Ggra10239.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra10239.t1
Unique Name	Ggra10239.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	558

Homology

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BLAST of Ggra10239.t1 vs. uniprot
Match: A0A2V3IFU4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFU4_9FLOR)

HSP 1 Score: 588 bits (1515), Expect = 9.330e-204
Identity = 303/564 (53.72%), Postives = 391/564 (69.33%), Query Frame = 0

Query:    2 LIGLVHGSERLEKP-FSLTSIAHVKKAIENLRMKDKNAVPDKNASMWNLDFLKHIAEMKDLSEKTIQTELSSSPETRTKSLADNPEGATDKKESAEEKAKGGDNPSLARMLKELVKSVTDASQKR-----SSHSSIRIGEADIPIEKVTAVGDVDGNGFEDYIVANPSSKNGTGTIRLYLMTADSKFLYTRDLVPGRYGFVSSPLAEGDRFGDSVEKITSDTPNFSFVTVTAPGDRSVAGGKGAFYILQLSDKGNVINSAKLSAKTIETVVARSANGDE--SKYSANLNRSILSKKIVDILSNKTSMLLVRKGGEIKGAYVISSAEDHKMLQDIEQKMTPRKRLASLRLESPLVRADISSNCFFNDTHCACASNAPPAGSGQCTQVIGTEQSSGKTLCQTRDCMASYSCMCEGIQLCARSERTLTSYTVEGAAPGGNMYCNSVQKTITENVVIAGAEVPVILSVNDLPPYNATHCRCAQKQSVTGTAICLDVVRALSGVNYVCSERNCRIGAGEYICDAFGDSYCSRSFEEKMHYVKDGEKTDEAGAVFCHREAYQAESVTKIL 557
            L G++H +E  E+      ++AH++KA+E L  K+KN V   N++ WNL FLK + +    ++K   TE   SPE   +      E  TD                      EL +++T    +      S    + IGE+ IP  KV AVGDVDGNG ED+IV NP+S    GTIRLYLM  D+KFLYTRDLVPG+YGF S  L  GDRFG SV KI++D+PNFSF+ VTAPGDR V G KGAFY+LQLSDKGNV+N+ KLSA TIE + ++ ++G E  S     L  S LSK+IVDILSNKTSMLLVRK G+IKGAYVISS +D  +L+ +E++MTPR +L ++RL SP VR  +SS+CFFNDTHCAC S +P  GS  CTQV+GT+QS+G+TLCQ RDC AS+ C C+G  LC R+ERT+TSY  EG APGG MYC+  Q+TITENVVI GA VPV++ +NDLPP+NATHCRC  KQ++ G++ CLD +R  S +  VCS R CRIG+ E++CDAFGDSYC R+F +K+HYV +G++ +E G V+CHRE+YQ+E + K+L
Sbjct:   18 LFGVLHATESTERATLGSKTLAHMRKAVEYLSAKEKNDVKT-NSAPWNLHFLKVMVDKAGNADKVNATEHFQSPEPVIE------ESTTD----------------------ELNQNMTTGKSQSPVKPGSEEDFVMIGESKIPANKVAAVGDVDGNGVEDFIVRNPASNYNRGTIRLYLMAKDNKFLYTRDLVPGKYGFNSDSLKPGDRFGASVLKISNDSPNFSFIAVTAPGDRMVPGKKGAFYVLQLSDKGNVLNNVKLSASTIEKIASQQSSGREVDSVTIPELKESSLSKRIVDILSNKTSMLLVRKEGQIKGAYVISSNDDQMLLKHLEKQMTPRNKLETMRLLSPAVRPALSSSCFFNDTHCACGSKSPTVGSNDCTQVVGTDQSTGRTLCQKRDCQASFQCSCDGTSLCQRAERTMTSYITEGPAPGGMMYCSPQQRTITENVVIPGASVPVVVDINDLPPFNATHCRCTPKQAIVGSSTCLDFLRTESSIAIVCSVRECRIGSSEHVCDAFGDSYCERTFADKIHYVNNGDRLNEPGTVYCHRESYQSEVLVKVL 552

The following BLAST results are available for this feature:

BLAST of Ggra10239.t1 vs. uniprot

BLAST of Ggra10239.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IFU4	9.330e-204	53.72	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028994	Integrin alpha, N-terminal	GENE3D	2.130.10.130		coord: 141..310 e-value: 4.5E-8 score: 34.7
IPR028994	Integrin alpha, N-terminal	SUPERFAMILY	69318	Integrin alpha N-terminal domain	coord: 144..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:185273..186946 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10239.t1	Ggra10239.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000016_pilon 185273..186946 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra10239.t1 ID=Ggra10239.t1|Name=Ggra10239.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=558bp
MLIGLVHGSERLEKPFSLTSIAHVKKAIENLRMKDKNAVPDKNASMWNLD
FLKHIAEMKDLSEKTIQTELSSSPETRTKSLADNPEGATDKKESAEEKAK
GGDNPSLARMLKELVKSVTDASQKRSSHSSIRIGEADIPIEKVTAVGDVD
GNGFEDYIVANPSSKNGTGTIRLYLMTADSKFLYTRDLVPGRYGFVSSPL
AEGDRFGDSVEKITSDTPNFSFVTVTAPGDRSVAGGKGAFYILQLSDKGN
VINSAKLSAKTIETVVARSANGDESKYSANLNRSILSKKIVDILSNKTSM
LLVRKGGEIKGAYVISSAEDHKMLQDIEQKMTPRKRLASLRLESPLVRAD
ISSNCFFNDTHCACASNAPPAGSGQCTQVIGTEQSSGKTLCQTRDCMASY
SCMCEGIQLCARSERTLTSYTVEGAAPGGNMYCNSVQKTITENVVIAGAE
VPVILSVNDLPPYNATHCRCAQKQSVTGTAICLDVVRALSGVNYVCSERN
CRIGAGEYICDAFGDSYCSRSFEEKMHYVKDGEKTDEAGAVFCHREAYQA
ESVTKIL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028994	Integrin_alpha_N