Ggra3634.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3634.t1
Unique NameGgra3634.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length624
Homology
BLAST of Ggra3634.t1 vs. uniprot
Match: B1I2F3 (Copper amine oxidase domain protein n=1 Tax=Desulforudis audaxviator (strain MP104C) TaxID=477974 RepID=B1I2F3_DESAP)

HSP 1 Score: 87.4 bits (215), Expect = 2.920e-15
Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 0
Query:  283 FITKTGQKYHVDGCKWLSRSKIPKDCP---PQGYRPCRVCLPGGAPLGAGSSFVEREVEEPCSSEVYVAPKAFYITNTGVKYHVDGCKWLSRSKIPR---DSPPVGYDPCRVCLP 391
            +ITKTG KYH +GC++L+RSKIP D       GY PC VC PG       S  +      P   ++       Y+T TG KYH  GC++LS+S+IP    ++   GY  C VC P
Sbjct:  185 YITKTGAKYHRNGCQYLARSKIPIDLSNAVASGYTPCSVCNPGQISSSTSSPILTMPSSTP---QIQKQDVTVYVTRTGSKYHRGGCRYLSKSQIPMSLSNAKASGYTACSVCGP 296          
BLAST of Ggra3634.t1 vs. uniprot
Match: A0A1I7HBP6 (Uncharacterized protein n=2 Tax=unclassified Butyrivibrio TaxID=2639466 RepID=A0A1I7HBP6_9FIRM)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-11
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 0
Query:  283 FITKTGQKYHVDGCKWLSRSKIP---KDCPPQGYRPCRVCLPGGAPLGAGSSFVERE-VEEPCSSEVYV--------APKAFYITNTGVKYHVDGCKWLSRSKIP---RDSPPVGYDPCRVCLPNGVPREST 399
            ++TKTG+KYH DGC  LS+SKI    +D   +GY  C+ C P      + ++ ++   V  P  +                 Y T TG KYH DGC+ L +SKI    + +   GY+ C+VC P  +   ST
Sbjct:   39 YLTKTGEKYHSDGCSSLSKSKIATTLQDAVDKGYEACKKCKPPKLDSTSQAAALQANAVAAPAKTXXXXXXXXAASNGDTVVYTTKTGTKYHADGCRSLGKSKIQTTLQSAVDKGYEACKVCKPPKLATAST 170          
BLAST of Ggra3634.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Butyrivibrio sp. LB2008 TaxID=1408305 RepID=UPI000684C06F (hypothetical protein n=1 Tax=Butyrivibrio sp. LB2008 TaxID=1408305 RepID=UPI000684C06F)

HSP 1 Score: 74.3 bits (181), Expect = 2.700e-11
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 0
Query:  208 FVTLTGRKYHAKGCRWLSRSCIPKTTPPP---GLEPCSTCRPQLVSQENRSSSPIFRETSRTGIVSTTSSYRQESGKYFITKTGQKYHVDGCKWLSRSKIP---KDCPPQGYRPCRVCLP 321
            +VT TG+KYH  GC  LS+S I KT       G EPC  C P  +   +   +      +    V+ +++    +   + TKTG+KYH DGC+ L +SKI    ++   +GY PC+ C P
Sbjct:   39 YVTKTGKKYHNAGCSSLSKSKIEKTLQSAVDNGYEPCKKCNPPKLDTASSEPAATTNVAAAPANVAKSTATTNGNTTVYTTKTGKKYHSDGCQSLGQSKIETTLQNAVDKGYEPCKKCNP 158          
BLAST of Ggra3634.t1 vs. uniprot
Match: A0A1G5GEF7 (Uncharacterized protein n=1 Tax=Butyrivibrio hungatei TaxID=185008 RepID=A0A1G5GEF7_9FIRM)

HSP 1 Score: 69.3 bits (168), Expect = 1.370e-9
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 0
Query:  208 FVTLTGRKYHAKGCRWLSRSCIPKTTPPP---GLEPCSTCRPQLVSQENRSSSPIFRETSRTGIVSTTSSYRQESGKYFITKTGQKYHVDGCKWLSRSKIP---KDCPPQGYRPCRVCLP 321
            ++T TG KYH  GC  LS+S I  T       G E C  C+P  +   +  ++      +    V+T ++        + TK+G+KYH DGCK L +SKI    +    +GY  C++C P
Sbjct:   39 YITKTGEKYHNDGCSSLSKSKIQTTLQSAVDKGYEACKKCKPPKLDTASADTAVKTNVAAAPANVATPAAATNGDTTVYTTKSGKKYHADGCKSLGKSKIKTTLQSAVDKGYEACKICKP 158          
BLAST of Ggra3634.t1 vs. uniprot
Match: A0A2D7CSY5 (Exonuclease domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7CSY5_9PROT)

HSP 1 Score: 68.9 bits (167), Expect = 1.910e-9
Identity = 58/173 (33.53%), Postives = 83/173 (47.98%), Query Frame = 0
Query:   14 FVWDSGTTGKDPHLDGIRTLAIVEYNSSDDYVTR-FNTAVGPRDVTVVEHYDPRAPS---FATAWKKFASFVETFSD--GNDP--LLVSHNA-SFDVSFLKAELARECMSLPSNWRFVCSLQLARTLNIESNSHSQSDLADHYGVVPDREHHAATDVMTLRDILIAMSEEYCI 177
            F+ D  TTG D      R   I E +  D    R F+  V P      +  +    S   FA   K F   V+   D  GNDP   ++ HN  +FD SFL+AEL R  + LPS+W+++ +L++AR++      H+Q  L  H+ +     H AA DVM L+ IL    E Y +
Sbjct:    4 FILDLETTGLD-----FRKHRITEISLLDMQENRIFSKMVHPEQELTPKAMEITGKSLIDFARE-KPFRFIVDELMDFIGNDPDTYIIGHNLDNFDKSFLQAELQRCAVDLPSSWKYIDTLKVARSILPHLPRHTQELLRKHFHISTTNAHTAAKDVMDLQLILFRFMENYTL 170          
BLAST of Ggra3634.t1 vs. uniprot
Match: A0A2V3J4A4 (DNA polymerase III subunit epsilon n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4A4_9FLOR)

HSP 1 Score: 69.7 bits (169), Expect = 4.110e-9
Identity = 52/169 (30.77%), Postives = 78/169 (46.15%), Query Frame = 0
Query:   13 LFVWDSGTTGKDPHLDGIRTLAIVEYNSSDDYVT--RFNTAVGP----------RDVTVVEHYDPRAPSFATAWKKFASFVETFS-DGNDPLLVSHNASFDVSFLKAELARECMSLPSNWRFVCSLQLARTLNIESNSHSQSDLADHYGVVPDREHHAATDVMTLRDIL 168
            + +WD+ TTG  P  + I  +A++E   +    T   F++ V P          R   +       APSF   W     ++   S     P+LV+HN SFD+SFLK+EL R   SLP +W F CSL+    +    +S S + L     +  +  H A +DV T   I+
Sbjct:   16 IIIWDTETTGLSPSKNHIVEIAMMELECTSPKSTPYTFSSLVHPPGESAPRAASRVHGITNDMMQDAPSFDKVWDGVLEYISYVSHQRGKPILVAHNLSFDLSFLKSELRRIGESLP-DWDFACSLRDIAKIVWPGHSASLASLGQLLSIQNEEAHRALSDVETTSRII 183          
BLAST of Ggra3634.t1 vs. uniprot
Match: 3'-5' exonuclease n=1 Tax=Symbiobacterium terraclitae TaxID=557451 RepID=UPI001AE3B895 (3'-5' exonuclease n=1 Tax=Symbiobacterium terraclitae TaxID=557451 RepID=UPI001AE3B895)

HSP 1 Score: 65.9 bits (159), Expect = 8.000e-9
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 0
Query:   88 NDPLLVSHNASFDVSFLKAELARECMSLPSNWRFVCSLQLARTLNIESNSHSQSDLADHYGVVPDREHHAATDVMT---LRDILIAMSEE 174
            ++PLLV+HNASFD+ FL  ELAR  M+ P     +C+++L+R L     SH    L DH+G+  DR H A  DV     L D L+A +EE
Sbjct:   83 DEPLLVAHNASFDLRFLNQELARAGMA-PYAGPVLCTMRLSRRLFPVLPSHRLEALLDHWGIHADRHHRAMDDVRATAQLLDRLVAAAEE 171          
BLAST of Ggra3634.t1 vs. uniprot
Match: A0A6N9CB05 (TNase-like domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6N9CB05_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 1.240e-8
Identity = 50/132 (37.88%), Postives = 67/132 (50.76%), Query Frame = 0
Query:  269 VSTTSSYRQESGKYFITKTGQKYHVDGCKWLSRSKIPKDC--PPQGYRPCRVCLPGGAPLGAGSSF-----VEREVEEPCSSEVYVAPKAFYITNTGVKYHVDGCKWLSRSKIPRD--SPPVGYDPCRVCLP 391
            +S+  S + ES  Y +T++G+KYH DGC+ LS+SKI        Q Y PC  C P  +   A  +F     +   V+    S+VYV       T TG KYH  GC+ LS+SKIP    +    Y PC  C P
Sbjct:  158 LSSLVSTKLESQVY-VTRSGKKYHRDGCQSLSKSKIAISLVEAQQKYSPCGRCNPPESLGPAQPAFPAQPDLSPAVDRKSGSQVYV-------TRTGKKYHRAGCRSLSKSKIPMSLAAAKQRYGPCGRCNP 281          
BLAST of Ggra3634.t1 vs. uniprot
Match: DNA polymerase III subunit epsilon n=1 Tax=Aerococcus urinae TaxID=1376 RepID=UPI0015ECBA81 (DNA polymerase III subunit epsilon n=1 Tax=Aerococcus urinae TaxID=1376 RepID=UPI0015ECBA81)

HSP 1 Score: 68.6 bits (166), Expect = 1.980e-8
Identity = 52/185 (28.11%), Postives = 93/185 (50.27%), Query Frame = 0
Query:    1 MSSISASVPPYKLFVWDSGTTGKDPHLDGIRTLAIVEYNSSDDYVT-RFNTAVGP---------RDVTVVEHYDPRAPSFATAWKKFASFVETFSDGNDPLLVSHNASFDVSFLKAELARECMSLPSNWRFVCSLQLARTLNIESNSHSQSDLADHYGVVPDREHHAATDVMTLRDILIAMSEEY 175
            ++S +  +   + F +D  TTG + + D I  LAI++Y +   YV  +F+T + P         R   + +     AP+  TA K    F+E    G + ++ +HNASFD+S LKA L R  +S  +N +++ +L  +R L  ++ +H    L  H  +V +  H A  D     D+L+ + +++
Sbjct:   62 LTSKTTKILKNEFFAFDIETTGLNSYSDRIVELAIIKYVNG--YVADQFHTLINPGFSMPASASRINNITDELLLHAPTEDTAIKMAYPFLEPILSG-ESIICAHNASFDLSLLKAALRRNGIS--ANIKYIDTLSESRKLIKDTPNHKLGTLTKHLNIVNNDPHRATGDAKACGDLLLKLIDKF 241          
BLAST of Ggra3634.t1 vs. uniprot
Match: A0A843A3X1 (Thermonuclease family protein n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A843A3X1_9ARCH)

HSP 1 Score: 67.0 bits (162), Expect = 2.090e-8
Identity = 44/143 (30.77%), Postives = 62/143 (43.36%), Query Frame = 0
Query:  417 RAPPNTGTYYITTTGTRYHVDGCKWLSRSKIP---RDAPPSGYAPCRVCLPNGTTPLGTAEESQDRV-RESSLHSKSENGRCRNEDSQDSGSVPSNSRQARFYTTRTGRKFHIGTCKHLRNSKTATD--SPPPEFEACAVCLP 553
            +A P + T YIT +G +YH DGC+++S+SK+     DA   GY PC VC P         ++    V RES   + +E G                  +   Y TRTG K+H   C++L  S            +  C VC P
Sbjct:  177 QARPTSQTVYITVSGKKYHRDGCRYISKSKVAISLADAIAKGYGPCSVCNPPTADTATMVQQPTTAVKRESVAAATTETG------------------EQIVYVTRTGSKYHKAGCRYLSKSAIPMKLKDAAARYGPCGVCNP 301          
The following BLAST results are available for this feature:
BLAST of Ggra3634.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B1I2F32.920e-1540.87Copper amine oxidase domain protein n=1 Tax=Desulf... [more]
A0A1I7HBP61.170e-1134.09Uncharacterized protein n=2 Tax=unclassified Butyr... [more]
hypothetical protein n=1 Tax=Butyrivibrio sp. LB2008 TaxID=1408305 RepID=UPI000684C06F2.700e-1135.00hypothetical protein n=1 Tax=Butyrivibrio sp. LB20... [more]
A0A1G5GEF71.370e-932.50Uncharacterized protein n=1 Tax=Butyrivibrio hunga... [more]
A0A2D7CSY51.910e-933.53Exonuclease domain-containing protein n=1 Tax=Rhod... [more]
A0A2V3J4A44.110e-930.77DNA polymerase III subunit epsilon n=1 Tax=Gracila... [more]
3'-5' exonuclease n=1 Tax=Symbiobacterium terraclitae TaxID=557451 RepID=UPI001AE3B8958.000e-944.443'-5' exonuclease n=1 Tax=Symbiobacterium terracli... [more]
A0A6N9CB051.240e-837.88TNase-like domain-containing protein n=1 Tax=Candi... [more]
DNA polymerase III subunit epsilon n=1 Tax=Aerococcus urinae TaxID=1376 RepID=UPI0015ECBA811.980e-828.11DNA polymerase III subunit epsilon n=1 Tax=Aerococ... [more]
A0A843A3X12.090e-830.77Thermonuclease family protein n=1 Tax=Thermoplasma... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 12..177
e-value: 7.3E-4
score: 16.2
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 66..164
e-value: 1.7E-7
score: 31.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 8..176
e-value: 2.7E-23
score: 84.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 584..623
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 588..613
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 470..511
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..497
NoneNo IPR availableCDDcd06127DEDDhcoord: 20..169
e-value: 4.28813E-23
score: 94.2896
IPR040393Three-prime repair exonuclease 1/2PANTHERPTHR13058THREE PRIME REPAIR EXONUCLEASE 1, 2coord: 63..176
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 20..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:373035..374906 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3634.t1Ggra3634.t1Gracilaria gracilis GNS1m malemRNAtig00000850_pilon 373035..374906 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3634.t1 ID=Ggra3634.t1|Name=Ggra3634.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MSSISASVPPYKLFVWDSGTTGKDPHLDGIRTLAIVEYNSSDDYVTRFNT
AVGPRDVTVVEHYDPRAPSFATAWKKFASFVETFSDGNDPLLVSHNASFD
VSFLKAELARECMSLPSNWRFVCSLQLARTLNIESNSHSQSDLADHYGVV
PDREHHAATDVMTLRDILIAMSEEYCILPLLYRDAQKPSFFDRVPELQSD
EKREARFFVTLTGRKYHAKGCRWLSRSCIPKTTPPPGLEPCSTCRPQLVS
QENRSSSPIFRETSRTGIVSTTSSYRQESGKYFITKTGQKYHVDGCKWLS
RSKIPKDCPPQGYRPCRVCLPGGAPLGAGSSFVEREVEEPCSSEVYVAPK
AFYITNTGVKYHVDGCKWLSRSKIPRDSPPVGYDPCRVCLPNGVPRESTR
SVLASQRNSSGSSSFSRAPPNTGTYYITTTGTRYHVDGCKWLSRSKIPRD
APPSGYAPCRVCLPNGTTPLGTAEESQDRVRESSLHSKSENGRCRNEDSQ
DSGSVPSNSRQARFYTTRTGRKFHIGTCKHLRNSKTATDSPPPEFEACAV
CLPYGVDPVHLAHGEGKAVEENITKLAKFPSSCETTEIRTPERSKKPIPG
NKLGEEKESKGSPRSAFDFAVTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR036397RNaseH_sf
IPR040393TREX1/2
IPR012337RNaseH-like_sf