Ggra10804.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10804.t1
Unique NameGgra10804.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length434
Homology
BLAST of Ggra10804.t1 vs. uniprot
Match: A0A2V3IQE3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQE3_9FLOR)

HSP 1 Score: 164 bits (414), Expect = 5.670e-42
Identity = 135/446 (30.27%), Postives = 229/446 (51.35%), Query Frame = 0
Query:   11 EPLLQSFSPLTPSTVFPSFDYVTKPYADALDSIASILILWSITATVCHLISVPFGMNTRSLAVRDAYDRLVNMKISCNCSS-HVR-----SCGSSHTFSNFSLRIVAFIFFVVSIGVEVLIIFTQSTIWKTRSLDDLNLRRITLAIPDEVVGSLPPMFQGCEPLLLIHPSSTSNLLSLC--------AKFFVDEPF---TPEQHVQFHFVSSDRFFAAFAS-NADRVTLGIKYS----IELNDPLGSTLYYANMTRLGFKVSSQKLRWILKTFAGRCPLCNATAYFTTRDTPVISSELNETESGYPVHIVLHKLTYMMIKKSKSQLMIRDFVSGDATDSE----SKSELREFSRGKVKRLSGLILWIAAAVVGIINWIVRAIVWDMDRDSNNMVKCMLDLPADTSLVDSPNIQLCIVEEEPFV--CPEDGECGHTERL---RLRRR 425
            + + Q+  PL P+++FPSFDYV    AD LD+++ +L+LW++++ V  LI +PF  +++SLA++  +D LV++ I   C+  H+R     S  S   F N+  +++A + F+  +  EVL+IF+Q+ I K   L+   LR +T  +P +  G +     GC  +     +S S  L LC        + F+ D      TP    Q   +    F  A  S N +R  + ++YS    IEL++ L S +  AN+TRLGF+++  K  ++       C  C  T Y  T  T ++    +     + +      + + MI+ S   L  +DF+  D ++S     S      F RG+VKR+SG ILWI A    ++N  ++ +  D++   +N V+ +L++P+D  ++ S N++  +V E   V   P++G  G+  RL   RLRRR
Sbjct:   31 DAIRQTVKPLLPNSLFPSFDYVDSEVADILDAVSIVLLLWNVSSIVSRLIFLPFRNSSKSLAIKYVFDNLVSVNI---CAVLHMRANQHHSIQSRRRFLNWGFKLIALLSFITVVLFEVLLIFSQTLISKELGLESSGLRSLTWDVPTD--GYMRISIPGCVSISESPDNSVSVPLFLCEYLGLPPNSTFYTDSGISNSTPYIEFQVQILEDTVFHIAKRSRNKNRNPVFLEYSFNYTIELHNVLTSEVILANLTRLGFQMTEAKRNYLQSALHDFCE-CTVT-YEPTNFTFLMKFSPSMPHFEF-IDANSRLIFHAMIQLSGRDLQKQDFLYVDISNSNDSGWSHVLSNNFVRGRVKRVSGFILWIFAVFFIVLNVALQFLTRDLEEVRDNAVRSVLEIPSDCDILSSKNVRARLVNERVMVESNPDNG-IGNDARLSVLRLRRR 467          
BLAST of Ggra10804.t1 vs. uniprot
Match: A0A2V3IK76 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK76_9FLOR)

HSP 1 Score: 155 bits (391), Expect = 7.840e-39
Identity = 140/445 (31.46%), Postives = 219/445 (49.21%), Query Frame = 0
Query:   13 LLQSFSPLTPSTVFPSFDYVTKPYADALDSIASILILWSITATVCHLISVPFGMNTRSLAVRDAYDRLVNMKISCNCSSHVRSCGSSHTFSNFSLRIVAFIFFVVSIGVEVLIIFTQSTIWKTRSLDDLNLRRITLAIPDEVVGSLPPMFQGCEPLLLIHPSSTSNLLSLCAK------FFV-----------DEPFTPEQHVQFHFVSSDRFFAAFASNADRVTLGIKYSIELNDPLGSTLYYANMTRLGFKVSSQKLRWILKTF--AGRCPLCNATAYFTTRDTPVISSELNETESGYPVHIV-LHKLTYM----MIKKSKSQLMIRDFV---SGDATDSESKSELREFSRGKVKRLSGLILWIAAAVVGIINWIVRAIVWDMDRDSNNMVKCMLDLPADTSLVDSPNIQLCIVEEEPFVCP----EDGECGHTER-LRLRRR 425
            L Q  +PL P T FPSFDYV KPYAD +D+I  IL+ + I A +  ++S+  G  ++SL+V   ++RLV + +S               FSN   R+ A  FFV+ + +E L+IF+Q++  + RS+ DL +R + L   +  + S  P+F  C PL+    SST+  L+LC +      F V           D  F     VQF + S+   F     ++    L I +SI+L+D   S +  AN+T+LGF++S+ +   + + F  + RC L   +   T      +    +     +P  +   HKL  +    +I+ S       DF+   + D T SE +  + E +  +VKRLSG+  WI  + + ++N I+  +V   D +  N VK + DLP D  L ++ N+ L I E E  V      E G  G  +  LRLRRR
Sbjct:   12 LTQRITPLNPHTFFPSFDYVGKPYADIVDAIVIILMQFIIAAILSKMMSLLSGGPSKSLSVISYFNRLVGLSLSAFNGQREYQVPRVRFFSNPLPRLTAMAFFVLYVTIEALLIFSQTSAPRVRSIPDLKIRSLGLMDLNLSIPSSFPVFT-CTPLVSTESSSTNVRLALCVRHQTVSYFNVSYTPVYAAQPRDNSFIGSADVQFDW-SNPSEFRIIDRHSTGQQLYISFSIQLSDSSLSKISRANLTKLGFQISATQKSKLQELFQLSCRCKLSTLSTAST------VKFSFSNITLSHPTELSRFHKLASLSFNSIIQLSNRTHRSSDFIPDGNPDITTSEVQRLVLEAAIERVKRLSGINTWILTSGLLLLNLILNCVVGSHD-ERVNAVKTVADLPPDLDLHNTANVLLVITEVEAHVSSPFSEEIGALGLPKTSLRLRRR 447          
The following BLAST results are available for this feature:
BLAST of Ggra10804.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IQE35.670e-4230.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IK767.840e-3931.46Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..64
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 347..367
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 128..346
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 105..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 368..433
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 65..104
NoneNo IPR availableTMHMMTMhelixcoord: 346..368
NoneNo IPR availableTMHMMTMhelixcoord: 43..65
NoneNo IPR availableTMHMMTMhelixcoord: 105..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000198_piloncontigtig00000198_pilon:60016..61317 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10804.t1Ggra10804.t1Gracilaria gracilis GNS1m malemRNAtig00000198_pilon 60016..61317 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10804.t1 ID=Ggra10804.t1|Name=Ggra10804.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MSTKVWQFAVEPLLQSFSPLTPSTVFPSFDYVTKPYADALDSIASILILW
SITATVCHLISVPFGMNTRSLAVRDAYDRLVNMKISCNCSSHVRSCGSSH
TFSNFSLRIVAFIFFVVSIGVEVLIIFTQSTIWKTRSLDDLNLRRITLAI
PDEVVGSLPPMFQGCEPLLLIHPSSTSNLLSLCAKFFVDEPFTPEQHVQF
HFVSSDRFFAAFASNADRVTLGIKYSIELNDPLGSTLYYANMTRLGFKVS
SQKLRWILKTFAGRCPLCNATAYFTTRDTPVISSELNETESGYPVHIVLH
KLTYMMIKKSKSQLMIRDFVSGDATDSESKSELREFSRGKVKRLSGLILW
IAAAVVGIINWIVRAIVWDMDRDSNNMVKCMLDLPADTSLVDSPNIQLCI
VEEEPFVCPEDGECGHTERLRLRRRIAKKDESH*
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