Ggra10546.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10546.t1
Unique NameGgra10546.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length168
Homology
BLAST of Ggra10546.t1 vs. uniprot
Match: A0A2V3INA1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INA1_9FLOR)

HSP 1 Score: 192 bits (489), Expect = 4.300e-60
Identity = 98/167 (58.68%), Postives = 126/167 (75.45%), Query Frame = 0
Query:    1 MQFENATQAVSTAIRSIFQRWTALNLVVEYHMGGIRDEANKLMDITISMATNPSKRHDEDDFIDLFYDAFDRMQSDVEDGSPEEVASQIVRVRDAAAKGDFGLAMQLVSKVASRTSDGTNLQSIDGGEGVVSDAEEEDEPHQASPISQEPVVDDDGFTEVRKSGRHR 167
            MQFE+A QAVSTAIRSIF RWTAL LV+E+ MGG  D A +LM+I ++MATNPS+RHDEDDFIDLFY+AF+RMQ+D+EDGSPEE+A+ +VR+RDAAA+GD+  A +  + +  + S     +S+ GGE VV + E E  P +     QE + DDDGFTEV+  GRHR
Sbjct:    1 MQFESAQQAVSTAIRSIFDRWTALKLVIEHQMGGNPDPAIELMNIAVAMATNPSERHDEDDFIDLFYEAFNRMQADIEDGSPEEIAALVVRIRDAAARGDYTPASE--ASLKEQPSSQAFHRSVSGGEAVVHECEREKTPCRPPQPRQESIADDDGFTEVKSGGRHR 165          
BLAST of Ggra10546.t1 vs. uniprot
Match: A0A7S0ZFQ2 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFQ2_9RHOD)

HSP 1 Score: 80.1 bits (196), Expect = 9.490e-16
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 0
Query:    6 ATQAVSTAIRSIFQRWTALNLVVEYHMGG--IRDEANKLMDITISMATNPSKRHDEDDFIDLFYDAFDRMQSDVEDGSPEEVASQIVRVRDAAAKGDFGLAMQLVSKVASRTSDGTNL-----QSIDGGEGVVSDAEEEDEPHQASPISQEPVVDDDGFTEVRKSGRHR 167
            A + +   + + F RWTA+ + ++   GG    D    LM   +  A +      E    D  YDAFD M  D+EDGSPEE+A+ I+ +R A   GDF    +L  K A  ++   +L     ++ D  +  +  +E            QEP+VD+DGFT V+  GR R
Sbjct:    8 ALKELERGVYAAFARWTAVQIAIQERFGGRETEDIIRDLMSECVFAAASERPASVEQ-IADKMYDAFDSMNCDLEDGSPEEMATMILDLRAACLAGDFSKIRELERKAALDSNAVMSLCVRDIRNDDDDDETMDTSEASSSVRNTQNQYQEPIVDEDGFTVVQPKGRRR 175          
BLAST of Ggra10546.t1 vs. uniprot
Match: A0A5J4Z174 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z174_PORPP)

HSP 1 Score: 75.1 bits (183), Expect = 8.790e-14
Identity = 55/181 (30.39%), Postives = 85/181 (46.96%), Query Frame = 0
Query:    6 ATQAVSTAIRSIFQRWTALNLVVEYHMGGIRDEANKLMDITISMATNPSKRHDEDDFIDLFYDAFDRMQSDVEDGSPEEVASQIVRVRDAAAKGDFGLAMQLVSK---------------VASRTSDGTNLQSIDGGEG----VVSDAEEEDEPHQASPISQEPVVDDDGFTEVRKSGRHR 167
            A + +   + ++F RWTAL + ++    G + E+     I  +   +   R +++  + +FYDAFDRM  D+EDGS E++AS + ++RD    G F     LV+K               V     D     ++ G  G     V    E D P  + P +  P VD+DGFT V KS R+R
Sbjct:    8 AHRQLKRGLSALFARWTALQIALQERFAGSQTESIVQDMIETTYQLSSGSRLNQEKLVSMFYDAFDRMNCDLEDGSAEDMASAVAQLRDECHHGRFAYVDDLVAKAQRDRSAILSQNVRSVLEDNDDEXXXXTVGGQNGDSASSVPSMMETDSPTPSRPAA--PEVDEDGFTLV-KSKRNR 185          
BLAST of Ggra10546.t1 vs. uniprot
Match: putative 20S pre-rRNA processing of protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=UPI001E8E4B61 (putative 20S pre-rRNA processing of protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=UPI001E8E4B61)

HSP 1 Score: 57.0 bits (136), Expect = 6.840e-7
Identity = 49/181 (27.07%), Postives = 80/181 (44.20%), Query Frame = 0
Query:   16 SIFQRWTALNLVVEYHMGGIRDEANKLMDIT---------ISMATNPSKRH-------DEDDFIDLFYDAF-DRMQSDVEDGSPEEVASQIVRVRDAAAKGDFGLAMQLV-------SKVASRTSDGTNLQSIDGGEGVVSDAE---EEDEPHQASPIS----QEPVVDDDGFTEVRKSGR 165
            ++F  W AL L V    GG   +  +   I+         +  A  P           D+DD  ++      D  + D++DGS +EVA  +V++     KGD  +  +L        SK      +G + + +D     + D+E   ++++   A+P      QEPVVDDDGFT V+K G+
Sbjct:   20 ALFTLWPALRLAVSEEWGGPDSKEKRTWMISEVVDYFESCLPKANEPKMTEEQLAELVDQDDLAEMLEGMVSDEFEVDLDDGSADEVAGDVVKLWKKVVKGDQAMVDELEELVRTTGSKKVQAQGNGDDDEELDEDGNPLPDSEGSSDDEDIEMAAPAQPKEKQEPVVDDDGFTLVQKKGK 200          
BLAST of Ggra10546.t1 vs. uniprot
Match: A0A409XDM5 (Uncharacterized protein n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409XDM5_PSICY)

HSP 1 Score: 55.1 bits (131), Expect = 2.910e-6
Identity = 49/167 (29.34%), Postives = 73/167 (43.71%), Query Frame = 0
Query:   21 WTALNLVVEYHMGGIRDEANK------LMDITISMATNPSKRHDEDDFIDLFYDAFDRMQSDVEDGSPEEVASQIVRVRDAAAKGDFGLAMQLVSKVASRTSDGTNLQSIDGGEGVVSDAEE-EDEP---------------HQASPISQEPVVDDDGFTEVRKSGR 165
            WT L + V+ + GG    A +      ++D        P  ++ E+  + +  D F+ +   VEDGSPE VA  IVR+ D    G   L ++         +D    +  D  E VV+D EE  DE                H+    S+EP +D+DGFT V+  GR
Sbjct:   28 WTTLRIAVQENWGGPDAAAKRTWLASVIVDAFEEQNAAPDDQYIEEMILQIMEDEFEAV---VEDGSPESVARDIVRLWDETRIGSQDLVLKF-----EELADKLKGKKPDVQEQVVNDEEEWSDEDXXXXXXXXEAPQLLDHKTPKASKEPEIDEDGFTMVKGKGR 186          
The following BLAST results are available for this feature:
BLAST of Ggra10546.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3INA14.300e-6058.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S0ZFQ29.490e-1631.95Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z1748.790e-1430.39Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
putative 20S pre-rRNA processing of protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=UPI001E8E4B616.840e-727.07putative 20S pre-rRNA processing of protein n=1 Ta... [more]
A0A409XDM52.910e-629.34Uncharacterized protein n=1 Tax=Psilocybe cyanesce... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 12..87
e-value: 1.1E-7
score: 32.2
IPR019398Pre-rRNA-processing protein TSR2PANTHERPTHR21250UNCHARACTERIZEDcoord: 5..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..167
NoneNo IPR availablePANTHERPTHR21250:SF0PRE-RRNA-PROCESSING PROTEIN TSR2 HOMOLOGcoord: 5..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:156733..157236 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10546.t1Ggra10546.t1Gracilaria gracilis GNS1m malemRNAtig00000904_pilon 156733..157236 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10546.t1 ID=Ggra10546.t1|Name=Ggra10546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=168bp
MQFENATQAVSTAIRSIFQRWTALNLVVEYHMGGIRDEANKLMDITISMA
TNPSKRHDEDDFIDLFYDAFDRMQSDVEDGSPEEVASQIVRVRDAAAKGD
FGLAMQLVSKVASRTSDGTNLQSIDGGEGVVSDAEEEDEPHQASPISQEP
VVDDDGFTEVRKSGRHR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019398Pre-rRNA_process_TSR2