Ggra1014.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1014.t1
Unique NameGgra1014.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length546
Homology
BLAST of Ggra1014.t1 vs. uniprot
Match: A0A2V3IIK4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIK4_9FLOR)

HSP 1 Score: 471 bits (1212), Expect = 4.790e-159
Identity = 244/488 (50.00%), Postives = 333/488 (68.24%), Query Frame = 0
Query:   55 MDDIILNIDPSVWNVLKFVILTIITTPVLELMFQRLINTKATYDVLLGKKLLLCDSQLGLFSLHATHWGSRKNRYLLLLIGIPILTAELLFEFSFSVDTVDVPAEQRVWLPPSHKAHYTVSESQKLGSSLIEPTQFPIEATDSCIQGPSEMIRSGSATQTVDEYLSGFEYHMEGEYVIRKPYLALDNSSILCSKAKTAGPVNFVVPHVVMVKGSTKAEGLYAQRNTTDSESLRRAFTNGSFEYVGRLDTAYFSGAVRENGQAVCIRPRDHG--FHCALYFENSFILTNSSLFWTKAAFENFTMSVVLKATGAPIEGLKNRERRIRLLATLLGSELLRPRLGGRTPSQLLIGKDKLERIALLTLVVANEEGVGGFREQVGIRSLLKEEKQTATMKRIAFIPIGVLLFFMFVFIIGDGVLSLLIIYTSSYKVAKVSSWNKFPHRVRTSIQWLRGRICDDLLHDGTFEDITSEDISLKATPEIFQMLPKMP 540
            M DI+LN+DPS WNVLKF+ILTIITTP+LE + QR INTKATYDV+ G+ +   +S LG+ SLH+ +WG R+N   LLL+   +  +EL+FEFSFS   +D+   + VWLPPSH  HYT S     G    EP QFP+ A ++CI+G SEM R+G + +   E++SGFEYHME  YVIRKPYLALDNSS+LCS + T G V+F VPHV +V  ST AEG+ A +NT++SE++R++ T+G+F+  G ++       V  +  AVCIR R     F CA+Y  N+FIL  +S  W+    +   +SVVL ATG P+EG+++R R++R LAT+ G+ LL   + GR PS  L+ KDK E +ALL LVVANEEGVGG R ++G RS +  + QTATMKR+AF+PI +L+ F+   ++ +  LS LI  ++ ++  K+    +   R  TSIQWLR RIC+DLLHDG F +I+S+++SLK      QMLPK+P
Sbjct:    1 MQDIVLNLDPSTWNVLKFIILTIITTPLLEFLLQRFINTKATYDVMRGEHVQFAESNLGVLSLHSVYWGRRRNSIYLLLVASLVFASELIFEFSFSAQALDIAEPREVWLPPSHAEHYTFSRRSLDGPERREPFQFPVLAAETCIKGESEMRRTGRSNEADGEFISGFEYHMEDTYVIRKPYLALDNSSVLCSVSTTIGRVSFFVPHVYLVNSSTGAEGVLALKNTSNSENVRQSLTSGTFDSYGFVNDVQ----VVASDNAVCIRSRSRSKTFLCAMYVMNAFILARTSEIWSDRVPDKTLLSVVLNATGQPVEGMRSRTRKLRYLATVSGNALLNTFVEGRRPSHQLVTKDKTETLALLVLVVANEEGVGGSRNKIGKRSFVIGQAQTATMKRLAFVPIAILVSFLVFLLVVEVTLSKLIASSTKHQGRKIWGCTRAGSRADTSIQWLRERICEDLLHDGVFRNISSKELSLKIVSGELQMLPKVP 484          
BLAST of Ggra1014.t1 vs. uniprot
Match: A0A2V3ITH0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH0_9FLOR)

HSP 1 Score: 199 bits (507), Expect = 4.700e-54
Identity = 163/513 (31.77%), Postives = 251/513 (48.93%), Query Frame = 0
Query:   55 MDDIILNIDPSVWNVLKFVILTIITTPVLELMFQRLINTKATYDVLLGKKLLLCDSQLGLFSLHATHWGSRKNRYLLLLIGIPILTAELLFEFSFSVDTVDVPAEQRVWLPPSHKAHYTVSESQKLGSSLIEPTQFPIEAT--DSCIQGPSEMIRSGSATQTVDEYLSGF-EYHMEGEYVIRKPYL-ALDNSSILCSKAKTAGPVNFVVPHVV-MVKGSTKAEGL----------YAQRNTTDSESLRRAFTNGSFEYVGRLDTAYFSGAVRENGQ-AVCIRPRDHGFH------CALYFENSFILTNSSLFWTKAAFENFTMSVVLKATGAPIEG--LKNRERRIRLLATLLGSELLRPRLGGRTPSQLLIGKDKLERIALLTLVVANEEGVGGFREQVGIRSLLKEEKQTATMKRIAFIPIGVLLFFMFVFIIGDGVLSLLIIYTSSYKVAKVSSWNKFPHRVRTSIQWLRGRICDDLLHDGTFEDITSE---DISLKATPEIFQMLPKMP 540
            M+++ LN+ PSVWN++K+V L++I TP  E +  RL   KA +D+L G+ + L D++LG+FSLH+T WG  +NRYLLL+IG  ++  ELLFEFSFS   V     ++VW  P H+  Y +S  +     + EP   P+EA   + C++G   M R     +T DE+     EY + G Y +R+PYL A DN+++ CS        +F VP    +V    + EG           Y +    D +   R   N + +     DT  +      NG+ ++CI  +           C L  +++F L   SL       E  ++S ++     P  G  +    R+IR L + L   L+  R      S+L   K  LE+I  + L+VANEEGV G R     R +L   ++ A++KR+A IP G L+  M +  I   VL  + I  +  K  +        H VR S Q+LR ++ +DLL      +   E    +   A  +  Q+LP++P
Sbjct:    1 MEELSLNVSPSVWNIIKYVTLSLIITPTFEFLLHRLSQQKARWDILRGRTVALSDTRLGIFSLHSTFWGRSRNRYLLLVIGTFVIAIELLFEFSFSSKLVAKSKTEQVWSQPDHQQRYLISSEEV--HFMREPALLPVEAANIEGCVEGEFNMRRK---EKTKDEFQQTIMEYSINGMYTVRRPYLSATDNATLYCSADHIEKKASFFVPFATKVVYDDVEEEGFDYFGAFEDKFYNRSIYADVDMKLRFKANLTID-----DTKLYMF----NGKNSICIGSKSLAVFGTAYLLCGLRAQSAFSLAVGSLHEDD---ERVSISTIVMEMSGPALGPLVDQAGRQIRFLLSNLFLNLVWHRPASEGASKL--RKTTLEQIVQIALIVANEEGVAGIRRVKASREVLDGVQERASVKRLAIIP-GALIGGMLLLFISMNVLLAICIAKAQRKTGQ--------HSVRISTQFLRKQLRNDLLGMRAAHNEWQEIGYKLVQDADEQRLQLLPQLP 485          
BLAST of Ggra1014.t1 vs. uniprot
Match: A0A2V3IIJ0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIJ0_9FLOR)

HSP 1 Score: 136 bits (343), Expect = 4.900e-31
Identity = 119/390 (30.51%), Postives = 185/390 (47.44%), Query Frame = 0
Query:   58 IILNIDPSVWNVLKFVILTIITTPVLELMFQRLINTKATYDVLLGKKLLLCDSQLGLFSLHATHWGSRKNRYLLLLIGIPILTAELLFEFSFSVDTVDVPAEQRVWLPPSHKAHYTVSESQKLGSSLIEPTQFPIEATDSCIQGPSEMIRSG--SATQTVDEYLSGF-EYHMEGEYVIRKPYLALDNSSILCSKAKTAGPVNFVVPHVVMVKGSTKAEGLYAQRNTT---DSESLR----RAFTN-GSFEYVGRLDTAYFSGAVRENGQAVCIRPRDHGFHCALYFEN------SFILTNSSLFWTKAAFENFTMSVVLKATGAPIEGLK-NRERRIRLLATLLGSELLRPRLGGRTPSQLLIGKDKLERIALLTLVVANEEGVGGFREQ 429
            ++LN+ PSVWNVLK+ + T++ TP  E+M   L+ + AT  V  G +L L DSQLG+F+LH+ + G R+ R  L+L    ++  EL  E SFS   V V   + VW+ P+H   Y   E+  +     EPT+     +  CI GP  M R     AT TV E      +Y +   + +R  Y+  ++S + C         +   P++V   G    EG ++  +     DSE  +     +FT  G+F + G    AY SG      +A C+   D G   A   ++        +  NS++  T  A  N    V L   G  +E L  +  R++RLLA +  + +L P  G     + ++ K  LER+A+  L+V+ E  V G  E+
Sbjct:    5 LLLNLSPSVWNVLKWALFTLVITPAFEIMTASLMASSATARVQAGAQLELFDSQLGIFALHSRYAGKRRTRLWLVLGTAVLMALELWLEMSFSAAEVVVTVSEEVWVGPNHDERYMRRENFSIND---EPTRLLETMSRQCIAGPRAMKRDSVQRATVTVLEEAEVIAQYSLTANWTVRAAYVREEDSLVACDAVAETKWASVEAPNIVSQYG---VEGFHSDCDPALGLDSEWFQTLHNESFTQRGAFVFEGERARAY-SGT-----RATCVEL-DAGVDRAEDIDDVPLRLVCALQLNSTVAITLTAGLNIARCVALLLHGPGVETLAGSHARQLRLLAFVAETRILWP--GWSNTLKGMVQKRSLERVAMAALMVSGERAVSGVAER 379          
The following BLAST results are available for this feature:
BLAST of Ggra1014.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IIK44.790e-15950.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITH04.700e-5431.77Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IIJ04.900e-3130.51Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 449..476
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 88..128
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 477..545
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 152..448
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..68
NoneNo IPR availableTMHMMTMhelixcoord: 453..475

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:533907..535544 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1014.t1Ggra1014.t1Gracilaria gracilis GNS1m malemRNAtig00000027_pilon 533907..535544 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1014.t1 ID=Ggra1014.t1|Name=Ggra1014.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MCLHEISLVPCHVPAAPQSRAFTSTVASLELQTPDRFQSQNQESDVPTKH
CDSEMDDIILNIDPSVWNVLKFVILTIITTPVLELMFQRLINTKATYDVL
LGKKLLLCDSQLGLFSLHATHWGSRKNRYLLLLIGIPILTAELLFEFSFS
VDTVDVPAEQRVWLPPSHKAHYTVSESQKLGSSLIEPTQFPIEATDSCIQ
GPSEMIRSGSATQTVDEYLSGFEYHMEGEYVIRKPYLALDNSSILCSKAK
TAGPVNFVVPHVVMVKGSTKAEGLYAQRNTTDSESLRRAFTNGSFEYVGR
LDTAYFSGAVRENGQAVCIRPRDHGFHCALYFENSFILTNSSLFWTKAAF
ENFTMSVVLKATGAPIEGLKNRERRIRLLATLLGSELLRPRLGGRTPSQL
LIGKDKLERIALLTLVVANEEGVGGFREQVGIRSLLKEEKQTATMKRIAF
IPIGVLLFFMFVFIIGDGVLSLLIIYTSSYKVAKVSSWNKFPHRVRTSIQ
WLRGRICDDLLHDGTFEDITSEDISLKATPEIFQMLPKMPYSHQQ*
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