Ggra3634.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3634.t1
Unique Name	Ggra3634.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:373035..374906 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	477974.Daud_0706
PFAMs	Cu_amine_oxidN1
Max annot lvl	186801\|Clostridia
Evalue	3.64e-16
EggNOG OGs	COG0103@1\|root,COG2333@1\|root,COG0103@2\|Bacteria,COG2333@2\|Bacteria,1VAS8@1239\|Firmicutes,25E5F@186801\|Clostridia,262TF@186807\|Peptococcaceae
Description	PFAM copper amine oxidase domain protein
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3634	Ggra3634	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 373035..374906 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3634.t1.stop1	Ggra3634.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 373035..373037 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3634.t1.CDS1	Ggra3634.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 373035..374906 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3634.t1.exon1	Ggra3634.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 373035..374906 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3634.t1.start1	Ggra3634.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 374904..374906 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3634.t1	Ggra3634.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 373035..374906 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:373035..374906-
coding sequence from alignment at tig00000850_pilon:373035..374906-

mRNA sequence

>Ggra3634.t1 ID=Ggra3634.t1|Name=Ggra3634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp
MSSISASVPPYKLFVWDSGTTGKDPHLDGIRTLAIVEYNSSDDYVTRFNT
AVGPRDVTVVEHYDPRAPSFATAWKKFASFVETFSDGNDPLLVSHNASFD
VSFLKAELARECMSLPSNWRFVCSLQLARTLNIESNSHSQSDLADHYGVV
PDREHHAATDVMTLRDILIAMSEEYCILPLLYRDAQKPSFFDRVPELQSD
EKREARFFVTLTGRKYHAKGCRWLSRSCIPKTTPPPGLEPCSTCRPQLVS
QENRSSSPIFRETSRTGIVSTTSSYRQESGKYFITKTGQKYHVDGCKWLS
RSKIPKDCPPQGYRPCRVCLPGGAPLGAGSSFVEREVEEPCSSEVYVAPK
AFYITNTGVKYHVDGCKWLSRSKIPRDSPPVGYDPCRVCLPNGVPRESTR
SVLASQRNSSGSSSFSRAPPNTGTYYITTTGTRYHVDGCKWLSRSKIPRD
APPSGYAPCRVCLPNGTTPLGTAEESQDRVRESSLHSKSENGRCRNEDSQ
DSGSVPSNSRQARFYTTRTGRKFHIGTCKHLRNSKTATDSPPPEFEACAV
CLPYGVDPVHLAHGEGKAVEENITKLAKFPSSCETTEIRTPERSKKPIPG
NKLGEEKESKGSPRSAFDFAVTF*

spliced messenger RNA

>Ggra3634.t1 ID=Ggra3634.t1|Name=Ggra3634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000850_pilon:373035..374906- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCAATTTCAGCATCCGTACCACCCTATAAGCTATTCGTTTGGGA
TAGTGGCACTACTGGCAAGGACCCGCACCTCGATGGCATAAGAACTCTAG
CCATTGTGGAGTACAACAGCTCCGATGACTATGTAACGCGCTTCAACACG
GCAGTTGGTCCTCGAGATGTCACCGTGGTGGAGCATTATGATCCTCGTGC
CCCATCCTTCGCCACTGCGTGGAAAAAATTCGCATCGTTTGTCGAAACGT
TCTCTGATGGGAACGATCCTCTGCTCGTCTCTCACAATGCGTCTTTCGAT
GTATCCTTTCTGAAAGCAGAGCTTGCTCGAGAGTGTATGAGCTTGCCGTC
AAACTGGCGCTTTGTCTGCTCCTTGCAGCTCGCACGCACTCTGAACATTG
AATCCAATTCTCACTCACAGTCTGATCTGGCCGACCATTATGGAGTTGTG
CCGGATCGCGAGCATCATGCAGCGACAGATGTAATGACCCTCCGAGACAT
TCTGATCGCCATGAGCGAGGAGTACTGTATCTTACCCTTGCTGTACCGTG
ATGCCCAGAAGCCCTCGTTCTTTGATAGGGTTCCCGAGTTACAAAGTGAT
GAAAAGCGGGAGGCCCGCTTCTTTGTGACTTTGACCGGTCGAAAGTATCA
TGCAAAAGGTTGTAGATGGCTTTCCCGCTCTTGTATACCAAAGACTACAC
CTCCCCCTGGTTTGGAGCCCTGTTCAACGTGCCGGCCACAACTTGTCTCT
CAAGAAAACCGTTCATCATCGCCCATATTCAGAGAAACATCTCGTACTGG
TATAGTGTCAACTACAAGCTCTTACAGGCAGGAAAGTGGCAAGTATTTCA
TTACAAAAACAGGACAAAAGTATCATGTAGACGGTTGCAAATGGTTGAGC
AGATCCAAAATACCTAAGGATTGCCCACCACAAGGTTATCGTCCTTGTCG
CGTCTGTCTTCCTGGTGGGGCACCTTTGGGAGCTGGCTCTTCATTTGTGG
AAAGGGAAGTCGAAGAGCCCTGCTCGTCAGAGGTGTATGTTGCTCCTAAG
GCATTCTACATCACAAACACAGGTGTGAAATACCATGTCGACGGGTGTAA
GTGGCTGAGCCGATCGAAGATTCCCAGAGATTCTCCACCTGTTGGATATG
ACCCTTGTCGTGTATGTTTACCGAACGGTGTTCCAAGGGAAAGCACACGT
TCAGTTCTCGCATCCCAACGAAATTCATCTGGCAGCAGTTCGTTCTCTCG
TGCACCACCAAACACGGGAACATATTACATCACAACTACAGGTACAAGAT
ATCACGTTGATGGCTGCAAGTGGCTTAGTCGGTCGAAGATCCCTAGAGAT
GCTCCACCGTCAGGTTATGCCCCTTGTCGGGTCTGTTTACCGAACGGAAC
AACTCCATTAGGAACAGCCGAGGAAAGTCAAGACCGTGTTCGTGAATCAT
CACTGCATTCAAAAAGTGAAAACGGCCGTTGTAGAAACGAGGATTCTCAG
GACTCGGGATCTGTGCCAAGCAACTCAAGACAAGCGAGATTCTACACAAC
GAGAACGGGACGAAAATTCCACATCGGAACATGCAAGCATCTCCGCAATT
CGAAAACTGCAACAGACTCGCCGCCTCCTGAATTCGAAGCCTGTGCAGTT
TGTCTTCCGTACGGTGTTGACCCCGTCCATTTGGCTCATGGTGAAGGGAA
GGCGGTAGAAGAAAACATTACCAAGCTCGCTAAGTTCCCCTCGAGCTGCG
AAACGACCGAAATCAGGACACCCGAACGTTCGAAGAAGCCCATTCCAGGA
AACAAGCTGGGCGAAGAGAAAGAATCAAAGGGCTCACCTCGCTCTGCTTT
CGATTTCGCAGTCACGTTCTAG

protein sequence of Ggra3634.t1

>Ggra3634.t1 ID=Ggra3634.t1|Name=Ggra3634.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MSSISASVPPYKLFVWDSGTTGKDPHLDGIRTLAIVEYNSSDDYVTRFNT
AVGPRDVTVVEHYDPRAPSFATAWKKFASFVETFSDGNDPLLVSHNASFD
VSFLKAELARECMSLPSNWRFVCSLQLARTLNIESNSHSQSDLADHYGVV
PDREHHAATDVMTLRDILIAMSEEYCILPLLYRDAQKPSFFDRVPELQSD
EKREARFFVTLTGRKYHAKGCRWLSRSCIPKTTPPPGLEPCSTCRPQLVS
QENRSSSPIFRETSRTGIVSTTSSYRQESGKYFITKTGQKYHVDGCKWLS
RSKIPKDCPPQGYRPCRVCLPGGAPLGAGSSFVEREVEEPCSSEVYVAPK
AFYITNTGVKYHVDGCKWLSRSKIPRDSPPVGYDPCRVCLPNGVPRESTR
SVLASQRNSSGSSSFSRAPPNTGTYYITTTGTRYHVDGCKWLSRSKIPRD
APPSGYAPCRVCLPNGTTPLGTAEESQDRVRESSLHSKSENGRCRNEDSQ
DSGSVPSNSRQARFYTTRTGRKFHIGTCKHLRNSKTATDSPPPEFEACAV
CLPYGVDPVHLAHGEGKAVEENITKLAKFPSSCETTEIRTPERSKKPIPG
NKLGEEKESKGSPRSAFDFAVTF*

mRNA from alignment at tig00000850_pilon:373035..374906-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3634.t1 ID=Ggra3634.t1|Name=Ggra3634.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000850_pilon:373035..374906- (Gracilaria gracilis GNS1m male)
ATGTCTTCAATTTCAGCATCCGTACCACCCTATAAGCTATTCGTTTGGGA
TAGTGGCACTACTGGCAAGGACCCGCACCTCGATGGCATAAGAACTCTAG
CCATTGTGGAGTACAACAGCTCCGATGACTATGTAACGCGCTTCAACACG
GCAGTTGGTCCTCGAGATGTCACCGTGGTGGAGCATTATGATCCTCGTGC
CCCATCCTTCGCCACTGCGTGGAAAAAATTCGCATCGTTTGTCGAAACGT
TCTCTGATGGGAACGATCCTCTGCTCGTCTCTCACAATGCGTCTTTCGAT
GTATCCTTTCTGAAAGCAGAGCTTGCTCGAGAGTGTATGAGCTTGCCGTC
AAACTGGCGCTTTGTCTGCTCCTTGCAGCTCGCACGCACTCTGAACATTG
AATCCAATTCTCACTCACAGTCTGATCTGGCCGACCATTATGGAGTTGTG
CCGGATCGCGAGCATCATGCAGCGACAGATGTAATGACCCTCCGAGACAT
TCTGATCGCCATGAGCGAGGAGTACTGTATCTTACCCTTGCTGTACCGTG
ATGCCCAGAAGCCCTCGTTCTTTGATAGGGTTCCCGAGTTACAAAGTGAT
GAAAAGCGGGAGGCCCGCTTCTTTGTGACTTTGACCGGTCGAAAGTATCA
TGCAAAAGGTTGTAGATGGCTTTCCCGCTCTTGTATACCAAAGACTACAC
CTCCCCCTGGTTTGGAGCCCTGTTCAACGTGCCGGCCACAACTTGTCTCT
CAAGAAAACCGTTCATCATCGCCCATATTCAGAGAAACATCTCGTACTGG
TATAGTGTCAACTACAAGCTCTTACAGGCAGGAAAGTGGCAAGTATTTCA
TTACAAAAACAGGACAAAAGTATCATGTAGACGGTTGCAAATGGTTGAGC
AGATCCAAAATACCTAAGGATTGCCCACCACAAGGTTATCGTCCTTGTCG
CGTCTGTCTTCCTGGTGGGGCACCTTTGGGAGCTGGCTCTTCATTTGTGG
AAAGGGAAGTCGAAGAGCCCTGCTCGTCAGAGGTGTATGTTGCTCCTAAG
GCATTCTACATCACAAACACAGGTGTGAAATACCATGTCGACGGGTGTAA
GTGGCTGAGCCGATCGAAGATTCCCAGAGATTCTCCACCTGTTGGATATG
ACCCTTGTCGTGTATGTTTACCGAACGGTGTTCCAAGGGAAAGCACACGT
TCAGTTCTCGCATCCCAACGAAATTCATCTGGCAGCAGTTCGTTCTCTCG
TGCACCACCAAACACGGGAACATATTACATCACAACTACAGGTACAAGAT
ATCACGTTGATGGCTGCAAGTGGCTTAGTCGGTCGAAGATCCCTAGAGAT
GCTCCACCGTCAGGTTATGCCCCTTGTCGGGTCTGTTTACCGAACGGAAC
AACTCCATTAGGAACAGCCGAGGAAAGTCAAGACCGTGTTCGTGAATCAT
CACTGCATTCAAAAAGTGAAAACGGCCGTTGTAGAAACGAGGATTCTCAG
GACTCGGGATCTGTGCCAAGCAACTCAAGACAAGCGAGATTCTACACAAC
GAGAACGGGACGAAAATTCCACATCGGAACATGCAAGCATCTCCGCAATT
CGAAAACTGCAACAGACTCGCCGCCTCCTGAATTCGAAGCCTGTGCAGTT
TGTCTTCCGTACGGTGTTGACCCCGTCCATTTGGCTCATGGTGAAGGGAA
GGCGGTAGAAGAAAACATTACCAAGCTCGCTAAGTTCCCCTCGAGCTGCG
AAACGACCGAAATCAGGACACCCGAACGTTCGAAGAAGCCCATTCCAGGA
AACAAGCTGGGCGAAGAGAAAGAATCAAAGGGCTCACCTCGCTCTGCTTT
CGATTTCGCAGTCACGTTCTAG

Coding sequence (CDS) from alignment at tig00000850_pilon:373035..374906-

>Ggra3634.t1 ID=Ggra3634.t1|Name=Ggra3634.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00000850_pilon:373035..374906- (Gracilaria gracilis GNS1m male)
ATGTCTTCAATTTCAGCATCCGTACCACCCTATAAGCTATTCGTTTGGGA
TAGTGGCACTACTGGCAAGGACCCGCACCTCGATGGCATAAGAACTCTAG
CCATTGTGGAGTACAACAGCTCCGATGACTATGTAACGCGCTTCAACACG
GCAGTTGGTCCTCGAGATGTCACCGTGGTGGAGCATTATGATCCTCGTGC
CCCATCCTTCGCCACTGCGTGGAAAAAATTCGCATCGTTTGTCGAAACGT
TCTCTGATGGGAACGATCCTCTGCTCGTCTCTCACAATGCGTCTTTCGAT
GTATCCTTTCTGAAAGCAGAGCTTGCTCGAGAGTGTATGAGCTTGCCGTC
AAACTGGCGCTTTGTCTGCTCCTTGCAGCTCGCACGCACTCTGAACATTG
AATCCAATTCTCACTCACAGTCTGATCTGGCCGACCATTATGGAGTTGTG
CCGGATCGCGAGCATCATGCAGCGACAGATGTAATGACCCTCCGAGACAT
TCTGATCGCCATGAGCGAGGAGTACTGTATCTTACCCTTGCTGTACCGTG
ATGCCCAGAAGCCCTCGTTCTTTGATAGGGTTCCCGAGTTACAAAGTGAT
GAAAAGCGGGAGGCCCGCTTCTTTGTGACTTTGACCGGTCGAAAGTATCA
TGCAAAAGGTTGTAGATGGCTTTCCCGCTCTTGTATACCAAAGACTACAC
CTCCCCCTGGTTTGGAGCCCTGTTCAACGTGCCGGCCACAACTTGTCTCT
CAAGAAAACCGTTCATCATCGCCCATATTCAGAGAAACATCTCGTACTGG
TATAGTGTCAACTACAAGCTCTTACAGGCAGGAAAGTGGCAAGTATTTCA
TTACAAAAACAGGACAAAAGTATCATGTAGACGGTTGCAAATGGTTGAGC
AGATCCAAAATACCTAAGGATTGCCCACCACAAGGTTATCGTCCTTGTCG
CGTCTGTCTTCCTGGTGGGGCACCTTTGGGAGCTGGCTCTTCATTTGTGG
AAAGGGAAGTCGAAGAGCCCTGCTCGTCAGAGGTGTATGTTGCTCCTAAG
GCATTCTACATCACAAACACAGGTGTGAAATACCATGTCGACGGGTGTAA
GTGGCTGAGCCGATCGAAGATTCCCAGAGATTCTCCACCTGTTGGATATG
ACCCTTGTCGTGTATGTTTACCGAACGGTGTTCCAAGGGAAAGCACACGT
TCAGTTCTCGCATCCCAACGAAATTCATCTGGCAGCAGTTCGTTCTCTCG
TGCACCACCAAACACGGGAACATATTACATCACAACTACAGGTACAAGAT
ATCACGTTGATGGCTGCAAGTGGCTTAGTCGGTCGAAGATCCCTAGAGAT
GCTCCACCGTCAGGTTATGCCCCTTGTCGGGTCTGTTTACCGAACGGAAC
AACTCCATTAGGAACAGCCGAGGAAAGTCAAGACCGTGTTCGTGAATCAT
CACTGCATTCAAAAAGTGAAAACGGCCGTTGTAGAAACGAGGATTCTCAG
GACTCGGGATCTGTGCCAAGCAACTCAAGACAAGCGAGATTCTACACAAC
GAGAACGGGACGAAAATTCCACATCGGAACATGCAAGCATCTCCGCAATT
CGAAAACTGCAACAGACTCGCCGCCTCCTGAATTCGAAGCCTGTGCAGTT
TGTCTTCCGTACGGTGTTGACCCCGTCCATTTGGCTCATGGTGAAGGGAA
GGCGGTAGAAGAAAACATTACCAAGCTCGCTAAGTTCCCCTCGAGCTGCG
AAACGACCGAAATCAGGACACCCGAACGTTCGAAGAAGCCCATTCCAGGA
AACAAGCTGGGCGAAGAGAAAGAATCAAAGGGCTCACCTCGCTCTGCTTT
CGATTTCGCAGTCACGTTCTAG