Ggra1465.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1465.t1
Unique NameGgra1465.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length101
Homology
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A2V3J0K9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0K9_9FLOR)

HSP 1 Score: 164 bits (416), Expect = 5.020e-51
Identity = 83/100 (83.00%), Postives = 93/100 (93.00%), Query Frame = 0
Query:    1 MYAFVGATGLATARPGSFTTSRCTVSARPVARRPAAPARMSLESSLATLPPLPLAEGMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGRGEE 100
            MYAFVG TGL  ARPG+FT +RCTVSARPVARR  APA+MS+E++LATLP LP+AEGMAVTFPAYLAVFLGTLIPCAFL++LYIQAESRKAGER+GRGEE
Sbjct:    1 MYAFVGTTGLIAARPGAFTVNRCTVSARPVARRATAPAKMSIENTLATLPSLPVAEGMAVTFPAYLAVFLGTLIPCAFLIVLYIQAESRKAGERIGRGEE 100          
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A7S1XCP1 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XCP1_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 4.100e-16
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = 0
Query:    1 MYAFVGATGLATARPGSFTTSRCTVSARPVARRPAAPARMS---LESSLATLPPLPLAEG--MAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGRGE 99
            M AFVG+ G       SF T    V      +  AAP R +      S+  L  + +AEG  MAVTFPAYLAVFLGTL P AFL+IL+IQ+E+RKAGE  GRGE
Sbjct:   23 MTAFVGSCG-------SFVTGTRAVQVSASRKTVAAPRRATRVVTRMSVGELANVMIAEGGGMAVTFPAYLAVFLGTLFPVAFLIILFIQSEARKAGEEAGRGE 119          
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A4D9CNG8 (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A4D9CNG8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.220e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0
Query:   58 MAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGRGE 99
            + VTF AYLAV LGT +P AFL+ILYIQ+ESRKAGE  GRGE
Sbjct:   82 LEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGRGE 123          
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A5J4YYD7 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYD7_PORPP)

HSP 1 Score: 59.3 bits (142), Expect = 2.270e-9
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
Query:   57 GMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAG 92
            GM+V+FPAYLAV LGT +P AFLVILYIQ+E+RKAG
Sbjct:   59 GMSVSFPAYLAVLLGTFVPVAFLVILYIQSEARKAG 94          
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A835ZJC8 (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJC8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.250e-9
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0
Query:   58 MAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGR 97
            + V F AYLAV LGT +P AFL++LYIQ+ESRKAGER GR
Sbjct:   75 LEVQFGAYLAVLLGTFVPVAFLIVLYIQSESRKAGERSGR 114          
BLAST of Ggra1465.t1 vs. uniprot
Match: M1V7K1 (Photosystem II protein M n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7K1_CYAM1)

HSP 1 Score: 58.2 bits (139), Expect = 1.790e-8
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 0
Query:   40 MSLESSLATLPPLPLA---EGMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERV--GRGEE 100
            +SL +++  LP +  A    GM V F AYLAVFLGTLIP AFL+ILYIQ+E+RKA      G G E
Sbjct:   77 VSLAAAMWALPSMGYAAEESGMTVQFGAYLAVFLGTLIPVAFLIILYIQSETRKAAMEAVSGSGSE 142          
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A7J7IRK1 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRK1_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 2.130e-8
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 0
Query:   34 PAAPARMSLESSLATLPPLPLAE---GMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAG-ERVGRGEE 100
            PAAP    L ++L+ LP L  A     M V F AYLAVFLGTLIP AFL+ILYIQ+E+RKA  E V  G E
Sbjct:   34 PAAP----LFAALSGLPSLANAGEDGAMTVQFGAYLAVFLGTLIPVAFLIILYIQSETRKAAMEAVSGGSE 100          
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A6V1AP72 (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6V1AP72_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.730e-7
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 0
Query:   35 AAPARMSLESSLATLPPLPLAEGMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGRGEE 100
            AAPA  +L+S +  LP   +A  + V F AYLAV  GT +PC FLV LYIQ ESRKAG+  G+  E
Sbjct:   39 AAPA-FALDSIVEYLPTNTVA--LEVQFGAYLAVLFGTFLPCLFLVNLYIQTESRKAGKAGGQDSE 101          
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A6U2FI17 (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A6U2FI17_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.960e-7
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0
Query:   18 FTTSRCTVSARPVARRPAAPARMSLESSLATLPPLPLAEGMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGRGEE 100
            F   +  ++A P A   AAPA  +L+S +  +P   LA  + V F AYLAV LGT +PC FL+ L+IQ ESR+AG   G+  E
Sbjct:   32 FDMKKAAIAAIPAAGV-AAPA-FALDSIVEAMPTNTLA--LEVQFGAYLAVLLGTFLPCLFLINLFIQTESRRAGREGGQDAE 110          
BLAST of Ggra1465.t1 vs. uniprot
Match: A0A1Z5J666 (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J666_FISSO)

HSP 1 Score: 52.8 bits (125), Expect = 8.270e-7
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0
Query:   21 SRCTVSARPVARRPAAPARMSLESSLATLPPLPLAEGMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVG 96
            ++   +A PVA   +APA  +L+S +A +P   +A  + V F AY+AV LGTL+PC FL+ L+IQ ESRKAG + G
Sbjct:   27 AKAATAAVPVAAL-SAPA-FALDSIVANMPTNTVA--LEVQFGAYMAVALGTLLPCLFLINLFIQTESRKAGRQGG 98          
The following BLAST results are available for this feature:
BLAST of Ggra1465.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A2V3J0K95.020e-5183.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1XCP14.100e-1650.96Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A4D9CNG84.220e-1173.81Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A5J4YYD72.270e-977.78Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A835ZJC86.250e-970.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
M1V7K11.790e-854.55Photosystem II protein M n=1 Tax=Cyanidioschyzon m... [more]
A0A7J7IRK12.130e-857.75Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A6V1AP725.730e-753.03Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A6U2FI176.960e-744.58Hypothetical protein n=2 Tax=Odontellaceae TaxID=2... [more]
A0A1Z5J6668.270e-747.37Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007826Photosystem II PsbMPFAMPF05151PsbMcoord: 58..88
e-value: 2.0E-6
score: 27.5
IPR007826Photosystem II PsbMTIGRFAMTIGR03038TIGR03038coord: 58..90
e-value: 1.8E-12
score: 44.8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..61
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
IPR037269Photosystem II PsbM superfamilySUPERFAMILY161033Photosystem II reaction center protein M, PsbMcoord: 58..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:161558..162140 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1465.t1Ggra1465.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 161558..162140 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1465.t1 ID=Ggra1465.t1|Name=Ggra1465.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=101bp
MYAFVGATGLATARPGSFTTSRCTVSARPVARRPAAPARMSLESSLATLP
PLPLAEGMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGRGEE
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007826PSII_PsbM
IPR037269PSII_PsbM_sf