Ggra1107.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1107.t1
Unique NameGgra1107.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:66466..67284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1107Ggra1107Gracilaria gracilis GNS1m malegenetig00000945_pilon 66466..67284 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1107.t1.stop1Ggra1107.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 66466..66468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1107.t1.CDS1Ggra1107.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 66466..67284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1107.t1.exon1Ggra1107.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 66466..67284 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1107.t1.start1Ggra1107.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 67282..67284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1107.t1Ggra1107.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 66466..67284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1107.t1 ID=Ggra1107.t1|Name=Ggra1107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
MSPPPPPPPSPPPAPPPRERVSLWREGGAPRVLTGAAAAFAGGASYMYFA
RSGTAASPVAPALRAGAACALLAAPFFAVREVVAASMRVDGPVASAVSGG
VAGYFGALFTLGPYWKAVSRSAMLTGVGCGVVDALVSALDWKRKLYLLRR
HDQAVAAAAAAAADKMHGAVVDDAHAPLFSWPHWLPVLTRIDHEYEELLN
RQRATVLALQREQARIALLLRALESVKAGNRVTDVELAEATSSSSLSSSS
LSSSSLSSPSPSLCDKRPSPTP*
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spliced messenger RNA

>Ggra1107.t1 ID=Ggra1107.t1|Name=Ggra1107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000945_pilon:66466..67284- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCTCCGCCTCCGCCTCCGCCTTCGCCGCCGCCGGCGCCGCCGCC
GCGCGAGCGCGTGTCGCTGTGGCGTGAGGGCGGCGCGCCGCGCGTGCTCA
CCGGCGCGGCGGCCGCGTTTGCGGGCGGCGCGTCGTACATGTACTTTGCG
CGCAGCGGCACGGCGGCGTCGCCGGTGGCGCCCGCGCTGCGCGCCGGCGC
GGCGTGCGCGCTGCTGGCCGCGCCGTTCTTCGCCGTGCGCGAGGTGGTGG
CCGCGTCCATGCGCGTGGACGGCCCGGTGGCGTCCGCCGTGTCCGGCGGC
GTGGCCGGCTACTTTGGCGCCCTCTTCACGCTGGGCCCGTACTGGAAGGC
CGTGTCGCGCTCCGCCATGCTCACCGGCGTGGGCTGCGGCGTGGTGGACG
CGCTGGTCAGCGCGCTGGACTGGAAGCGCAAGCTGTACCTGCTGCGTCGC
CACGACCAAGCCGTGGCCGCCGCCGCCGCCGCCGCCGCCGATAAGATGCA
CGGCGCCGTCGTCGACGACGCGCACGCGCCGCTGTTCAGCTGGCCGCACT
GGCTGCCCGTGCTCACGCGCATCGACCACGAGTACGAGGAGCTGCTGAAC
AGGCAGCGCGCCACCGTGCTGGCGCTGCAGCGCGAGCAGGCGCGCATCGC
GCTGCTGCTGCGCGCGCTGGAGTCGGTCAAGGCCGGCAATCGCGTCACGG
ACGTGGAGCTGGCCGAGGCCACGTCGTCGTCGTCGCTGTCGTCGTCGTCG
CTGTCGTCGTCGTCGCTGTCGTCGCCGTCGCCGTCGCTGTGCGACAAGCG
CCCGTCGCCGACGCCTTGA
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protein sequence of Ggra1107.t1

>Ggra1107.t1 ID=Ggra1107.t1|Name=Ggra1107.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
MSPPPPPPPSPPPAPPPRERVSLWREGGAPRVLTGAAAAFAGGASYMYFA
RSGTAASPVAPALRAGAACALLAAPFFAVREVVAASMRVDGPVASAVSGG
VAGYFGALFTLGPYWKAVSRSAMLTGVGCGVVDALVSALDWKRKLYLLRR
HDQAVAAAAAAAADKMHGAVVDDAHAPLFSWPHWLPVLTRIDHEYEELLN
RQRATVLALQREQARIALLLRALESVKAGNRVTDVELAEATSSSSLSSSS
LSSSSLSSPSPSLCDKRPSPTP*
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mRNA from alignment at tig00000945_pilon:66466..67284-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1107.t1 ID=Ggra1107.t1|Name=Ggra1107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000945_pilon:66466..67284- (Gracilaria gracilis GNS1m male)
ATGTCGCCTCCGCCTCCGCCTCCGCCTTCGCCGCCGCCGGCGCCGCCGCC
GCGCGAGCGCGTGTCGCTGTGGCGTGAGGGCGGCGCGCCGCGCGTGCTCA
CCGGCGCGGCGGCCGCGTTTGCGGGCGGCGCGTCGTACATGTACTTTGCG
CGCAGCGGCACGGCGGCGTCGCCGGTGGCGCCCGCGCTGCGCGCCGGCGC
GGCGTGCGCGCTGCTGGCCGCGCCGTTCTTCGCCGTGCGCGAGGTGGTGG
CCGCGTCCATGCGCGTGGACGGCCCGGTGGCGTCCGCCGTGTCCGGCGGC
GTGGCCGGCTACTTTGGCGCCCTCTTCACGCTGGGCCCGTACTGGAAGGC
CGTGTCGCGCTCCGCCATGCTCACCGGCGTGGGCTGCGGCGTGGTGGACG
CGCTGGTCAGCGCGCTGGACTGGAAGCGCAAGCTGTACCTGCTGCGTCGC
CACGACCAAGCCGTGGCCGCCGCCGCCGCCGCCGCCGCCGATAAGATGCA
CGGCGCCGTCGTCGACGACGCGCACGCGCCGCTGTTCAGCTGGCCGCACT
GGCTGCCCGTGCTCACGCGCATCGACCACGAGTACGAGGAGCTGCTGAAC
AGGCAGCGCGCCACCGTGCTGGCGCTGCAGCGCGAGCAGGCGCGCATCGC
GCTGCTGCTGCGCGCGCTGGAGTCGGTCAAGGCCGGCAATCGCGTCACGG
ACGTGGAGCTGGCCGAGGCCACGTCGTCGTCGTCGCTGTCGTCGTCGTCG
CTGTCGTCGTCGTCGCTGTCGTCGCCGTCGCCGTCGCTGTGCGACAAGCG
CCCGTCGCCGACGCCTTGA
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Coding sequence (CDS) from alignment at tig00000945_pilon:66466..67284-

>Ggra1107.t1 ID=Ggra1107.t1|Name=Ggra1107.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000945_pilon:66466..67284- (Gracilaria gracilis GNS1m male)
ATGTCGCCTCCGCCTCCGCCTCCGCCTTCGCCGCCGCCGGCGCCGCCGCC
GCGCGAGCGCGTGTCGCTGTGGCGTGAGGGCGGCGCGCCGCGCGTGCTCA
CCGGCGCGGCGGCCGCGTTTGCGGGCGGCGCGTCGTACATGTACTTTGCG
CGCAGCGGCACGGCGGCGTCGCCGGTGGCGCCCGCGCTGCGCGCCGGCGC
GGCGTGCGCGCTGCTGGCCGCGCCGTTCTTCGCCGTGCGCGAGGTGGTGG
CCGCGTCCATGCGCGTGGACGGCCCGGTGGCGTCCGCCGTGTCCGGCGGC
GTGGCCGGCTACTTTGGCGCCCTCTTCACGCTGGGCCCGTACTGGAAGGC
CGTGTCGCGCTCCGCCATGCTCACCGGCGTGGGCTGCGGCGTGGTGGACG
CGCTGGTCAGCGCGCTGGACTGGAAGCGCAAGCTGTACCTGCTGCGTCGC
CACGACCAAGCCGTGGCCGCCGCCGCCGCCGCCGCCGCCGATAAGATGCA
CGGCGCCGTCGTCGACGACGCGCACGCGCCGCTGTTCAGCTGGCCGCACT
GGCTGCCCGTGCTCACGCGCATCGACCACGAGTACGAGGAGCTGCTGAAC
AGGCAGCGCGCCACCGTGCTGGCGCTGCAGCGCGAGCAGGCGCGCATCGC
GCTGCTGCTGCGCGCGCTGGAGTCGGTCAAGGCCGGCAATCGCGTCACGG
ACGTGGAGCTGGCCGAGGCCACGTCGTCGTCGTCGCTGTCGTCGTCGTCG
CTGTCGTCGTCGTCGCTGTCGTCGCCGTCGCCGTCGCTGTGCGACAAGCG
CCCGTCGCCGACGCCTTGA
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