Ggra3220.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3220.t1
Unique NameGgra3220.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Homology
BLAST of Ggra3220.t1 vs. uniprot
Match: A0A2V3IYP2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYP2_9FLOR)

HSP 1 Score: 543 bits (1398), Expect = 2.570e-192
Identity = 254/351 (72.36%), Postives = 300/351 (85.47%), Query Frame = 0
Query:    6 RYPSVFILVVG-ILVFGNFARVESACSKYIPIYQILGAPNKVQTFDDTDGFREIKAARYDVNNCKENSQNPTGNQFAGNYTLIGHEALLSDDECLIKQEGGKLMYHSMQAVVITANGWTFEPTRIDLDDIDAEPGVESGDGWKESMAVFGLRGAEIVRPNLKLYNGTLLVMQNYTVDASAMTQMGLEANNSQIVPGGHYGSNQMVNCPFGRDNPDSAQCRMTASFSRPIDTLVIMYAVLQKSKTETRAASFISELIMKCGCRCSQRDVGSRKLFAPIPGVEGECVEKESSSPRTMCDVLGSTWCKKEDIVGFKPTGDPLPNGNCPCEENVVYRVTVDSPFKPRNDFILNTV 355
            R   VF +++G +LV   F   ESACSKY PI+QIL +PNKVQTFDDTDGFREIKA +YDVNNCKENSQNPTG QFAGNYTLIGHE+LL+DDECL+KQ  GK+ Y+SMQA+VI+ANGWTF+P RIDLDDIDAEPGV S DGWKESMA+FG+RG++IVRP+LK YN +LLV QNYTV  S + Q+GL  N   +VPGGHY S++MVNCPFG+DN +S +CRMTASF+ PIDTLV+MYAVLQKSKTETRAASFISE+I+ CGCRCSQ DVGSRKL APIPGV+GECV+KES++PRT+CDVLGSTWC K +I  +  +G+ LPNGNCPC +   +RV+VDSPF+PRNDFILNTV
Sbjct:    7 RSSEVFFVIIGLVLVSDLFLVAESACSKYFPIHQILDSPNKVQTFDDTDGFREIKAVQYDVNNCKENSQNPTGKQFAGNYTLIGHESLLTDDECLVKQNDGKMYYNSMQAIVISANGWTFQPIRIDLDDIDAEPGVLSSDGWKESMAIFGMRGSDIVRPSLKFYNRSLLVAQNYTVIQSNLQQLGLSLNGEHMVPGGHYASDEMVNCPFGKDNKESERCRMTASFNLPIDTLVVMYAVLQKSKTETRAASFISEVIVNCGCRCSQIDVGSRKLLAPIPGVDGECVQKESTAPRTVCDVLGSTWCTKAEIASYTASGETLPNGNCPCTKGKGHRVSVDSPFQPRNDFILNTV 357          
BLAST of Ggra3220.t1 vs. uniprot
Match: A0A1X6PAP5 (Uncharacterized protein n=5 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAP5_PORUM)

HSP 1 Score: 179 bits (455), Expect = 6.490e-50
Identity = 100/312 (32.05%), Postives = 169/312 (54.17%), Query Frame = 0
Query:   15 VGILVFGNFARVESACSKYIPIYQILGAPNKVQTFDDTDGFREIKAARYDVNNCKENSQNPTGNQFA---GNYTLIGHEALLSDDECLIK--QEGGKLMYHSMQAVVITANGWTFEPTRIDLDDIDAEPGVESGDGWKESMAVFGLRGAEIVRPNLKLYNGTLLVMQNYTVDASAMTQMGLEANNSQIVPGGHYGS-NQMVNCPFGRDNPDSAQCRMTASFSRPIDTLVIMYAVLQKSKTETRAASFISELIMKCGCRCSQRDVGSRKLFAPIPGVEGECVEKESSSPRTMCDVLGSTWCKKEDIVGFKPTG 320
            V +L     A   SAC +Y+PI++IL +   V  F D    R++KA +  V  C      P+G  +     NYT++ HE+    D C+    ++G    Y   QA+VI ANG+ F    + L+DIDA+P  +   GW+E+M+   +    +VRP++    G+L+ +Q + V  +++ ++G  +++  ++ G  Y S  +  NCPF  D     QC+   S+  P+D L+I+YA+ QKS  +  AA+F SE+ + CGC+C+++  G+ ++  P+ G  G C    S SP   CD +G+ WC+  +   ++ TG
Sbjct:   20 VTLLAAATAADARSAC-EYVPIHRILASAGGVYKFADG---RQLKARKVSVGGCSTMPALPSGIAYPDTNSNYTVMSHES----DACITGTGRDGSTPTYAGFQAIVIEANGFKFSADLV-LEDIDAQPVADPTQGWRETMSSLAMADGAVVRPSMTTKPGSLVAVQPFRVPRASLQEVGFPSSDDLLISGAAYSSWTETKNCPFMNDT--MGQCKAFVSYPTPVDRLLIIYAITQKSANDPNAAAFFSEVTLACGCQCAEKP-GASEMTVPVHGSAGTCKTVPSKSPAYRCDFMGNFWCETAEKTRWEMTG 319          
BLAST of Ggra3220.t1 vs. uniprot
Match: A0A1X6NYR9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYR9_PORUM)

HSP 1 Score: 177 bits (449), Expect = 8.400e-49
Identity = 102/302 (33.77%), Postives = 164/302 (54.30%), Query Frame = 0
Query:   24 ARVESACSKYIPIYQILGAPNKVQTFDDTDGFREIKAARYDVNNCKENSQNPTGNQFA---GNYTLIGHEALLSDDECLIK--QEGGKLMYHSMQAVVITANGWTFEPTRIDLDDIDAEPGVESGDGWKESMAVFGLRGAEIVRPNLKLYNGTLLVMQNYTVDASAMTQMGLEANNSQIVPGGHYGS-NQMVNCPFGRDNPDSAQCRMTASFSRPIDTLVIMYAVLQKSKTETRAASFISELIMKCGCRCSQRDVGSRKLFAPIPGVEGECVEKESSSPRTMCDVLGSTWCKKEDIVGFKPT 319
            A    AC KY+PI++IL +   V TF D    R++KA R DV  C       +G  +     NYT++ HE+    D C+    ++G    Y   QA+VI +NG+ F    + L+DIDA+P  +   GW+E+M+   +    +VRP++    G+ + +Q + V  +++ ++G  +++  ++ G  Y S  +  NCPF  D   + QC+   S+  PID L+I+YA+ QKS  +  AA+F SE+ + CGC+C  +D    K+  PI G  G+C  K ++ P   CD LGS WC+ E    ++ T
Sbjct:   50 ADARQAC-KYVPIHRILSSAGGVFTFPDG---RQLKATRLDVGGCTTMPGLQSGIAYPDTNSNYTVMSHES----DACITGTGRDGSTPTYAGFQAIVIESNGFKFSADLV-LEDIDAQPVDDPTQGWRETMSSLAMADGAVVRPSMTTKPGSPVAVQPFRVPRASLQEVGFPSSDDLLISGAAYNSWTETKNCPFMND--PTGQCKAFVSYPDPIDRLLIIYAITQKSANDPNAAAFFSEVTLACGCQCEGKD-DVAKITIPIDGAPGKCRTKTTTRPTFGCDFLGSRWCETEASTAWRMT 339          
The following BLAST results are available for this feature:
BLAST of Ggra3220.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IYP22.570e-19272.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6PAP56.490e-5032.05Uncharacterized protein n=5 Tax=Porphyra umbilical... [more]
A0A1X6NYR98.400e-4933.77Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..355
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..28
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:106779..107846 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3220.t1Ggra3220.t1Gracilaria gracilis GNS1m malemRNAtig00000922_pilon 106779..107846 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3220.t1 ID=Ggra3220.t1|Name=Ggra3220.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MSSLNRYPSVFILVVGILVFGNFARVESACSKYIPIYQILGAPNKVQTFD
DTDGFREIKAARYDVNNCKENSQNPTGNQFAGNYTLIGHEALLSDDECLI
KQEGGKLMYHSMQAVVITANGWTFEPTRIDLDDIDAEPGVESGDGWKESM
AVFGLRGAEIVRPNLKLYNGTLLVMQNYTVDASAMTQMGLEANNSQIVPG
GHYGSNQMVNCPFGRDNPDSAQCRMTASFSRPIDTLVIMYAVLQKSKTET
RAASFISELIMKCGCRCSQRDVGSRKLFAPIPGVEGECVEKESSSPRTMC
DVLGSTWCKKEDIVGFKPTGDPLPNGNCPCEENVVYRVTVDSPFKPRNDF
ILNTV*
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