Ggra10204.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10204.t1
Unique Name	Ggra10204.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	521

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:84816..86378 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10204	Ggra10204	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 84816..86378 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10204.t1.start1	Ggra10204.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 84816..84818 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10204.t1.CDS1	Ggra10204.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 84816..86378 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10204.t1.exon1	Ggra10204.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 84816..86378 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10204.t1.stop1	Ggra10204.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 86376..86378 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10204.t1	Ggra10204.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 84816..86378 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:84816..86378+
coding sequence from alignment at tig00000016_pilon:84816..86378+

mRNA sequence

>Ggra10204.t1 ID=Ggra10204.t1|Name=Ggra10204.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=521bp
MDCLRPHRHHAVKALLDLPDELLLLIFARLCPSTTDYTEATVRRTRDALN
LARTCTRLKQLFAETTSVFAKQAHSLNLQHPAPPHALLCLPRTEIDTIRF
ILNKGRRSLRCVRLTALGDAHNEVMAQLYRCDYIRDLQFVDANSSAAVSS
RDVPCTPFSLLSFVPWSFGRRLRRLVVVKPSHETIRAFANTWCSPTHVAL
FRMSPTVMRDSTTEHLPRLLRQASSFSMSFLEDLPLEQTHHFVQRLRTRL
WAIRRHLPVVRLVDRAGEARFTRLPRVRFVRDEKVRLSEWLTGLDGFQRF
PPPSAFDATMRERMLMEVDTYQAAQTLLRDNVKLCCPPELQLQAAEWRTV
SGKPLFIRNDVEGMTVFAATFNVARQIGASELILSTRIAACAAHVESSLL
RCEGVLQRLTAARSPGWTRGGGGDGVAVGVVGDSADSQFVRSVPALLRVA
RLTGAHTVWMEDARLRIRGRDIKQLLQWIVAAAQAARGAEAAGLSCASVT
AVLLKWRALCFDDAMLLAPV*

spliced messenger RNA

>Ggra10204.t1 ID=Ggra10204.t1|Name=Ggra10204.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000016_pilon:84816..86378+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTGCCTTCGCCCCCATCGACACCACGCCGTCAAAGCGCTGCTCGA
CCTGCCTGACGAACTGCTTTTGCTAATCTTTGCGCGTCTGTGCCCGTCCA
CAACAGACTATACCGAAGCAACGGTGAGGAGAACGCGGGACGCACTTAAC
CTTGCTCGCACATGCACGCGTCTGAAACAGTTGTTCGCTGAAACGACGTC
CGTGTTTGCAAAACAGGCGCATAGCCTCAACTTGCAGCACCCCGCTCCAC
CACATGCGTTGCTCTGCCTGCCCCGAACAGAGATTGACACCATAAGGTTC
ATCTTAAACAAAGGGCGACGTTCGCTGAGATGTGTGCGACTGACGGCGTT
GGGCGACGCTCACAACGAAGTGATGGCGCAGTTGTACCGCTGTGATTACA
TTCGAGACCTGCAGTTTGTGGACGCAAACAGTTCTGCCGCTGTTTCGTCG
AGAGATGTGCCTTGCACGCCATTCTCGCTGTTATCATTTGTGCCTTGGTC
GTTTGGACGACGGCTGCGACGGTTGGTGGTGGTGAAACCCAGCCACGAAA
CGATACGCGCATTCGCCAACACATGGTGCTCACCTACTCACGTTGCGCTG
TTCCGAATGTCGCCCACGGTGATGCGGGACAGCACGACAGAACACCTGCC
GCGTCTGCTGCGACAAGCAAGCTCGTTCTCAATGAGCTTCCTCGAAGACT
TGCCGCTTGAACAGACGCACCACTTTGTGCAAAGGCTGAGGACGCGTCTA
TGGGCGATACGACGGCACCTGCCCGTGGTGCGACTGGTGGACAGAGCCGG
CGAGGCACGCTTCACAAGACTGCCGCGCGTGCGCTTCGTGCGCGATGAGA
AGGTGCGTCTGTCGGAATGGCTGACGGGGCTGGACGGGTTCCAACGGTTC
CCGCCGCCATCGGCATTCGACGCGACGATGCGCGAACGCATGCTGATGGA
GGTGGACACTTACCAGGCGGCGCAGACGCTGCTGCGAGACAACGTCAAGC
TGTGCTGCCCGCCAGagctgcagctgcaagcggcggagtggcgcacggta
agcggcaagccgcTGTTCATCCGAAACGACGTGGAAGGCATGACAGTGTT
CGCGGCCACGTTCAACGTGGCGCGGCAGATCGGCGCGTCCGAACTGATCC
TTTCCACGCGCATCGCAGCGTGCGCCGCGCACGTGGAGTCGTCGCTGCTG
CGATGTGAAGGCGTGCTGCAGCGGCTGACAGCGGCGCGCAGTCCGGGGTG
GACGCGCGGCGGCGGCGGCGACGGGGTGGCGGTGGGCGTAGTGGGCGACA
GCGCGGACTCGCAGTTCGTGCGCAGCGTGCCGGCGCTGCTGCGCGTGGCG
CGACTGACGGGGGCGCACACGGTGTGGATGGAGGACGCGCGGCTGCGCAT
CCGCGGGCGCGACATCAAGCAGCTGCTGCAGTGGATCGTGGCGGCGGCGC
AGGCGGCGCGCGGCGCGGAGGCGGCCGGGCTCAGCTGCGCGTCCGTGACG
GCGGTGCTGCTCAAGTGGCGCGCGCTGTGCTTCGACGACGCCATGCTGCT
GGCGCCGGTGTGA

protein sequence of Ggra10204.t1

>Ggra10204.t1 ID=Ggra10204.t1|Name=Ggra10204.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MDCLRPHRHHAVKALLDLPDELLLLIFARLCPSTTDYTEATVRRTRDALN
LARTCTRLKQLFAETTSVFAKQAHSLNLQHPAPPHALLCLPRTEIDTIRF
ILNKGRRSLRCVRLTALGDAHNEVMAQLYRCDYIRDLQFVDANSSAAVSS
RDVPCTPFSLLSFVPWSFGRRLRRLVVVKPSHETIRAFANTWCSPTHVAL
FRMSPTVMRDSTTEHLPRLLRQASSFSMSFLEDLPLEQTHHFVQRLRTRL
WAIRRHLPVVRLVDRAGEARFTRLPRVRFVRDEKVRLSEWLTGLDGFQRF
PPPSAFDATMRERMLMEVDTYQAAQTLLRDNVKLCCPPELQLQAAEWRTV
SGKPLFIRNDVEGMTVFAATFNVARQIGASELILSTRIAACAAHVESSLL
RCEGVLQRLTAARSPGWTRGGGGDGVAVGVVGDSADSQFVRSVPALLRVA
RLTGAHTVWMEDARLRIRGRDIKQLLQWIVAAAQAARGAEAAGLSCASVT
AVLLKWRALCFDDAMLLAPV*

mRNA from alignment at tig00000016_pilon:84816..86378+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10204.t1 ID=Ggra10204.t1|Name=Ggra10204.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000016_pilon:84816..86378+ (Gracilaria gracilis GNS1m male)
ATGGACTGCCTTCGCCCCCATCGACACCACGCCGTCAAAGCGCTGCTCGA
CCTGCCTGACGAACTGCTTTTGCTAATCTTTGCGCGTCTGTGCCCGTCCA
CAACAGACTATACCGAAGCAACGGTGAGGAGAACGCGGGACGCACTTAAC
CTTGCTCGCACATGCACGCGTCTGAAACAGTTGTTCGCTGAAACGACGTC
CGTGTTTGCAAAACAGGCGCATAGCCTCAACTTGCAGCACCCCGCTCCAC
CACATGCGTTGCTCTGCCTGCCCCGAACAGAGATTGACACCATAAGGTTC
ATCTTAAACAAAGGGCGACGTTCGCTGAGATGTGTGCGACTGACGGCGTT
GGGCGACGCTCACAACGAAGTGATGGCGCAGTTGTACCGCTGTGATTACA
TTCGAGACCTGCAGTTTGTGGACGCAAACAGTTCTGCCGCTGTTTCGTCG
AGAGATGTGCCTTGCACGCCATTCTCGCTGTTATCATTTGTGCCTTGGTC
GTTTGGACGACGGCTGCGACGGTTGGTGGTGGTGAAACCCAGCCACGAAA
CGATACGCGCATTCGCCAACACATGGTGCTCACCTACTCACGTTGCGCTG
TTCCGAATGTCGCCCACGGTGATGCGGGACAGCACGACAGAACACCTGCC
GCGTCTGCTGCGACAAGCAAGCTCGTTCTCAATGAGCTTCCTCGAAGACT
TGCCGCTTGAACAGACGCACCACTTTGTGCAAAGGCTGAGGACGCGTCTA
TGGGCGATACGACGGCACCTGCCCGTGGTGCGACTGGTGGACAGAGCCGG
CGAGGCACGCTTCACAAGACTGCCGCGCGTGCGCTTCGTGCGCGATGAGA
AGGTGCGTCTGTCGGAATGGCTGACGGGGCTGGACGGGTTCCAACGGTTC
CCGCCGCCATCGGCATTCGACGCGACGATGCGCGAACGCATGCTGATGGA
GGTGGACACTTACCAGGCGGCGCAGACGCTGCTGCGAGACAACGTCAAGC
TGTGCTGCCCGCCAGagctgcagctgcaagcggcggagtggcgcacggta
agcggcaagccgcTGTTCATCCGAAACGACGTGGAAGGCATGACAGTGTT
CGCGGCCACGTTCAACGTGGCGCGGCAGATCGGCGCGTCCGAACTGATCC
TTTCCACGCGCATCGCAGCGTGCGCCGCGCACGTGGAGTCGTCGCTGCTG
CGATGTGAAGGCGTGCTGCAGCGGCTGACAGCGGCGCGCAGTCCGGGGTG
GACGCGCGGCGGCGGCGGCGACGGGGTGGCGGTGGGCGTAGTGGGCGACA
GCGCGGACTCGCAGTTCGTGCGCAGCGTGCCGGCGCTGCTGCGCGTGGCG
CGACTGACGGGGGCGCACACGGTGTGGATGGAGGACGCGCGGCTGCGCAT
CCGCGGGCGCGACATCAAGCAGCTGCTGCAGTGGATCGTGGCGGCGGCGC
AGGCGGCGCGCGGCGCGGAGGCGGCCGGGCTCAGCTGCGCGTCCGTGACG
GCGGTGCTGCTCAAGTGGCGCGCGCTGTGCTTCGACGACGCCATGCTGCT
GGCGCCGGTGTGA

Coding sequence (CDS) from alignment at tig00000016_pilon:84816..86378+

>Ggra10204.t1 ID=Ggra10204.t1|Name=Ggra10204.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00000016_pilon:84816..86378+ (Gracilaria gracilis GNS1m male)
ATGGACTGCCTTCGCCCCCATCGACACCACGCCGTCAAAGCGCTGCTCGA
CCTGCCTGACGAACTGCTTTTGCTAATCTTTGCGCGTCTGTGCCCGTCCA
CAACAGACTATACCGAAGCAACGGTGAGGAGAACGCGGGACGCACTTAAC
CTTGCTCGCACATGCACGCGTCTGAAACAGTTGTTCGCTGAAACGACGTC
CGTGTTTGCAAAACAGGCGCATAGCCTCAACTTGCAGCACCCCGCTCCAC
CACATGCGTTGCTCTGCCTGCCCCGAACAGAGATTGACACCATAAGGTTC
ATCTTAAACAAAGGGCGACGTTCGCTGAGATGTGTGCGACTGACGGCGTT
GGGCGACGCTCACAACGAAGTGATGGCGCAGTTGTACCGCTGTGATTACA
TTCGAGACCTGCAGTTTGTGGACGCAAACAGTTCTGCCGCTGTTTCGTCG
AGAGATGTGCCTTGCACGCCATTCTCGCTGTTATCATTTGTGCCTTGGTC
GTTTGGACGACGGCTGCGACGGTTGGTGGTGGTGAAACCCAGCCACGAAA
CGATACGCGCATTCGCCAACACATGGTGCTCACCTACTCACGTTGCGCTG
TTCCGAATGTCGCCCACGGTGATGCGGGACAGCACGACAGAACACCTGCC
GCGTCTGCTGCGACAAGCAAGCTCGTTCTCAATGAGCTTCCTCGAAGACT
TGCCGCTTGAACAGACGCACCACTTTGTGCAAAGGCTGAGGACGCGTCTA
TGGGCGATACGACGGCACCTGCCCGTGGTGCGACTGGTGGACAGAGCCGG
CGAGGCACGCTTCACAAGACTGCCGCGCGTGCGCTTCGTGCGCGATGAGA
AGGTGCGTCTGTCGGAATGGCTGACGGGGCTGGACGGGTTCCAACGGTTC
CCGCCGCCATCGGCATTCGACGCGACGATGCGCGAACGCATGCTGATGGA
GGTGGACACTTACCAGGCGGCGCAGACGCTGCTGCGAGACAACGTCAAGC
TGTGCTGCCCGCCAGagctgcagctgcaagcggcggagtggcgcacggta
agcggcaagccgcTGTTCATCCGAAACGACGTGGAAGGCATGACAGTGTT
CGCGGCCACGTTCAACGTGGCGCGGCAGATCGGCGCGTCCGAACTGATCC
TTTCCACGCGCATCGCAGCGTGCGCCGCGCACGTGGAGTCGTCGCTGCTG
CGATGTGAAGGCGTGCTGCAGCGGCTGACAGCGGCGCGCAGTCCGGGGTG
GACGCGCGGCGGCGGCGGCGACGGGGTGGCGGTGGGCGTAGTGGGCGACA
GCGCGGACTCGCAGTTCGTGCGCAGCGTGCCGGCGCTGCTGCGCGTGGCG
CGACTGACGGGGGCGCACACGGTGTGGATGGAGGACGCGCGGCTGCGCAT
CCGCGGGCGCGACATCAAGCAGCTGCTGCAGTGGATCGTGGCGGCGGCGC
AGGCGGCGCGCGGCGCGGAGGCGGCCGGGCTCAGCTGCGCGTCCGTGACG
GCGGTGCTGCTCAAGTGGCGCGCGCTGTGCTTCGACGACGCCATGCTGCT
GGCGCCGGTGTGA