Ggra10184.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10184.t1
Unique NameGgra10184.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Homology
BLAST of Ggra10184.t1 vs. uniprot
Match: A0A2V3IJW7 (Copper transport protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJW7_9FLOR)

HSP 1 Score: 170 bits (431), Expect = 1.950e-50
Identity = 93/172 (54.07%), Postives = 115/172 (66.86%), Query Frame = 0
Query:   26 NMTANADASTPDMGXXXXXXXXXXXNATAGANAHNM----AAMGHQMSPFLFIRSTGFFVLFKEANIQSTGAFVAALILSFVFALLSTMISQVIRSMEERALSGGKSALKIITAFQHGLRVFLHYVAMLIVMTMNVWLIIAVVAGHALGWMVYALAVHRTLRGAANKPACDC 193
            +M +N  A++PD              A  GA  HNM      + HQMSPFLF R+TGFFVLFKEA+IQS+GAF  A +LSF FALL+T  SQ+IR +EERAL+ G +  K +    H +R+ LHY AMLIVMTMNVW+I+AVV GHA GWM+YA  +H  LR  + KPACDC
Sbjct:   34 HMDSNDTAASPDNSTAG--------TANQGAGMHNMPDHNVGVAHQMSPFLFTRTTGFFVLFKEADIQSSGAFAGAFLLSFAFALLATTSSQLIRYLEERALTKGGTVSKFLAGLHHAVRLLLHYAAMLIVMTMNVWIILAVVIGHAFGWMLYAFVLHPRLRTPSTKPACDC 197          
BLAST of Ggra10184.t1 vs. uniprot
Match: A0A7S0ZHJ6 (Copper transport protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHJ6_9RHOD)

HSP 1 Score: 93.6 bits (231), Expect = 1.600e-20
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 0
Query:   68 MSPFLFIRSTGFFVLFKEANIQSTGAFVAALILSFVFALLSTMISQVIRSMEERALSGGKSALKIITAFQHGLRVFLHYVAMLIVMTMNVWLIIAVVAGHALG---WMVYALAVHRTLRGAANKPACD 192
            MSPFLF    G+FVLF+ A I S GAF AAL+LSF+F  L+T+ +   +  +E  +S       IIT+  + +R  LHY AMLIVMTMNVWLIIAV+ GH  G   W VY    H+  R   ++   D
Sbjct:   41 MSPFLFTSKFGYFVLFQGAFISSNGAFTAALLLSFLFVTLTTLFTSYAKQYQECLVSQISLKRSIITSLLYTVRNALHYTAMLIVMTMNVWLIIAVLCGHFTGSFIWSVYCN--HKNSRTVVSRDDSD 166          
BLAST of Ggra10184.t1 vs. uniprot
Match: A0A1X6PHG3 (Copper transport protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PHG3_PORUM)

HSP 1 Score: 84.7 bits (208), Expect = 6.970e-17
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 0
Query:   68 MSPFLFIRSTGFFVLFKEANIQSTGAFVAALILSFVFALLSTMISQVIRSMEERALSGGKSALK--IITAFQHGLRVFLHYVAMLIVMTMNVWLIIAVVAGHALGWMVYAL 176
            MSPF   R+  FF LF  A + S GAF  ALI SFVFA+LST+  ++++ +E RA++   S +   ++      +R+ LHY+AML++MT NVW+ + VVAGH +G+ ++ L
Sbjct:   66 MSPFFTARAGEFFWLFSGARVDSDGAFAGALIGSFVFAVLSTIAMELLKRVERRAIASPASKVPQALLGGAAQAVRLSLHYLAMLLIMTFNVWVFLVVVAGHGVGYALFRL 176          
BLAST of Ggra10184.t1 vs. uniprot
Match: A0A1X6P488 (Copper transport protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P488_PORUM)

HSP 1 Score: 77.0 bits (188), Expect = 5.530e-14
Identity = 51/124 (41.13%), Postives = 68/124 (54.84%), Query Frame = 0
Query:   68 MSPFLFIRSTGFFVLFKEANIQSTGAFVAALILSFVFALLSTMISQVIRSMEERAL---SGGKSALKIITAFQ-HGLRVFLHYVAMLIVMTMNVWLIIAVVAGHALGWMVYALAVHRTLRGAAN 187
            MSPF   R+  FF LFK A ++S G F  A+I S  FA  +T+  +  + ME + L   SG             HG R+ LHY+AML++MT NVW+ +AVV GH +G+  Y LA     RG A 
Sbjct:   61 MSPFFTSRAGDFFWLFKGARVESGGEFAGAIIGSIAFAAFATLGVEAAKKMERQMLGRHSGXXXXXXXXXXXXAHGFRLALHYLAMLLIMTFNVWVFLAVVVGHGIGYATYRLAGGMLGRGQAT 184          
BLAST of Ggra10184.t1 vs. uniprot
Match: A0A5J4YWM8 (Copper transport protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWM8_PORPP)

HSP 1 Score: 74.7 bits (182), Expect = 6.160e-13
Identity = 52/135 (38.52%), Postives = 71/135 (52.59%), Query Frame = 0
Query:   63 AMGHQ-MSPFLFIRSTGFFVLFKEANIQSTGAFVAALILSFVFALLSTMISQVIRSMEERALS-------GGKSALKIITAFQHGLRVFLHYVAMLIVMTMNVWLIIAVVAGHALGWMVYAL-AVHRTLRGAANK 188
            +M H+ MSPFLF  +TGF+++F+EA I S   F  A   S  FA   T  S   R  E R +        G +     + A +HG     HY AML++M+MNV +I++VV GH LGW+ + L A H  L     K
Sbjct:   29 SMAHEGMSPFLFTSTTGFYLIFEEAYITSAAGFAGAFFASMFFAWFVTWFSAASRVWERRVVDSRRLRSPGPELVSAALLALRHGG----HYFAMLLIMSMNVGIIVSVVLGHGLGWLSWQLLAPHGKLNALLGK 159          
BLAST of Ggra10184.t1 vs. uniprot
Match: A0A7S2SVW8 (Copper transport protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVW8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.960e-9
Identity = 36/111 (32.43%), Postives = 63/111 (56.76%), Query Frame = 0
Query:   63 AMGHQMSPFLFIRSTGFFVLFKEANIQSTGAFVAALILSFVFALLSTMISQVIRSMEERALSGGKSALKIITAFQHGLRVFLHYVAMLIVMTMNVWLIIAVVAGHALGWMV 173
            +MGH M  + F ++  FFV+FK+A I +   ++ A IL+F+F   ++ +    + +E +       A  +      GLR+ +HY+AML+ MT NV + + + AGH  G++V
Sbjct:   26 SMGHSM--YFFTKTKDFFVVFKDAEITNQREYILACILAFLFGAFASWVVSETKRVEGKGFKEPWGAWSVAGMVAMGLRLAVHYLAMLVAMTYNVGIFVVLCAGHGFGYLV 134          
The following BLAST results are available for this feature:
BLAST of Ggra10184.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IJW71.950e-5054.07Copper transport protein n=1 Tax=Gracilariopsis ch... [more]
A0A7S0ZHJ61.600e-2046.88Copper transport protein (Fragment) n=1 Tax=Timspu... [more]
A0A1X6PHG36.970e-1743.24Copper transport protein n=1 Tax=Porphyra umbilica... [more]
A0A1X6P4885.530e-1441.13Copper transport protein n=1 Tax=Porphyra umbilica... [more]
A0A5J4YWM86.160e-1338.52Copper transport protein n=1 Tax=Porphyridium purp... [more]
A0A7S2SVW86.960e-932.43Copper transport protein n=1 Tax=Rhizochromulina m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007274Ctr copper transporterPFAMPF04145Ctrcoord: 130..172
e-value: 4.2E-10
score: 40.4
IPR007274Ctr copper transporterPANTHERPTHR12483SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERScoord: 52..181
NoneNo IPR availablePANTHERPTHR12483:SF24COPPER TRANSPORTER 1coord: 52..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..111
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 179..193
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 157..178
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..91
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 152..156
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 112..131
NoneNo IPR availableTMHMMTMhelixcoord: 156..178
NoneNo IPR availableTMHMMTMhelixcoord: 93..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:36535..37116 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10184.t1Ggra10184.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 36535..37116 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10184.t1 ID=Ggra10184.t1|Name=Ggra10184.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MDMDNDMNAGSDMDDMGGGGAAADMNMTANADASTPDMGDMGDMGDMGST
NATAGANAHNMAAMGHQMSPFLFIRSTGFFVLFKEANIQSTGAFVAALIL
SFVFALLSTMISQVIRSMEERALSGGKSALKIITAFQHGLRVFLHYVAML
IVMTMNVWLIIAVVAGHALGWMVYALAVHRTLRGAANKPACDC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter