH+A+A +PLKDAVKFMG  + N+TVWTYSQL SHV+AL+TGLS L+YS NDA++TLLP DSPEY+VLLLAASQ+G ++IPLP P DP+ VD+DALKAAL+EHRPAAL IH S S  E AD+SRI AASN VVNALDPSI+LNDAAGLLGFVPLTGRPF S+QFPFLRH+VSTDDVNARG IT RSLLVYSGESP  AS+APLL+T  G ASQS+LI+ AE+LC+ + ISSD  A+EGK+VTKP LS  SATSLVA+IMKHALWV+SA+RD  EVA +ENALVV
Sbjct:    1 MQSATRRAAASLRIARARAL-RPPLRSIATAAAAPSIRDLLHSATADSPLKDAVKFMGYANENATVWTYSQLASHVSALSTGLSHLNYSQNDAILTLLPADSPEYTVLLLAASQLGISIIPLPTPADPQTVDVDALKAALNEHRPAALVIHSSCSVPEHADSSRILAASNSVVNALDPSIALNDAAGLLGFVPLTGRPFYSAQFPFLRHIVSTDDVNARGTITLRSLLVYSGESPYTASEAPLLITSAGQASQSQLIADAEKLCTKMSISSDPLAKEGKLVTKPALSTTSATSLVASIMKHALWVTSADRDKTEVAASENALVV 323
The following BLAST results are available for this feature:
BLAST of Ggra4072.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZD16.390e-15171.60AMP-binding domain-containing protein n=1 Tax=Grac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000873AMP-dependent synthetase/ligasePFAMPF00501AMP-bindingcoord: 47..158
e-value: 1.1E-11
score: 44.0
IPR042099ANL, N-terminal domainGENE3D3.40.50.12780coord: 21..249
e-value: 6.5E-18
score: 66.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..324
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableSUPERFAMILY56801Acetyl-CoA synthetase-likecoord: 35..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:59476..60450 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4072.t1Ggra4072.t1Gracilaria gracilis GNS1m malemRNAtig00000853_pilon 59476..60450 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4072.t1 ID=Ggra4072.t1|Name=Ggra4072.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=325bp
MQSASRRALASLRLVRARAAPRIAVRALSTASSSSTIGELLHAASAANPL
KDAVKFMGSGDANSTVWTYSQLLSHVNALATGLSKLDYSPNDAVMTLLPP
DSPEYSVLLLAASQIGAAVIPLPVPTDPKNVDIDALKAALDEHRPAALFI
HGSYSTAEDADASRIFAASNPVVNALDPSISLNDAAGLLGFVPLTGRPFQ
SSQFPFLRHVVSTDDVNARGIITFRSLLVYSGESPAVASDAPLLVTPTGN
ASQSELISSAEQLCSSLRISSDHTAREGKIVTKPELSVKSATSLVATIMK
HALWVSSAERDVKEVATTENALVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
IPR042099ANL_N_sf