Ggra1107.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1107.t1
Unique NameGgra1107.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Homology
[Close]
BLAST of Ggra1107.t1 vs. uniprot
Match: R7QR26 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR26_CHOCR)

HSP 1 Score: 198 bits (503), Expect = 1.650e-59
Identity = 110/227 (48.46%), Postives = 144/227 (63.44%), Query Frame = 0 
Query:   20 RVSLWREGGAPRVLTGAAAAFAGGASYMYFARSGTAASPVAPALRAGAACALLAAPFFAVREVVAASMRVDGPVASAVSGGVAGYFGALFTLGPYWKAVSRSAMLTGVGCGVVDALVSALDWKRKLYLLRRHDQAVAXXXXXXADKMHGAVVDDAHAPLFSWPHWLPVLTRIDHEYEELLNRQRATVLALQREQARIALLLRALESVKAGNRVTDVELAEATSSSSL 246
            R + WREGG  RV  G    FAGGA Y     +   A P A ALR G  C +  APFFA REV+ A + +DGP+AS ++GG+AGY G+LF  GP+WK VS SAM  G+GCG  D +VS LDW+RK+Y++ RHD AV         K  GA V  +++  F  P WLP L  ID+EY++LL RQ ATV+AL++EQARIA+LL AL+ VK+   + + E A     +S+
Sbjct:   10 RSAWWREGGLRRVSLGGLTGFAGGALY-----ATARALPPAYALRGGLVCGVFTAPFFAFREVLTARLHMDGPMASTIAGGIAGYVGSLFIAGPHWKTVSHSAMAVGIGCGFADIVVSRLDWQRKVYIVNRHDAAVKAAAEQVESKESGASVQRSNS-FFKLPSWLPGLNDIDNEYQDLLRRQEATVVALEKEQARIAVLLEALDRVKSATEIINPEKARPDLPASV 230
The following BLAST results are available for this feature:
BLAST of Ggra1107.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QR261.650e-5948.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..264
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 142..272
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 116..120
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..90
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..115
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..141
NoneNo IPR availableTMHMMTMhelixcoord: 27..49
NoneNo IPR availableTMHMMTMhelixcoord: 56..78
NoneNo IPR availableTMHMMTMhelixcoord: 93..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:66466..67284 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1107.t1Ggra1107.t1Gracilaria gracilis GNS1m malemRNAtig00000945_pilon 66466..67284 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1107.t1 ID=Ggra1107.t1|Name=Ggra1107.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
MSPPPPPPPSPPPAPPPRERVSLWREGGAPRVLTGAAAAFAGGASYMYFA
RSGTAASPVAPALRAGAACALLAAPFFAVREVVAASMRVDGPVASAVSGG
VAGYFGALFTLGPYWKAVSRSAMLTGVGCGVVDALVSALDWKRKLYLLRR
HDQAVAAAAAAAADKMHGAVVDDAHAPLFSWPHWLPVLTRIDHEYEELLN
RQRATVLALQREQARIALLLRALESVKAGNRVTDVELAEATSSSSLSSSS
LSSSSLSSPSPSLCDKRPSPTP*
back to top