Ggra4072.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4072.t1
Unique NameGgra4072.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:59476..60450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708831.1
PFAMsAMP-binding
Max annot lvl2759|Eukaryota
Evalue4.05e-20
EggNOG OGsCOG0318@1|root,2SE7J@2759|Eukaryota
DescriptionAMP-binding enzyme
COG categoryIQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4072Ggra4072Gracilaria gracilis GNS1m malegenetig00000853_pilon 59476..60450 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4072.t1.stop1Ggra4072.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 59476..59478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4072.t1.CDS1Ggra4072.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 59476..60450 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4072.t1.exon1Ggra4072.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 59476..60450 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4072.t1.start1Ggra4072.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 60448..60450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4072.t1Ggra4072.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 59476..60450 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4072.t1 ID=Ggra4072.t1|Name=Ggra4072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=325bp
MQSASRRALASLRLVRARAAPRIAVRALSTASSSSTIGELLHAASAANPL
KDAVKFMGSGDANSTVWTYSQLLSHVNALATGLSKLDYSPNDAVMTLLPP
DSPEYSVLLLAASQIGAAVIPLPVPTDPKNVDIDALKAALDEHRPAALFI
HGSYSTAEDADASRIFAASNPVVNALDPSISLNDAAGLLGFVPLTGRPFQ
SSQFPFLRHVVSTDDVNARGIITFRSLLVYSGESPAVASDAPLLVTPTGN
ASQSELISSAEQLCSSLRISSDHTAREGKIVTKPELSVKSATSLVATIMK
HALWVSSAERDVKEVATTENALVV*
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spliced messenger RNA

>Ggra4072.t1 ID=Ggra4072.t1|Name=Ggra4072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00000853_pilon:59476..60450- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCGGCTTCTCGCCGCGCGTTGGCGTCTCTTCGCCTCGTCCGCGC
CCGCGCCGCTCCCCGCATCGCCGTGCGCGCGCTCAGCACCGCCTCGAGCT
CGTCCACCATTGGCGAGCTCTTGCACGCCGCGTCGGCCGCCAATCCGCTC
AAGGATGCCGTCAAGTTCATGGGCTCTGGCGATGCTAACTCCACCGTGTG
GACCTATTCTCAATTGTTGTCTCACGTCAACGCTTTGGCTACCGGCCTTT
CCAAGCTCGACTACTCCCCGAATGACGCTGTCATGACTCTACTGCCCCCA
GATTCTCCGGAATACTCCGTGCTCCTGCTAGCTGCTTCTCAGATTGGCGC
TGCTGTCATCCCGCTCCCCGTACCGACCGACCCGAAAAACGTCGACATTG
ACGCGCTCAAAGCGGCTTTGGATGAGCATCGTCCAGCCGCATTGTTCATC
CATGGCAGCTATTCCACCGCAGAAGATGCTGATGCATCACGAATTTTTGC
TGCTTCTAATCCGGTCGTCAATGCGCTCGATCCGTCCATTTCTCTCAACG
ATGCGGCAGGATTGCTTGGTTTCGTACCACTCACAGGGAGACCTTTTCAA
TCATCACAGTTCCCGTTTTTGCGCCACGTCGTTTCCACGGATGATGTCAA
TGCGAGAGGCATTATTACCTTCCGTTCCCTTCTTGTATACTCCGGAGAGT
CGCCTGCCGTCGCATCAGACGCCCCTTTACTGGTCACGCCGACTGGAAAC
GCTTCTCAATCCGAACTTATCAGTAGCGCGGAACAACTGTGCTCTAGCTT
AAGAATTTCTTCAGATCATACCGCCAGAGAAGGAAAGATCGTTACCAAAC
CCGAGCTCAGCGTGAAGTCTGCCACATCACTAGTCGCGACAATCATGAAA
CATGCACTATGGGTTAGCTCCGCGGAACGCGATGTAAAGGAAGTTGCGAC
AACTGAAAACGCCCTCGTCGTTTGA
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protein sequence of Ggra4072.t1

>Ggra4072.t1 ID=Ggra4072.t1|Name=Ggra4072.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=325bp
MQSASRRALASLRLVRARAAPRIAVRALSTASSSSTIGELLHAASAANPL
KDAVKFMGSGDANSTVWTYSQLLSHVNALATGLSKLDYSPNDAVMTLLPP
DSPEYSVLLLAASQIGAAVIPLPVPTDPKNVDIDALKAALDEHRPAALFI
HGSYSTAEDADASRIFAASNPVVNALDPSISLNDAAGLLGFVPLTGRPFQ
SSQFPFLRHVVSTDDVNARGIITFRSLLVYSGESPAVASDAPLLVTPTGN
ASQSELISSAEQLCSSLRISSDHTAREGKIVTKPELSVKSATSLVATIMK
HALWVSSAERDVKEVATTENALVV*
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mRNA from alignment at tig00000853_pilon:59476..60450-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4072.t1 ID=Ggra4072.t1|Name=Ggra4072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00000853_pilon:59476..60450- (Gracilaria gracilis GNS1m male)
ATGCAGTCGGCTTCTCGCCGCGCGTTGGCGTCTCTTCGCCTCGTCCGCGC
CCGCGCCGCTCCCCGCATCGCCGTGCGCGCGCTCAGCACCGCCTCGAGCT
CGTCCACCATTGGCGAGCTCTTGCACGCCGCGTCGGCCGCCAATCCGCTC
AAGGATGCCGTCAAGTTCATGGGCTCTGGCGATGCTAACTCCACCGTGTG
GACCTATTCTCAATTGTTGTCTCACGTCAACGCTTTGGCTACCGGCCTTT
CCAAGCTCGACTACTCCCCGAATGACGCTGTCATGACTCTACTGCCCCCA
GATTCTCCGGAATACTCCGTGCTCCTGCTAGCTGCTTCTCAGATTGGCGC
TGCTGTCATCCCGCTCCCCGTACCGACCGACCCGAAAAACGTCGACATTG
ACGCGCTCAAAGCGGCTTTGGATGAGCATCGTCCAGCCGCATTGTTCATC
CATGGCAGCTATTCCACCGCAGAAGATGCTGATGCATCACGAATTTTTGC
TGCTTCTAATCCGGTCGTCAATGCGCTCGATCCGTCCATTTCTCTCAACG
ATGCGGCAGGATTGCTTGGTTTCGTACCACTCACAGGGAGACCTTTTCAA
TCATCACAGTTCCCGTTTTTGCGCCACGTCGTTTCCACGGATGATGTCAA
TGCGAGAGGCATTATTACCTTCCGTTCCCTTCTTGTATACTCCGGAGAGT
CGCCTGCCGTCGCATCAGACGCCCCTTTACTGGTCACGCCGACTGGAAAC
GCTTCTCAATCCGAACTTATCAGTAGCGCGGAACAACTGTGCTCTAGCTT
AAGAATTTCTTCAGATCATACCGCCAGAGAAGGAAAGATCGTTACCAAAC
CCGAGCTCAGCGTGAAGTCTGCCACATCACTAGTCGCGACAATCATGAAA
CATGCACTATGGGTTAGCTCCGCGGAACGCGATGTAAAGGAAGTTGCGAC
AACTGAAAACGCCCTCGTCGTTTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:59476..60450-

>Ggra4072.t1 ID=Ggra4072.t1|Name=Ggra4072.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00000853_pilon:59476..60450- (Gracilaria gracilis GNS1m male)
ATGCAGTCGGCTTCTCGCCGCGCGTTGGCGTCTCTTCGCCTCGTCCGCGC
CCGCGCCGCTCCCCGCATCGCCGTGCGCGCGCTCAGCACCGCCTCGAGCT
CGTCCACCATTGGCGAGCTCTTGCACGCCGCGTCGGCCGCCAATCCGCTC
AAGGATGCCGTCAAGTTCATGGGCTCTGGCGATGCTAACTCCACCGTGTG
GACCTATTCTCAATTGTTGTCTCACGTCAACGCTTTGGCTACCGGCCTTT
CCAAGCTCGACTACTCCCCGAATGACGCTGTCATGACTCTACTGCCCCCA
GATTCTCCGGAATACTCCGTGCTCCTGCTAGCTGCTTCTCAGATTGGCGC
TGCTGTCATCCCGCTCCCCGTACCGACCGACCCGAAAAACGTCGACATTG
ACGCGCTCAAAGCGGCTTTGGATGAGCATCGTCCAGCCGCATTGTTCATC
CATGGCAGCTATTCCACCGCAGAAGATGCTGATGCATCACGAATTTTTGC
TGCTTCTAATCCGGTCGTCAATGCGCTCGATCCGTCCATTTCTCTCAACG
ATGCGGCAGGATTGCTTGGTTTCGTACCACTCACAGGGAGACCTTTTCAA
TCATCACAGTTCCCGTTTTTGCGCCACGTCGTTTCCACGGATGATGTCAA
TGCGAGAGGCATTATTACCTTCCGTTCCCTTCTTGTATACTCCGGAGAGT
CGCCTGCCGTCGCATCAGACGCCCCTTTACTGGTCACGCCGACTGGAAAC
GCTTCTCAATCCGAACTTATCAGTAGCGCGGAACAACTGTGCTCTAGCTT
AAGAATTTCTTCAGATCATACCGCCAGAGAAGGAAAGATCGTTACCAAAC
CCGAGCTCAGCGTGAAGTCTGCCACATCACTAGTCGCGACAATCATGAAA
CATGCACTATGGGTTAGCTCCGCGGAACGCGATGTAAAGGAAGTTGCGAC
AACTGAAAACGCCCTCGTCGTTTGA
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