Ggra10804.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10804.t1
Unique Name	Ggra10804.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	434

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000198_pilon	contig	tig00000198_pilon:60016..61317 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10804	Ggra10804	Gracilaria gracilis GNS1m male	gene	tig00000198_pilon 60016..61317 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10804.t1.stop1	Ggra10804.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000198_pilon 60016..60018 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10804.t1.CDS1	Ggra10804.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000198_pilon 60016..61317 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10804.t1.exon1	Ggra10804.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000198_pilon 60016..61317 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10804.t1.start1	Ggra10804.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000198_pilon 61315..61317 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10804.t1	Ggra10804.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000198_pilon 60016..61317 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000198_pilon:60016..61317-
coding sequence from alignment at tig00000198_pilon:60016..61317-

mRNA sequence

>Ggra10804.t1 ID=Ggra10804.t1|Name=Ggra10804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MSTKVWQFAVEPLLQSFSPLTPSTVFPSFDYVTKPYADALDSIASILILW
SITATVCHLISVPFGMNTRSLAVRDAYDRLVNMKISCNCSSHVRSCGSSH
TFSNFSLRIVAFIFFVVSIGVEVLIIFTQSTIWKTRSLDDLNLRRITLAI
PDEVVGSLPPMFQGCEPLLLIHPSSTSNLLSLCAKFFVDEPFTPEQHVQF
HFVSSDRFFAAFASNADRVTLGIKYSIELNDPLGSTLYYANMTRLGFKVS
SQKLRWILKTFAGRCPLCNATAYFTTRDTPVISSELNETESGYPVHIVLH
KLTYMMIKKSKSQLMIRDFVSGDATDSESKSELREFSRGKVKRLSGLILW
IAAAVVGIINWIVRAIVWDMDRDSNNMVKCMLDLPADTSLVDSPNIQLCI
VEEEPFVCPEDGECGHTERLRLRRRIAKKDESH*

spliced messenger RNA

>Ggra10804.t1 ID=Ggra10804.t1|Name=Ggra10804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000198_pilon:60016..61317- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACCAAAGTGTGGCAGTTCGCCGTTGAGCCTCTATTGCAGTCGTT
CTCACCGCTGACACCATCCACGGTTTTTCCGTCGTTCGATTACGTGACTA
AACCTTATGCAGATGCTCTTGATTCCATTGCTTCAATCTTGATTTTGTGG
TCCATAACAGCAACCGTGTGTCATCTGATTTCCGTTCCCTTCGGCATGAA
TACTCGGTCGTTGGCTGTACGAGACGCGTACGATCGCCTCGTGAACATGA
AAATCTCGTGCAATTGTTCCTCTCACGTTCGTAGTTGTGGTTCCTCGCAC
ACGTTCTCCAACTTTTCCTTGCGAATCGTTGCTTTCATATTCTTCGTTGT
GTCCATTGGCGTTGAGGTTCTTATCATCTTCACGCAAAGCACAATATGGA
AAACAAGAAGTTTGGATGACCTCAATCTCCGTCGTATCACACTGGCTATT
CCAGATGAAGTTGTTGGATCGCTTCCACCAATGTTCCAAGGGTGTGAACC
ACTGCTTTTAATTCATCCGTCGAGTACCAGTAACCTTCTTTCACTTTGTG
CCAAGTTCTTTGTGGACGAACCGTTCACTCCGGAACAACATGTTCAATTC
CACTTCGTATCATCAGATCGATTCTTTGCCGCCTTTGCCTCAAACGCTGA
TAGAGTTACCCTCGGGATCAAGTATTCCATAGAGCTCAACGATCCATTAG
GGTCTACACTCTATTATGCCAATATGACCCGGCTGGGATTCAAAGTCAGC
TCCCAAAAGCTGCGGTGGATATTGAAAACCTTTGCAGGAAGATGTCCTTT
ATGTAATGCAACTGCATACTTCACTACAAGGGACACTCCTGTGATAAGCT
CCGAACTGAATGAAACAGAAAGTGGTTATCCTGTTCATATTGTGCTGCAC
AAGTTGACATATATGATGATTAAAAAATCGAAATCGCAGTTGATGATAAG
GGATTTCGTCAGTGGAGACGCAACAGACAGTGAAAGCAAGTCCGAACTAC
GTGAATTCTCAAGGGGAAAGGTGAAGAGACTGAGTGGATTGATTTTGTGG
ATTGCCGCTGCAGTTGTGGGCATCATCAACTGGATCGTTCGTGCAATCGT
GTGGGACATGGATCGAGACAGCAACAATATGGTAAAATGTATGCTAGACC
TCCCTGCTGATACCTCTCTGGTGGACTCTCCAAATATTCAATTGTGTATT
GTTGAGGAAGAGCCGTTTGTTTGTCCAGAAGATGGTGAATGTGGACATAC
GGAACGCTTGCGTCTTCGTCGACGCATTGCAAAAAAGGACGAGAGCCACT
GA

protein sequence of Ggra10804.t1

>Ggra10804.t1 ID=Ggra10804.t1|Name=Ggra10804.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MSTKVWQFAVEPLLQSFSPLTPSTVFPSFDYVTKPYADALDSIASILILW
SITATVCHLISVPFGMNTRSLAVRDAYDRLVNMKISCNCSSHVRSCGSSH
TFSNFSLRIVAFIFFVVSIGVEVLIIFTQSTIWKTRSLDDLNLRRITLAI
PDEVVGSLPPMFQGCEPLLLIHPSSTSNLLSLCAKFFVDEPFTPEQHVQF
HFVSSDRFFAAFASNADRVTLGIKYSIELNDPLGSTLYYANMTRLGFKVS
SQKLRWILKTFAGRCPLCNATAYFTTRDTPVISSELNETESGYPVHIVLH
KLTYMMIKKSKSQLMIRDFVSGDATDSESKSELREFSRGKVKRLSGLILW
IAAAVVGIINWIVRAIVWDMDRDSNNMVKCMLDLPADTSLVDSPNIQLCI
VEEEPFVCPEDGECGHTERLRLRRRIAKKDESH*

mRNA from alignment at tig00000198_pilon:60016..61317-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10804.t1 ID=Ggra10804.t1|Name=Ggra10804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000198_pilon:60016..61317- (Gracilaria gracilis GNS1m male)
ATGTCGACCAAAGTGTGGCAGTTCGCCGTTGAGCCTCTATTGCAGTCGTT
CTCACCGCTGACACCATCCACGGTTTTTCCGTCGTTCGATTACGTGACTA
AACCTTATGCAGATGCTCTTGATTCCATTGCTTCAATCTTGATTTTGTGG
TCCATAACAGCAACCGTGTGTCATCTGATTTCCGTTCCCTTCGGCATGAA
TACTCGGTCGTTGGCTGTACGAGACGCGTACGATCGCCTCGTGAACATGA
AAATCTCGTGCAATTGTTCCTCTCACGTTCGTAGTTGTGGTTCCTCGCAC
ACGTTCTCCAACTTTTCCTTGCGAATCGTTGCTTTCATATTCTTCGTTGT
GTCCATTGGCGTTGAGGTTCTTATCATCTTCACGCAAAGCACAATATGGA
AAACAAGAAGTTTGGATGACCTCAATCTCCGTCGTATCACACTGGCTATT
CCAGATGAAGTTGTTGGATCGCTTCCACCAATGTTCCAAGGGTGTGAACC
ACTGCTTTTAATTCATCCGTCGAGTACCAGTAACCTTCTTTCACTTTGTG
CCAAGTTCTTTGTGGACGAACCGTTCACTCCGGAACAACATGTTCAATTC
CACTTCGTATCATCAGATCGATTCTTTGCCGCCTTTGCCTCAAACGCTGA
TAGAGTTACCCTCGGGATCAAGTATTCCATAGAGCTCAACGATCCATTAG
GGTCTACACTCTATTATGCCAATATGACCCGGCTGGGATTCAAAGTCAGC
TCCCAAAAGCTGCGGTGGATATTGAAAACCTTTGCAGGAAGATGTCCTTT
ATGTAATGCAACTGCATACTTCACTACAAGGGACACTCCTGTGATAAGCT
CCGAACTGAATGAAACAGAAAGTGGTTATCCTGTTCATATTGTGCTGCAC
AAGTTGACATATATGATGATTAAAAAATCGAAATCGCAGTTGATGATAAG
GGATTTCGTCAGTGGAGACGCAACAGACAGTGAAAGCAAGTCCGAACTAC
GTGAATTCTCAAGGGGAAAGGTGAAGAGACTGAGTGGATTGATTTTGTGG
ATTGCCGCTGCAGTTGTGGGCATCATCAACTGGATCGTTCGTGCAATCGT
GTGGGACATGGATCGAGACAGCAACAATATGGTAAAATGTATGCTAGACC
TCCCTGCTGATACCTCTCTGGTGGACTCTCCAAATATTCAATTGTGTATT
GTTGAGGAAGAGCCGTTTGTTTGTCCAGAAGATGGTGAATGTGGACATAC
GGAACGCTTGCGTCTTCGTCGACGCATTGCAAAAAAGGACGAGAGCCACT
GA

Coding sequence (CDS) from alignment at tig00000198_pilon:60016..61317-

>Ggra10804.t1 ID=Ggra10804.t1|Name=Ggra10804.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000198_pilon:60016..61317- (Gracilaria gracilis GNS1m male)
ATGTCGACCAAAGTGTGGCAGTTCGCCGTTGAGCCTCTATTGCAGTCGTT
CTCACCGCTGACACCATCCACGGTTTTTCCGTCGTTCGATTACGTGACTA
AACCTTATGCAGATGCTCTTGATTCCATTGCTTCAATCTTGATTTTGTGG
TCCATAACAGCAACCGTGTGTCATCTGATTTCCGTTCCCTTCGGCATGAA
TACTCGGTCGTTGGCTGTACGAGACGCGTACGATCGCCTCGTGAACATGA
AAATCTCGTGCAATTGTTCCTCTCACGTTCGTAGTTGTGGTTCCTCGCAC
ACGTTCTCCAACTTTTCCTTGCGAATCGTTGCTTTCATATTCTTCGTTGT
GTCCATTGGCGTTGAGGTTCTTATCATCTTCACGCAAAGCACAATATGGA
AAACAAGAAGTTTGGATGACCTCAATCTCCGTCGTATCACACTGGCTATT
CCAGATGAAGTTGTTGGATCGCTTCCACCAATGTTCCAAGGGTGTGAACC
ACTGCTTTTAATTCATCCGTCGAGTACCAGTAACCTTCTTTCACTTTGTG
CCAAGTTCTTTGTGGACGAACCGTTCACTCCGGAACAACATGTTCAATTC
CACTTCGTATCATCAGATCGATTCTTTGCCGCCTTTGCCTCAAACGCTGA
TAGAGTTACCCTCGGGATCAAGTATTCCATAGAGCTCAACGATCCATTAG
GGTCTACACTCTATTATGCCAATATGACCCGGCTGGGATTCAAAGTCAGC
TCCCAAAAGCTGCGGTGGATATTGAAAACCTTTGCAGGAAGATGTCCTTT
ATGTAATGCAACTGCATACTTCACTACAAGGGACACTCCTGTGATAAGCT
CCGAACTGAATGAAACAGAAAGTGGTTATCCTGTTCATATTGTGCTGCAC
AAGTTGACATATATGATGATTAAAAAATCGAAATCGCAGTTGATGATAAG
GGATTTCGTCAGTGGAGACGCAACAGACAGTGAAAGCAAGTCCGAACTAC
GTGAATTCTCAAGGGGAAAGGTGAAGAGACTGAGTGGATTGATTTTGTGG
ATTGCCGCTGCAGTTGTGGGCATCATCAACTGGATCGTTCGTGCAATCGT
GTGGGACATGGATCGAGACAGCAACAATATGGTAAAATGTATGCTAGACC
TCCCTGCTGATACCTCTCTGGTGGACTCTCCAAATATTCAATTGTGTATT
GTTGAGGAAGAGCCGTTTGTTTGTCCAGAAGATGGTGAATGTGGACATAC
GGAACGCTTGCGTCTTCGTCGACGCATTGCAAAAAAGGACGAGAGCCACT
GA