Ggra10184.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10184.t1
Unique NameGgra10184.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:36535..37116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981085.XP_010087879.1
PFAMsCtr
Max annot lvl35493|Streptophyta
KEGG koko:K14686
KEGG TC1.A.56.1
KEGG Pathwayko01524,ko04978,map01524,map04978
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue2.84e-07
EggNOG OGsKOG3386@1|root,KOG3386@2759|Eukaryota,37VSX@33090|Viridiplantae,3GJRW@35493|Streptophyta,4JUKM@91835|fabids
DescriptionCtr copper transporter family
COG categoryP
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10184Ggra10184Gracilaria gracilis GNS1m malegenetig00000016_pilon 36535..37116 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10184.t1.start1Ggra10184.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 36535..36537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10184.t1.CDS1Ggra10184.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 36535..37116 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10184.t1.exon1Ggra10184.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 36535..37116 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10184.t1.stop1Ggra10184.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 37114..37116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10184.t1Ggra10184.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 36535..37116 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10184.t1 ID=Ggra10184.t1|Name=Ggra10184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=194bp
MDMDNDMNAGSDMDDMGGGGAAADMNMTANADASTPDMGDMGDMGDMGST
NATAGANAHNMAAMGHQMSPFLFIRSTGFFVLFKEANIQSTGAFVAALIL
SFVFALLSTMISQVIRSMEERALSGGKSALKIITAFQHGLRVFLHYVAML
IVMTMNVWLIIAVVAGHALGWMVYALAVHRTLRGAANKPACDC*
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spliced messenger RNA

>Ggra10184.t1 ID=Ggra10184.t1|Name=Ggra10184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000016_pilon:36535..37116+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATGGACAACGACATGAACGCTGGCTCCGACATGGACGATATGGG
CGGCGGTGGCGCTGCAGCCGACATGAACATGACCGCCAACGCCGACGCCA
GCACGCCcgacatgggcgacatgggcgatatgggcgacatgggcAGCACA
AACGCCACCGCCGGCGCCAACGCCCACAACATGGCCGCCATGGGCCATCA
GATGAGCCCGTTTCTGTTCATTCGCTCCACCGGCTTTTTCGTGCTGTTCA
AGGAAGCCAACATCCAGTCTACGGGCGCCTTTGTGGCCGCCTTGATCCTG
TCCTTTGTGTTTGCGCTTCTTTCCACCATGATCTCGCAGGTCATTCGCAG
CATGGAGGAGCGCGCCCTGTCCGGCGGAAAGTCCGCCCTCAAGATCATCA
CCGCCTTTCAGCACGGCTTGCGAGTCTTCTTGCACTATGTCGCCATGCTC
ATCGTCATGACCATGAACGTCTGGCTCATCATTGCCGTCGTCGCCGGTCA
TGCTTTGGGCTGGATGGTCTATGCGCTTGCTGTGCATAGGACTTTGAGGG
GTGCCGCTAACAAACCGGCCTGTGATTGCTAA
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protein sequence of Ggra10184.t1

>Ggra10184.t1 ID=Ggra10184.t1|Name=Ggra10184.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MDMDNDMNAGSDMDDMGGGGAAADMNMTANADASTPDMGDMGDMGDMGST
NATAGANAHNMAAMGHQMSPFLFIRSTGFFVLFKEANIQSTGAFVAALIL
SFVFALLSTMISQVIRSMEERALSGGKSALKIITAFQHGLRVFLHYVAML
IVMTMNVWLIIAVVAGHALGWMVYALAVHRTLRGAANKPACDC*
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mRNA from alignment at tig00000016_pilon:36535..37116+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10184.t1 ID=Ggra10184.t1|Name=Ggra10184.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000016_pilon:36535..37116+ (Gracilaria gracilis GNS1m male)
ATGGACATGGACAACGACATGAACGCTGGCTCCGACATGGACGATATGGG
CGGCGGTGGCGCTGCAGCCGACATGAACATGACCGCCAACGCCGACGCCA
GCACGCCcgacatgggcgacatgggcgatatgggcgacatgggcAGCACA
AACGCCACCGCCGGCGCCAACGCCCACAACATGGCCGCCATGGGCCATCA
GATGAGCCCGTTTCTGTTCATTCGCTCCACCGGCTTTTTCGTGCTGTTCA
AGGAAGCCAACATCCAGTCTACGGGCGCCTTTGTGGCCGCCTTGATCCTG
TCCTTTGTGTTTGCGCTTCTTTCCACCATGATCTCGCAGGTCATTCGCAG
CATGGAGGAGCGCGCCCTGTCCGGCGGAAAGTCCGCCCTCAAGATCATCA
CCGCCTTTCAGCACGGCTTGCGAGTCTTCTTGCACTATGTCGCCATGCTC
ATCGTCATGACCATGAACGTCTGGCTCATCATTGCCGTCGTCGCCGGTCA
TGCTTTGGGCTGGATGGTCTATGCGCTTGCTGTGCATAGGACTTTGAGGG
GTGCCGCTAACAAACCGGCCTGTGATTGCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:36535..37116+

>Ggra10184.t1 ID=Ggra10184.t1|Name=Ggra10184.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000016_pilon:36535..37116+ (Gracilaria gracilis GNS1m male)
ATGGACATGGACAACGACATGAACGCTGGCTCCGACATGGACGATATGGG
CGGCGGTGGCGCTGCAGCCGACATGAACATGACCGCCAACGCCGACGCCA
GCACGCCcgacatgggcgacatgggcgatatgggcgacatgggcAGCACA
AACGCCACCGCCGGCGCCAACGCCCACAACATGGCCGCCATGGGCCATCA
GATGAGCCCGTTTCTGTTCATTCGCTCCACCGGCTTTTTCGTGCTGTTCA
AGGAAGCCAACATCCAGTCTACGGGCGCCTTTGTGGCCGCCTTGATCCTG
TCCTTTGTGTTTGCGCTTCTTTCCACCATGATCTCGCAGGTCATTCGCAG
CATGGAGGAGCGCGCCCTGTCCGGCGGAAAGTCCGCCCTCAAGATCATCA
CCGCCTTTCAGCACGGCTTGCGAGTCTTCTTGCACTATGTCGCCATGCTC
ATCGTCATGACCATGAACGTCTGGCTCATCATTGCCGTCGTCGCCGGTCA
TGCTTTGGGCTGGATGGTCTATGCGCTTGCTGTGCATAGGACTTTGAGGG
GTGCCGCTAACAAACCGGCCTGTGATTGCTAA
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