Ggra10239.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10239.t1
Unique Name	Ggra10239.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	558

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:185273..186946 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10239	Ggra10239	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 185273..186946 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10239.t1.start1	Ggra10239.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 185273..185275 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10239.t1.CDS1	Ggra10239.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 185273..186946 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10239.t1.exon1	Ggra10239.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 185273..186946 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10239.t1.stop1	Ggra10239.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 186944..186946 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10239.t1	Ggra10239.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 185273..186946 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:185273..186946+
coding sequence from alignment at tig00000016_pilon:185273..186946+

mRNA sequence

>Ggra10239.t1 ID=Ggra10239.t1|Name=Ggra10239.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp
MLIGLVHGSERLEKPFSLTSIAHVKKAIENLRMKDKNAVPDKNASMWNLD
FLKHIAEMKDLSEKTIQTELSSSPETRTKSLADNPEGATDKKESAEEKAK
GGDNPSLARMLKELVKSVTDASQKRSSHSSIRIGEADIPIEKVTAVGDVD
GNGFEDYIVANPSSKNGTGTIRLYLMTADSKFLYTRDLVPGRYGFVSSPL
AEGDRFGDSVEKITSDTPNFSFVTVTAPGDRSVAGGKGAFYILQLSDKGN
VINSAKLSAKTIETVVARSANGDESKYSANLNRSILSKKIVDILSNKTSM
LLVRKGGEIKGAYVISSAEDHKMLQDIEQKMTPRKRLASLRLESPLVRAD
ISSNCFFNDTHCACASNAPPAGSGQCTQVIGTEQSSGKTLCQTRDCMASY
SCMCEGIQLCARSERTLTSYTVEGAAPGGNMYCNSVQKTITENVVIAGAE
VPVILSVNDLPPYNATHCRCAQKQSVTGTAICLDVVRALSGVNYVCSERN
CRIGAGEYICDAFGDSYCSRSFEEKMHYVKDGEKTDEAGAVFCHREAYQA
ESVTKIL*

spliced messenger RNA

>Ggra10239.t1 ID=Ggra10239.t1|Name=Ggra10239.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000016_pilon:185273..186946+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATCGGCCTAGTACACGGAAGCGAGCGCTTGGAGAAGCCGTTTAG
TTTGACATCGATTGCGCATGTGAAGAAAGCGATCGAGAATCTTCGCATGA
AGGACAAAAACGCTGTACCGGACAAGAATGCGTCCATGTGGAATCTGGAC
TTTCTGAAGCACATTGCCGAGATGAAGGACCTCTCTGAAAAGACTATTCA
AACTGAACTCTCCAGTTCTCCAGAAACCAGGACCAAGAGTCTCGCTGACA
ACCCTGAAGGGGCCACTGATAAAAAGGAAAGCGCTGAGGAGAAAGCGAAG
GGCGGAGACAACCCGTCCCTCGCTCGCATGTTGAAAGAATTGGTCAAGTC
CGTCACAGACGCCTCTCAGAAACGTTCATCGCATTCGTCTATTCGAATCG
GAGAAGCCGACATTCCAATAGAAAAAGTGACCGCTGTGGGAGATGTTGAC
GGAAACGGCTTTGAAGATTACATCGTGGCAAATCCGAGTTCCAAGAATGG
CACTGGTACAATTCGTCTATATCTCATGACCGCGGACAGCAAGTTCTTGT
ATACCAGAGACCTGGTACCCGGAAGGTATGGCTTCGTCAGTTCCCCACTG
GCTGAAGGAGATCGATTCGGTGACTCCGTGGAGAAGATTACAAGCGATAC
GCCCAACTTTTCGTTCGTGACTGTCACCGCGCCTGGAGACCGCTCCGTAG
CAGGAGGCAAAGGAGCATTCTACATCCTGCAACTATCCGACAAGGGAAAT
GTGATCAACAGTGCCAAGTTATCAGCCAAGACGATCGAAACAGTAGTGGC
TCGATCCGCCAACGGCGACGAATCCAAATACTCGGCCAATCTCAACCGGT
CTATACTCTCCAAGAAGATTGTAGACATTTTGAGCAACAAGACGTCAATG
CTGCTCGTTCGCAAGGGCGGAGAGATCAAAGGAGCGTACGTAATCTCTTC
TGCTGAGGATCACAAGATGTTGCAAGACATTGAACAAAAGATGACTCCCA
GAAAACGGCTGGCATCTCTTCGACTGGAATCGCCTCTCGTTCGAGCGGAC
ATTTCAAGCAACTGCTTCTTCAACGACACGCACTGTGCGTGCGCATCAAA
CGCACCTCCAGCAGGGTCTGGGCAATGCACGCAAGTGATCGGCACGGAGC
AATCGAGCGGGAAGACGCTGTGTCAGACGCGAGACTGCATGGCATCTTAC
TCTTGCATGTGCGAAGGCATACAACTTTGTGCACGAAGCGAGCGCACATT
AACGTCGTACACAGTGGAAGGCGCAGCTCCGGGTGGAAACATGTACTGCA
ACAGCGTACAAAAGACAATCACAGAAAACGTGGTGATTGCAGGCGCTGAA
GTGCCGGTGATTCTAAGCGTGAATGACTTGCCACCGTACAACGCGACTCA
TTGTCGGTGCGCGCAGAAACAATCAGTGACAGGCACGGCGATATGTCTGG
ACGTCGTGCGCGCTCTAAGTGGGGTGAACTACGTGTGTTCTGAGAGGAAT
TGTAGGATTGGAGCGGGTGAATACATTTGCGATGCGTTTGGAGACTCGTA
CTGTTCTCGCAGCTTCGAGGAGAAGATGCATTACGTGAAGGACGGGGAGA
AGACAGATGAGGCCGGAGCGGTGTTCTGTCATCGCGAAGCATACCAAGCT
GAAAGCGTGACGAAGATACTTTAA

protein sequence of Ggra10239.t1

>Ggra10239.t1 ID=Ggra10239.t1|Name=Ggra10239.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=558bp
MLIGLVHGSERLEKPFSLTSIAHVKKAIENLRMKDKNAVPDKNASMWNLD
FLKHIAEMKDLSEKTIQTELSSSPETRTKSLADNPEGATDKKESAEEKAK
GGDNPSLARMLKELVKSVTDASQKRSSHSSIRIGEADIPIEKVTAVGDVD
GNGFEDYIVANPSSKNGTGTIRLYLMTADSKFLYTRDLVPGRYGFVSSPL
AEGDRFGDSVEKITSDTPNFSFVTVTAPGDRSVAGGKGAFYILQLSDKGN
VINSAKLSAKTIETVVARSANGDESKYSANLNRSILSKKIVDILSNKTSM
LLVRKGGEIKGAYVISSAEDHKMLQDIEQKMTPRKRLASLRLESPLVRAD
ISSNCFFNDTHCACASNAPPAGSGQCTQVIGTEQSSGKTLCQTRDCMASY
SCMCEGIQLCARSERTLTSYTVEGAAPGGNMYCNSVQKTITENVVIAGAE
VPVILSVNDLPPYNATHCRCAQKQSVTGTAICLDVVRALSGVNYVCSERN
CRIGAGEYICDAFGDSYCSRSFEEKMHYVKDGEKTDEAGAVFCHREAYQA
ESVTKIL*

mRNA from alignment at tig00000016_pilon:185273..186946+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10239.t1 ID=Ggra10239.t1|Name=Ggra10239.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000016_pilon:185273..186946+ (Gracilaria gracilis GNS1m male)
ATGCTCATCGGCCTAGTACACGGAAGCGAGCGCTTGGAGAAGCCGTTTAG
TTTGACATCGATTGCGCATGTGAAGAAAGCGATCGAGAATCTTCGCATGA
AGGACAAAAACGCTGTACCGGACAAGAATGCGTCCATGTGGAATCTGGAC
TTTCTGAAGCACATTGCCGAGATGAAGGACCTCTCTGAAAAGACTATTCA
AACTGAACTCTCCAGTTCTCCAGAAACCAGGACCAAGAGTCTCGCTGACA
ACCCTGAAGGGGCCACTGATAAAAAGGAAAGCGCTGAGGAGAAAGCGAAG
GGCGGAGACAACCCGTCCCTCGCTCGCATGTTGAAAGAATTGGTCAAGTC
CGTCACAGACGCCTCTCAGAAACGTTCATCGCATTCGTCTATTCGAATCG
GAGAAGCCGACATTCCAATAGAAAAAGTGACCGCTGTGGGAGATGTTGAC
GGAAACGGCTTTGAAGATTACATCGTGGCAAATCCGAGTTCCAAGAATGG
CACTGGTACAATTCGTCTATATCTCATGACCGCGGACAGCAAGTTCTTGT
ATACCAGAGACCTGGTACCCGGAAGGTATGGCTTCGTCAGTTCCCCACTG
GCTGAAGGAGATCGATTCGGTGACTCCGTGGAGAAGATTACAAGCGATAC
GCCCAACTTTTCGTTCGTGACTGTCACCGCGCCTGGAGACCGCTCCGTAG
CAGGAGGCAAAGGAGCATTCTACATCCTGCAACTATCCGACAAGGGAAAT
GTGATCAACAGTGCCAAGTTATCAGCCAAGACGATCGAAACAGTAGTGGC
TCGATCCGCCAACGGCGACGAATCCAAATACTCGGCCAATCTCAACCGGT
CTATACTCTCCAAGAAGATTGTAGACATTTTGAGCAACAAGACGTCAATG
CTGCTCGTTCGCAAGGGCGGAGAGATCAAAGGAGCGTACGTAATCTCTTC
TGCTGAGGATCACAAGATGTTGCAAGACATTGAACAAAAGATGACTCCCA
GAAAACGGCTGGCATCTCTTCGACTGGAATCGCCTCTCGTTCGAGCGGAC
ATTTCAAGCAACTGCTTCTTCAACGACACGCACTGTGCGTGCGCATCAAA
CGCACCTCCAGCAGGGTCTGGGCAATGCACGCAAGTGATCGGCACGGAGC
AATCGAGCGGGAAGACGCTGTGTCAGACGCGAGACTGCATGGCATCTTAC
TCTTGCATGTGCGAAGGCATACAACTTTGTGCACGAAGCGAGCGCACATT
AACGTCGTACACAGTGGAAGGCGCAGCTCCGGGTGGAAACATGTACTGCA
ACAGCGTACAAAAGACAATCACAGAAAACGTGGTGATTGCAGGCGCTGAA
GTGCCGGTGATTCTAAGCGTGAATGACTTGCCACCGTACAACGCGACTCA
TTGTCGGTGCGCGCAGAAACAATCAGTGACAGGCACGGCGATATGTCTGG
ACGTCGTGCGCGCTCTAAGTGGGGTGAACTACGTGTGTTCTGAGAGGAAT
TGTAGGATTGGAGCGGGTGAATACATTTGCGATGCGTTTGGAGACTCGTA
CTGTTCTCGCAGCTTCGAGGAGAAGATGCATTACGTGAAGGACGGGGAGA
AGACAGATGAGGCCGGAGCGGTGTTCTGTCATCGCGAAGCATACCAAGCT
GAAAGCGTGACGAAGATACTTTAA

Coding sequence (CDS) from alignment at tig00000016_pilon:185273..186946+

>Ggra10239.t1 ID=Ggra10239.t1|Name=Ggra10239.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1674bp|location=Sequence derived from alignment at tig00000016_pilon:185273..186946+ (Gracilaria gracilis GNS1m male)
ATGCTCATCGGCCTAGTACACGGAAGCGAGCGCTTGGAGAAGCCGTTTAG
TTTGACATCGATTGCGCATGTGAAGAAAGCGATCGAGAATCTTCGCATGA
AGGACAAAAACGCTGTACCGGACAAGAATGCGTCCATGTGGAATCTGGAC
TTTCTGAAGCACATTGCCGAGATGAAGGACCTCTCTGAAAAGACTATTCA
AACTGAACTCTCCAGTTCTCCAGAAACCAGGACCAAGAGTCTCGCTGACA
ACCCTGAAGGGGCCACTGATAAAAAGGAAAGCGCTGAGGAGAAAGCGAAG
GGCGGAGACAACCCGTCCCTCGCTCGCATGTTGAAAGAATTGGTCAAGTC
CGTCACAGACGCCTCTCAGAAACGTTCATCGCATTCGTCTATTCGAATCG
GAGAAGCCGACATTCCAATAGAAAAAGTGACCGCTGTGGGAGATGTTGAC
GGAAACGGCTTTGAAGATTACATCGTGGCAAATCCGAGTTCCAAGAATGG
CACTGGTACAATTCGTCTATATCTCATGACCGCGGACAGCAAGTTCTTGT
ATACCAGAGACCTGGTACCCGGAAGGTATGGCTTCGTCAGTTCCCCACTG
GCTGAAGGAGATCGATTCGGTGACTCCGTGGAGAAGATTACAAGCGATAC
GCCCAACTTTTCGTTCGTGACTGTCACCGCGCCTGGAGACCGCTCCGTAG
CAGGAGGCAAAGGAGCATTCTACATCCTGCAACTATCCGACAAGGGAAAT
GTGATCAACAGTGCCAAGTTATCAGCCAAGACGATCGAAACAGTAGTGGC
TCGATCCGCCAACGGCGACGAATCCAAATACTCGGCCAATCTCAACCGGT
CTATACTCTCCAAGAAGATTGTAGACATTTTGAGCAACAAGACGTCAATG
CTGCTCGTTCGCAAGGGCGGAGAGATCAAAGGAGCGTACGTAATCTCTTC
TGCTGAGGATCACAAGATGTTGCAAGACATTGAACAAAAGATGACTCCCA
GAAAACGGCTGGCATCTCTTCGACTGGAATCGCCTCTCGTTCGAGCGGAC
ATTTCAAGCAACTGCTTCTTCAACGACACGCACTGTGCGTGCGCATCAAA
CGCACCTCCAGCAGGGTCTGGGCAATGCACGCAAGTGATCGGCACGGAGC
AATCGAGCGGGAAGACGCTGTGTCAGACGCGAGACTGCATGGCATCTTAC
TCTTGCATGTGCGAAGGCATACAACTTTGTGCACGAAGCGAGCGCACATT
AACGTCGTACACAGTGGAAGGCGCAGCTCCGGGTGGAAACATGTACTGCA
ACAGCGTACAAAAGACAATCACAGAAAACGTGGTGATTGCAGGCGCTGAA
GTGCCGGTGATTCTAAGCGTGAATGACTTGCCACCGTACAACGCGACTCA
TTGTCGGTGCGCGCAGAAACAATCAGTGACAGGCACGGCGATATGTCTGG
ACGTCGTGCGCGCTCTAAGTGGGGTGAACTACGTGTGTTCTGAGAGGAAT
TGTAGGATTGGAGCGGGTGAATACATTTGCGATGCGTTTGGAGACTCGTA
CTGTTCTCGCAGCTTCGAGGAGAAGATGCATTACGTGAAGGACGGGGAGA
AGACAGATGAGGCCGGAGCGGTGTTCTGTCATCGCGAAGCATACCAAGCT
GAAAGCGTGACGAAGATACTTTAA