Ggra1465.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1465.t1
Unique NameGgra1465.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length101
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:161558..162140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr55057
Preferred namePsbM
Max annot lvl2836|Bacillariophyta
KEGG koko:K02714
KEGG Pathwayko00195,ko01100,map00195,map01100
Evalue8.19e-08
EggNOG OGs2E8DZ@1|root,2SEWM@2759|Eukaryota,2XD80@2836|Bacillariophyta
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1465Ggra1465Gracilaria gracilis GNS1m malegenetig00000844_pilon 161558..162140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1465.t1Ggra1465.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 161558..162140 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1465.t1.start1Ggra1465.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 161558..161560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1465.t1.CDS1Ggra1465.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 161558..161614 +
Ggra1465.t1.CDS2Ggra1465.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 161895..162140 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1465.t1.exon1Ggra1465.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 161558..161614 +
Ggra1465.t1.exon2Ggra1465.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 161895..162140 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1465.t1.intron1Ggra1465.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 161615..161894 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1465.t1.stop1Ggra1465.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 162138..162140 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1465.t1 ID=Ggra1465.t1|Name=Ggra1465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=101bp
MYAFVGATGLATARPGSFTTSRCTVSARPVARRPAAPARMSLESSLATLP
PLPLAEGMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGRGEE
*
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spliced messenger RNA

>Ggra1465.t1 ID=Ggra1465.t1|Name=Ggra1465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp|location=Sequence derived from alignment at tig00000844_pilon:161558..162140+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCTTTTGTTGGCGCCACCGGTCTTGCCACTGCCCGCCCAGGCTC
GTTTACCACCTCTCGATGCACTGTCTCCGCACGGCCTGTCGCGCGCCGCC
CCGCCGCGCCCGCCAGGATGAGCCTTGAGAGCTCTCTGGCCACCTTGCCC
CCTCTGCCGCTCGCTGAAGGTATGGCTGTCACATTCCCAGCCTACCTTGC
CGTCTTCCTCGGAACTTTGATCCCTTGCGCGTTTTTGGTTATCTTGTACA
TCCAAGCTGAAAGTCGCAAGGCGGGTGAGAGGGTTGGACGAGGCGAGGAA
TAA
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protein sequence of Ggra1465.t1

>Ggra1465.t1 ID=Ggra1465.t1|Name=Ggra1465.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=101bp
MYAFVGATGLATARPGSFTTSRCTVSARPVARRPAAPARMSLESSLATLP
PLPLAEGMAVTFPAYLAVFLGTLIPCAFLVILYIQAESRKAGERVGRGEE
*
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mRNA from alignment at tig00000844_pilon:161558..162140+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1465.t1 ID=Ggra1465.t1|Name=Ggra1465.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=583bp|location=Sequence derived from alignment at tig00000844_pilon:161558..162140+ (Gracilaria gracilis GNS1m male)
ATGTACGCTTTTGTTGGCGCCACCGGTCTTGCCACTGCCCGCCCAGGCTC
GTTTACCGTACGTTGAGTCCTGCCTTTCTGCTTCTTCACGCGCTTGGAGT
GGTCCAAGCTTCGATGCATTTGTACTGTTTAGACTTCTGCTGGCGAGCGT
CGCAACAAGCGCGCCAAAATACATAGTGCAAATGACGGGACCACGTGTTT
CTTCAGCCGAAAACGAAACACTTTCATCTACGCAAGTTTTACTTGAAACT
CAACTTCGAATGCTAACCTTTCTAAACGTCGACCTCTGCAACCCTACAAA
AACTCTGCTTTCAACGTATACAACCGCCGCGCCACAGACCTCTCGATGCA
CTGTCTCCGCACGGCCTGTCGCGCGCCGCCCCGCCGCGCCCGCCAGGATG
AGCCTTGAGAGCTCTCTGGCCACCTTGCCCCCTCTGCCGCTCGCTGAAGG
TATGGCTGTCACATTCCCAGCCTACCTTGCCGTCTTCCTCGGAACTTTGA
TCCCTTGCGCGTTTTTGGTTATCTTGTACATCCAAGCTGAAAGTCGCAAG
GCGGGTGAGAGGGTTGGACGAGGCGAGGAATAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:161558..162140+

>Ggra1465.t1 ID=Ggra1465.t1|Name=Ggra1465.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=303bp|location=Sequence derived from alignment at tig00000844_pilon:161558..162140+ (Gracilaria gracilis GNS1m male)
ATGTACGCTTTTGTTGGCGCCACCGGTCTTGCCACTGCCCGCCCAGGCTC
GTTTACCACCTCTCGATGCACTGTCTCCGCACGGCCTGTCGCGCGCCGCC
CCGCCGCGCCCGCCAGGATGAGCCTTGAGAGCTCTCTGGCCACCTTGCCC
CCTCTGCCGCTCGCTGAAGGTATGGCTGTCACATTCCCAGCCTACCTTGC
CGTCTTCCTCGGAACTTTGATCCCTTGCGCGTTTTTGGTTATCTTGTACA
TCCAAGCTGAAAGTCGCAAGGCGGGTGAGAGGGTTGGACGAGGCGAGGAA
TAA
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