Ggra3220.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3220.t1
Unique NameGgra3220.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:106779..107846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3220Ggra3220Gracilaria gracilis GNS1m malegenetig00000922_pilon 106779..107846 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3220.t1.stop1Ggra3220.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 106779..106781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3220.t1.CDS1Ggra3220.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 106779..107846 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3220.t1.exon1Ggra3220.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 106779..107846 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3220.t1.start1Ggra3220.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 107844..107846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3220.t1Ggra3220.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 106779..107846 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3220.t1 ID=Ggra3220.t1|Name=Ggra3220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MSSLNRYPSVFILVVGILVFGNFARVESACSKYIPIYQILGAPNKVQTFD
DTDGFREIKAARYDVNNCKENSQNPTGNQFAGNYTLIGHEALLSDDECLI
KQEGGKLMYHSMQAVVITANGWTFEPTRIDLDDIDAEPGVESGDGWKESM
AVFGLRGAEIVRPNLKLYNGTLLVMQNYTVDASAMTQMGLEANNSQIVPG
GHYGSNQMVNCPFGRDNPDSAQCRMTASFSRPIDTLVIMYAVLQKSKTET
RAASFISELIMKCGCRCSQRDVGSRKLFAPIPGVEGECVEKESSSPRTMC
DVLGSTWCKKEDIVGFKPTGDPLPNGNCPCEENVVYRVTVDSPFKPRNDF
ILNTV*
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spliced messenger RNA

>Ggra3220.t1 ID=Ggra3220.t1|Name=Ggra3220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000922_pilon:106779..107846- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCACTAAACAGATACCCTAGCGTGTTCATTCTCGTCGTTGGCAT
TCTTGTCTTTGGAAACTTCGCAAGAGTGGAGTCAGCATGCTCAAAGTATA
TTCCGATTTACCAGATTCTGGGCGCTCCCAATAAGGTTCAGACGTTTGAC
GATACAGATGGGTTCCGAGAGATCAAAGCCGCTCGATATGATGTGAACAA
CTGCAAAGAGAACTCGCAGAACCCGACTGGGAATCAGTTTGCTGGAAATT
ATACTCTTATTGGTCACGAAGCATTGCTCTCGGATGATGAATGCTTGATC
AAGCAGGAAGGAGGGAAGCTGATGTATCACTCAATGCAAGCCGTTGTAAT
TACTGCGAATGGATGGACCTTCGAACCAACAAGAATTGACCTAGATGATA
TTGATGCTGAACCGGGAGTTGAATCTGGTGACGGATGGAAGGAAAGCATG
GCAGTTTTCGGTTTGAGAGGAGCAGAGATTGTGAGACCGAACCTGAAGTT
ATACAATGGAACCCTGCTCGTCATGCAGAACTACACGGTCGATGCGTCAG
CTATGACTCAAATGGGTCTTGAGGCAAACAATTCTCAAATAGTGCCCGGT
GGTCACTACGGATCCAACCAGATGGTTAACTGTCCGTTTGGTCGCGACAA
CCCAGACTCGGCACAGTGTCGCATGACTGCATCGTTCTCACGACCAATCG
ATACACTCGTCATAATGTATGCTGTTTTGCAGAAGAGCAAAACGGAAACC
CGAGCTGCGTCTTTCATCTCGGAACTTATCATGAAATGTGGATGTCGCTG
TTCCCAAAGGGATGTGGGAAGCAGAAAACTTTTTGCCCCAATCCCAGGCG
TTGAAGGGGAATGTGTCGAGAAAGAATCCTCTTCGCCCCGCACTATGTGT
GATGTGTTAGGTTCAACGTGGTGCAAGAAGGAAGATATTGTAGGATTCAA
ACCGACGGGAGATCCCTTGCCGAACGGAAACTGTCCATGTGAGGAAAACG
TTGTGTATCGAGTAACCGTAGATTCGCCATTCAAGCCGAGAAATGACTTC
ATTCTTAACACAGTTTAG
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protein sequence of Ggra3220.t1

>Ggra3220.t1 ID=Ggra3220.t1|Name=Ggra3220.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MSSLNRYPSVFILVVGILVFGNFARVESACSKYIPIYQILGAPNKVQTFD
DTDGFREIKAARYDVNNCKENSQNPTGNQFAGNYTLIGHEALLSDDECLI
KQEGGKLMYHSMQAVVITANGWTFEPTRIDLDDIDAEPGVESGDGWKESM
AVFGLRGAEIVRPNLKLYNGTLLVMQNYTVDASAMTQMGLEANNSQIVPG
GHYGSNQMVNCPFGRDNPDSAQCRMTASFSRPIDTLVIMYAVLQKSKTET
RAASFISELIMKCGCRCSQRDVGSRKLFAPIPGVEGECVEKESSSPRTMC
DVLGSTWCKKEDIVGFKPTGDPLPNGNCPCEENVVYRVTVDSPFKPRNDF
ILNTV*
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mRNA from alignment at tig00000922_pilon:106779..107846-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3220.t1 ID=Ggra3220.t1|Name=Ggra3220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000922_pilon:106779..107846- (Gracilaria gracilis GNS1m male)
ATGTCTTCACTAAACAGATACCCTAGCGTGTTCATTCTCGTCGTTGGCAT
TCTTGTCTTTGGAAACTTCGCAAGAGTGGAGTCAGCATGCTCAAAGTATA
TTCCGATTTACCAGATTCTGGGCGCTCCCAATAAGGTTCAGACGTTTGAC
GATACAGATGGGTTCCGAGAGATCAAAGCCGCTCGATATGATGTGAACAA
CTGCAAAGAGAACTCGCAGAACCCGACTGGGAATCAGTTTGCTGGAAATT
ATACTCTTATTGGTCACGAAGCATTGCTCTCGGATGATGAATGCTTGATC
AAGCAGGAAGGAGGGAAGCTGATGTATCACTCAATGCAAGCCGTTGTAAT
TACTGCGAATGGATGGACCTTCGAACCAACAAGAATTGACCTAGATGATA
TTGATGCTGAACCGGGAGTTGAATCTGGTGACGGATGGAAGGAAAGCATG
GCAGTTTTCGGTTTGAGAGGAGCAGAGATTGTGAGACCGAACCTGAAGTT
ATACAATGGAACCCTGCTCGTCATGCAGAACTACACGGTCGATGCGTCAG
CTATGACTCAAATGGGTCTTGAGGCAAACAATTCTCAAATAGTGCCCGGT
GGTCACTACGGATCCAACCAGATGGTTAACTGTCCGTTTGGTCGCGACAA
CCCAGACTCGGCACAGTGTCGCATGACTGCATCGTTCTCACGACCAATCG
ATACACTCGTCATAATGTATGCTGTTTTGCAGAAGAGCAAAACGGAAACC
CGAGCTGCGTCTTTCATCTCGGAACTTATCATGAAATGTGGATGTCGCTG
TTCCCAAAGGGATGTGGGAAGCAGAAAACTTTTTGCCCCAATCCCAGGCG
TTGAAGGGGAATGTGTCGAGAAAGAATCCTCTTCGCCCCGCACTATGTGT
GATGTGTTAGGTTCAACGTGGTGCAAGAAGGAAGATATTGTAGGATTCAA
ACCGACGGGAGATCCCTTGCCGAACGGAAACTGTCCATGTGAGGAAAACG
TTGTGTATCGAGTAACCGTAGATTCGCCATTCAAGCCGAGAAATGACTTC
ATTCTTAACACAGTTTAG
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Coding sequence (CDS) from alignment at tig00000922_pilon:106779..107846-

>Ggra3220.t1 ID=Ggra3220.t1|Name=Ggra3220.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000922_pilon:106779..107846- (Gracilaria gracilis GNS1m male)
ATGTCTTCACTAAACAGATACCCTAGCGTGTTCATTCTCGTCGTTGGCAT
TCTTGTCTTTGGAAACTTCGCAAGAGTGGAGTCAGCATGCTCAAAGTATA
TTCCGATTTACCAGATTCTGGGCGCTCCCAATAAGGTTCAGACGTTTGAC
GATACAGATGGGTTCCGAGAGATCAAAGCCGCTCGATATGATGTGAACAA
CTGCAAAGAGAACTCGCAGAACCCGACTGGGAATCAGTTTGCTGGAAATT
ATACTCTTATTGGTCACGAAGCATTGCTCTCGGATGATGAATGCTTGATC
AAGCAGGAAGGAGGGAAGCTGATGTATCACTCAATGCAAGCCGTTGTAAT
TACTGCGAATGGATGGACCTTCGAACCAACAAGAATTGACCTAGATGATA
TTGATGCTGAACCGGGAGTTGAATCTGGTGACGGATGGAAGGAAAGCATG
GCAGTTTTCGGTTTGAGAGGAGCAGAGATTGTGAGACCGAACCTGAAGTT
ATACAATGGAACCCTGCTCGTCATGCAGAACTACACGGTCGATGCGTCAG
CTATGACTCAAATGGGTCTTGAGGCAAACAATTCTCAAATAGTGCCCGGT
GGTCACTACGGATCCAACCAGATGGTTAACTGTCCGTTTGGTCGCGACAA
CCCAGACTCGGCACAGTGTCGCATGACTGCATCGTTCTCACGACCAATCG
ATACACTCGTCATAATGTATGCTGTTTTGCAGAAGAGCAAAACGGAAACC
CGAGCTGCGTCTTTCATCTCGGAACTTATCATGAAATGTGGATGTCGCTG
TTCCCAAAGGGATGTGGGAAGCAGAAAACTTTTTGCCCCAATCCCAGGCG
TTGAAGGGGAATGTGTCGAGAAAGAATCCTCTTCGCCCCGCACTATGTGT
GATGTGTTAGGTTCAACGTGGTGCAAGAAGGAAGATATTGTAGGATTCAA
ACCGACGGGAGATCCCTTGCCGAACGGAAACTGTCCATGTGAGGAAAACG
TTGTGTATCGAGTAACCGTAGATTCGCCATTCAAGCCGAGAAATGACTTC
ATTCTTAACACAGTTTAG
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