Ggra10546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10546.t1
Unique NameGgra10546.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:156733..157236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR08G16870.1
PFAMsWGG
Max annot lvl35493|Streptophyta
KEGG koko:K14800
Evalue3.98e-08
EggNOG OGsKOG4032@1|root,KOG4032@2759|Eukaryota,37V0F@33090|Viridiplantae,3GIKD@35493|Streptophyta,3KZMI@4447|Liliopsida,3IC3I@38820|Poales
DescriptionPre-rRNA-processing protein TSR2
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10546Ggra10546Gracilaria gracilis GNS1m malegenetig00000904_pilon 156733..157236 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10546.t1.start1Ggra10546.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 156733..156735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10546.t1.CDS1Ggra10546.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 156733..157236 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10546.t1.exon1Ggra10546.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 156733..157236 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10546.t1.stop1Ggra10546.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 157234..157236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10546.t1Ggra10546.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 156733..157236 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10546.t1 ID=Ggra10546.t1|Name=Ggra10546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=168bp
MQFENATQAVSTAIRSIFQRWTALNLVVEYHMGGIRDEANKLMDITISMA
TNPSKRHDEDDFIDLFYDAFDRMQSDVEDGSPEEVASQIVRVRDAAAKGD
FGLAMQLVSKVASRTSDGTNLQSIDGGEGVVSDAEEEDEPHQASPISQEP
VVDDDGFTEVRKSGRHR*
back to top

spliced messenger RNA

>Ggra10546.t1 ID=Ggra10546.t1|Name=Ggra10546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000904_pilon:156733..157236+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCGAGAACGCGACGCAAGCTGTATCGACGGCTATCCGCTCTAT
CTTTCAAAGGTGGACGGCATTGAACCTTGTTGTGGAATATCATATGGGAG
GAATTAGAGACGAAGCAAACAAACTAATGGACATCACAATCTCCATGGCA
ACAAACCCCTCAAAGCGTCATGATGAAGACGATTTCATTGACTTGTTTTA
TGATGCTTTCGATCGTATGCAATCTGACGTAGAGGACGGCAGTCCTGAGG
AAGTTGCGTCTCAGATCGTTCGAGTGCGAGATGCTGCTGCGAAAGGCGAT
TTTGGACTGGCTATGCAGCTCGTATCAAAAGTGGCAAGCAGAACGAGCGA
CGGAACTAATCTTCAGTCCATAGATGGTGGTGAAGGCGTCGTTTCTGATG
CTGAAGAGGAGGATGAGCCACATCAAGCCTCACCAATATCACAAGAACCA
GTGGTAGATGACGACGGATTTACTGAAGTAAGGAAGAGCGGGAGGCACCG
ATGA
back to top

protein sequence of Ggra10546.t1

>Ggra10546.t1 ID=Ggra10546.t1|Name=Ggra10546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=168bp
MQFENATQAVSTAIRSIFQRWTALNLVVEYHMGGIRDEANKLMDITISMA
TNPSKRHDEDDFIDLFYDAFDRMQSDVEDGSPEEVASQIVRVRDAAAKGD
FGLAMQLVSKVASRTSDGTNLQSIDGGEGVVSDAEEEDEPHQASPISQEP
VVDDDGFTEVRKSGRHR*
back to top

mRNA from alignment at tig00000904_pilon:156733..157236+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10546.t1 ID=Ggra10546.t1|Name=Ggra10546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000904_pilon:156733..157236+ (Gracilaria gracilis GNS1m male)
ATGCAGTTCGAGAACGCGACGCAAGCTGTATCGACGGCTATCCGCTCTAT
CTTTCAAAGGTGGACGGCATTGAACCTTGTTGTGGAATATCATATGGGAG
GAATTAGAGACGAAGCAAACAAACTAATGGACATCACAATCTCCATGGCA
ACAAACCCCTCAAAGCGTCATGATGAAGACGATTTCATTGACTTGTTTTA
TGATGCTTTCGATCGTATGCAATCTGACGTAGAGGACGGCAGTCCTGAGG
AAGTTGCGTCTCAGATCGTTCGAGTGCGAGATGCTGCTGCGAAAGGCGAT
TTTGGACTGGCTATGCAGCTCGTATCAAAAGTGGCAAGCAGAACGAGCGA
CGGAACTAATCTTCAGTCCATAGATGGTGGTGAAGGCGTCGTTTCTGATG
CTGAAGAGGAGGATGAGCCACATCAAGCCTCACCAATATCACAAGAACCA
GTGGTAGATGACGACGGATTTACTGAAGTAAGGAAGAGCGGGAGGCACCG
ATGA
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:156733..157236+

>Ggra10546.t1 ID=Ggra10546.t1|Name=Ggra10546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00000904_pilon:156733..157236+ (Gracilaria gracilis GNS1m male)
ATGCAGTTCGAGAACGCGACGCAAGCTGTATCGACGGCTATCCGCTCTAT
CTTTCAAAGGTGGACGGCATTGAACCTTGTTGTGGAATATCATATGGGAG
GAATTAGAGACGAAGCAAACAAACTAATGGACATCACAATCTCCATGGCA
ACAAACCCCTCAAAGCGTCATGATGAAGACGATTTCATTGACTTGTTTTA
TGATGCTTTCGATCGTATGCAATCTGACGTAGAGGACGGCAGTCCTGAGG
AAGTTGCGTCTCAGATCGTTCGAGTGCGAGATGCTGCTGCGAAAGGCGAT
TTTGGACTGGCTATGCAGCTCGTATCAAAAGTGGCAAGCAGAACGAGCGA
CGGAACTAATCTTCAGTCCATAGATGGTGGTGAAGGCGTCGTTTCTGATG
CTGAAGAGGAGGATGAGCCACATCAAGCCTCACCAATATCACAAGAACCA
GTGGTAGATGACGACGGATTTACTGAAGTAAGGAAGAGCGGGAGGCACCG
ATGA
back to top