Ggra10204.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10204.t1
Unique NameGgra10204.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Homology
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BLAST of Ggra10204.t1 vs. uniprot
Match: A0A2V3ILH1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILH1_9FLOR)

HSP 1 Score: 330 bits (845), Expect = 6.870e-107
Identity = 176/291 (60.48%), Postives = 220/291 (75.60%), Query Frame = 0 
Query:  228 MSFLEDLPLEQTHHFVQRLRTRLWAIRRHLPVVRLVDRAGEARFTRLPRVRFVRDEKVRLSEWLTGLDGFQRFPPPSAFDATMRERMLMEVDTYQAAQTLLRDNVKLCCPPELQLQAAEWRTVSGKPLFIRNDVEGMTVFAATFNVARQIGASELILSTRIAACAAHVESSLLRCE-GVLQRLTAARSPGWTRGGGGDGVAVGVVGDSADSQFVRSVPALLRVARLTGAHTVWMEDARLRIRGRDIKQLLQWIVAAAQAARGAEAAGLSCASVTAVLLKWRALCFDDAMLL 517
            MSF EDLPLEQ HHFVQ+LR  LWAIRRHLP VRLVDRAG ARFTR PRVRFVRDEKVRLSEWL+GL G QRFPP SAFD TMRER++MEVD++ AA++++R+ + L CP ELQ+QAA  RTVSG+PLF+RN  EG+ VFAATFNVA+QIGA+E++LST +AACA    S     E G     +   S GW+  G  + V+VGVVG+ A+S  + ++PALL+V +L GA+ +W+ED RLRI G  +K+L+  I  A QAA  AE AG++C+S+  VL KW ALCFD  ++L
Sbjct:    1 MSFAEDLPLEQAHHFVQKLRASLWAIRRHLPSVRLVDRAGGARFTRHPRVRFVRDEKVRLSEWLSGLGGLQRFPPASAFDPTMRERLMMEVDSFLAAESVIRERISLACPTELQIQAATSRTVSGQPLFMRNASEGVMVFAATFNVAKQIGANEVVLSTEVAACADEAVSHFSSEEAGRWFGGSGRASLGWSSAG--ERVSVGVVGEQANSVLLNALPALLKVVQLVGANALWIEDVRLRIDGAHVKRLIHSIRDALQAALCAEVAGVNCSSLRGVLEKWLALCFDQRVVL 289
The following BLAST results are available for this feature:
BLAST of Ggra10204.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILH16.870e-10760.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 15..61
e-value: 5.1E-5
score: 23.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:84816..86378 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10204.t1Ggra10204.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 84816..86378 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10204.t1 ID=Ggra10204.t1|Name=Ggra10204.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MDCLRPHRHHAVKALLDLPDELLLLIFARLCPSTTDYTEATVRRTRDALN
LARTCTRLKQLFAETTSVFAKQAHSLNLQHPAPPHALLCLPRTEIDTIRF
ILNKGRRSLRCVRLTALGDAHNEVMAQLYRCDYIRDLQFVDANSSAAVSS
RDVPCTPFSLLSFVPWSFGRRLRRLVVVKPSHETIRAFANTWCSPTHVAL
FRMSPTVMRDSTTEHLPRLLRQASSFSMSFLEDLPLEQTHHFVQRLRTRL
WAIRRHLPVVRLVDRAGEARFTRLPRVRFVRDEKVRLSEWLTGLDGFQRF
PPPSAFDATMRERMLMEVDTYQAAQTLLRDNVKLCCPPELQLQAAEWRTV
SGKPLFIRNDVEGMTVFAATFNVARQIGASELILSTRIAACAAHVESSLL
RCEGVLQRLTAARSPGWTRGGGGDGVAVGVVGDSADSQFVRSVPALLRVA
RLTGAHTVWMEDARLRIRGRDIKQLLQWIVAAAQAARGAEAAGLSCASVT
AVLLKWRALCFDDAMLLAPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom