Ggra1014.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1014.t1
Unique Name	Ggra1014.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:533907..535544 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1014	Ggra1014	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 533907..535544 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1014.t1.stop1	Ggra1014.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 533907..533909 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1014.t1.CDS1	Ggra1014.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 533907..535544 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1014.t1.exon1	Ggra1014.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 533907..535544 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1014.t1.start1	Ggra1014.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 535542..535544 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1014.t1	Ggra1014.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 533907..535544 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:533907..535544-
coding sequence from alignment at tig00000027_pilon:533907..535544-

mRNA sequence

>Ggra1014.t1 ID=Ggra1014.t1|Name=Ggra1014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MCLHEISLVPCHVPAAPQSRAFTSTVASLELQTPDRFQSQNQESDVPTKH
CDSEMDDIILNIDPSVWNVLKFVILTIITTPVLELMFQRLINTKATYDVL
LGKKLLLCDSQLGLFSLHATHWGSRKNRYLLLLIGIPILTAELLFEFSFS
VDTVDVPAEQRVWLPPSHKAHYTVSESQKLGSSLIEPTQFPIEATDSCIQ
GPSEMIRSGSATQTVDEYLSGFEYHMEGEYVIRKPYLALDNSSILCSKAK
TAGPVNFVVPHVVMVKGSTKAEGLYAQRNTTDSESLRRAFTNGSFEYVGR
LDTAYFSGAVRENGQAVCIRPRDHGFHCALYFENSFILTNSSLFWTKAAF
ENFTMSVVLKATGAPIEGLKNRERRIRLLATLLGSELLRPRLGGRTPSQL
LIGKDKLERIALLTLVVANEEGVGGFREQVGIRSLLKEEKQTATMKRIAF
IPIGVLLFFMFVFIIGDGVLSLLIIYTSSYKVAKVSSWNKFPHRVRTSIQ
WLRGRICDDLLHDGTFEDITSEDISLKATPEIFQMLPKMPYSHQQ*

spliced messenger RNA

>Ggra1014.t1 ID=Ggra1014.t1|Name=Ggra1014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000027_pilon:533907..535544- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTTGCATGAAATATCGCTAGTCCCGTGCCATGTTCCCGCAGCTCC
ACAGTCCAGAGCATTCACTTCAACAGTTGCTTCTCTGGAGCTGCAGACAC
CGGATCGATTTCAATCCCAAAACCAGGAGTCCGACGTACCCACGAAGCAC
TGTGATTCCGAAATGGACGACATCATCCTCAACATAGACCCATCCGTTTG
GAATGTCCTCAAATTCGTCATTCTTACCATAATAACCACCCCAGTTCTTG
AATTAATGTTTCAGCGCCTCATCAATACCAAAGCAACCTACGATGTGTTA
CTTGGAAAGAAGCTCCTTCTCTGCGACTCACAATTGGGTCTTTTCTCTCT
TCACGCTACGCACTGGGGCTCGCGCAAGAACAGGTATCTGCTGCTTCTCA
TAGGCATTCCAATTCTGACAGCGGAGCTTCTGTTTGAGTTTTCGTTCTCT
GTTGACACTGTCGATGTTCCAGCTGAACAACGCGTTTGGCTTCCACCGTC
ACACAAGGCACACTACACTGTTTCAGAAAGTCAGAAATTGGGCAGCTCCC
TGATCGAGCCTACTCAGTTCCCAATAGAAGCAACGGATTCATGCATCCAA
GGACCATCTGAAATGATAAGAAGTGGGAGTGCCACCCAAACCGTCGATGA
ATACTTATCAGGATTTGAATACCACATGGAAGGTGAATATGTGATTCGCA
AACCATATCTCGCTTTGGACAATAGCTCAATCCTATGCAGCAAGGCCAAA
ACTGCGGGGCCAGTGAACTTTGTTGTCCCGCACGTTGTCATGGTTAAGGG
TTCCACCAAGGCTGAAGGTTTATATGCGCAAAGAAACACTACTGACTCGG
AAAGCTTACGCAGAGCGTTTACAAATGGCTCATTTGAATATGTTGGCAGG
TTAGATACCGCCTATTTTTCGGGCGCCGTCAGGGAGAATGGCCAAGCGGT
TTGCATTAGACCCAGGGACCATGGTTTTCACTGTGCATTATACTTCGAGA
ACTCGTTCATACTGACAAACTCGTCGCTTTTCTGGACCAAGGCAGCTTTT
GAAAACTTCACAATGTCAGTCGTTTTGAAGGCAACTGGAGCTCCGATCGA
AGGACTGAAGAACCGCGAGCGAAGAATACGACTCCTTGCGACTCTGCTTG
GAAGCGAACTTCTTCGCCCTCGCCTTGGAGGCAGAACCCCATCGCAGCTC
TTAATTGGCAAGGACAAGCTTGAGAGAATTGCCCTTCTGACATTGGTTGT
AGCCAACGAAGAGGGGGTGGGTGGCTTTCGAGAGCAAGTTGGAATTCGGT
CCCTTCTGAAGGAAGAGAAGCAGACGGCAACCATGAAACGCATTGCCTTC
ATTCCAATTGGTGTTTTATTGTTTTTCATGTTTGTATTTATTATTGGCGA
TGGTGTACTCTCGTTGCTGATAATATATACTTCATCTTATAAGGTCGCCA
AGGTATCGAGCTGGAATAAATTTCCACATCGAGTGAGAACTTCAATTCAG
TGGCTCCGGGGGAGAATTTGTGACGACTTACTGCACGATGGGACATTCGA
AGACATAACAAGCGAAGATATTTCTTTGAAGGCGACCCCTGAAATCTTTC
AGATGCTCCCGAAAATGCCGTATTCCCACCAGCAGTGA

protein sequence of Ggra1014.t1

>Ggra1014.t1 ID=Ggra1014.t1|Name=Ggra1014.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MCLHEISLVPCHVPAAPQSRAFTSTVASLELQTPDRFQSQNQESDVPTKH
CDSEMDDIILNIDPSVWNVLKFVILTIITTPVLELMFQRLINTKATYDVL
LGKKLLLCDSQLGLFSLHATHWGSRKNRYLLLLIGIPILTAELLFEFSFS
VDTVDVPAEQRVWLPPSHKAHYTVSESQKLGSSLIEPTQFPIEATDSCIQ
GPSEMIRSGSATQTVDEYLSGFEYHMEGEYVIRKPYLALDNSSILCSKAK
TAGPVNFVVPHVVMVKGSTKAEGLYAQRNTTDSESLRRAFTNGSFEYVGR
LDTAYFSGAVRENGQAVCIRPRDHGFHCALYFENSFILTNSSLFWTKAAF
ENFTMSVVLKATGAPIEGLKNRERRIRLLATLLGSELLRPRLGGRTPSQL
LIGKDKLERIALLTLVVANEEGVGGFREQVGIRSLLKEEKQTATMKRIAF
IPIGVLLFFMFVFIIGDGVLSLLIIYTSSYKVAKVSSWNKFPHRVRTSIQ
WLRGRICDDLLHDGTFEDITSEDISLKATPEIFQMLPKMPYSHQQ*

mRNA from alignment at tig00000027_pilon:533907..535544-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1014.t1 ID=Ggra1014.t1|Name=Ggra1014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000027_pilon:533907..535544- (Gracilaria gracilis GNS1m male)
ATGTGCTTGCATGAAATATCGCTAGTCCCGTGCCATGTTCCCGCAGCTCC
ACAGTCCAGAGCATTCACTTCAACAGTTGCTTCTCTGGAGCTGCAGACAC
CGGATCGATTTCAATCCCAAAACCAGGAGTCCGACGTACCCACGAAGCAC
TGTGATTCCGAAATGGACGACATCATCCTCAACATAGACCCATCCGTTTG
GAATGTCCTCAAATTCGTCATTCTTACCATAATAACCACCCCAGTTCTTG
AATTAATGTTTCAGCGCCTCATCAATACCAAAGCAACCTACGATGTGTTA
CTTGGAAAGAAGCTCCTTCTCTGCGACTCACAATTGGGTCTTTTCTCTCT
TCACGCTACGCACTGGGGCTCGCGCAAGAACAGGTATCTGCTGCTTCTCA
TAGGCATTCCAATTCTGACAGCGGAGCTTCTGTTTGAGTTTTCGTTCTCT
GTTGACACTGTCGATGTTCCAGCTGAACAACGCGTTTGGCTTCCACCGTC
ACACAAGGCACACTACACTGTTTCAGAAAGTCAGAAATTGGGCAGCTCCC
TGATCGAGCCTACTCAGTTCCCAATAGAAGCAACGGATTCATGCATCCAA
GGACCATCTGAAATGATAAGAAGTGGGAGTGCCACCCAAACCGTCGATGA
ATACTTATCAGGATTTGAATACCACATGGAAGGTGAATATGTGATTCGCA
AACCATATCTCGCTTTGGACAATAGCTCAATCCTATGCAGCAAGGCCAAA
ACTGCGGGGCCAGTGAACTTTGTTGTCCCGCACGTTGTCATGGTTAAGGG
TTCCACCAAGGCTGAAGGTTTATATGCGCAAAGAAACACTACTGACTCGG
AAAGCTTACGCAGAGCGTTTACAAATGGCTCATTTGAATATGTTGGCAGG
TTAGATACCGCCTATTTTTCGGGCGCCGTCAGGGAGAATGGCCAAGCGGT
TTGCATTAGACCCAGGGACCATGGTTTTCACTGTGCATTATACTTCGAGA
ACTCGTTCATACTGACAAACTCGTCGCTTTTCTGGACCAAGGCAGCTTTT
GAAAACTTCACAATGTCAGTCGTTTTGAAGGCAACTGGAGCTCCGATCGA
AGGACTGAAGAACCGCGAGCGAAGAATACGACTCCTTGCGACTCTGCTTG
GAAGCGAACTTCTTCGCCCTCGCCTTGGAGGCAGAACCCCATCGCAGCTC
TTAATTGGCAAGGACAAGCTTGAGAGAATTGCCCTTCTGACATTGGTTGT
AGCCAACGAAGAGGGGGTGGGTGGCTTTCGAGAGCAAGTTGGAATTCGGT
CCCTTCTGAAGGAAGAGAAGCAGACGGCAACCATGAAACGCATTGCCTTC
ATTCCAATTGGTGTTTTATTGTTTTTCATGTTTGTATTTATTATTGGCGA
TGGTGTACTCTCGTTGCTGATAATATATACTTCATCTTATAAGGTCGCCA
AGGTATCGAGCTGGAATAAATTTCCACATCGAGTGAGAACTTCAATTCAG
TGGCTCCGGGGGAGAATTTGTGACGACTTACTGCACGATGGGACATTCGA
AGACATAACAAGCGAAGATATTTCTTTGAAGGCGACCCCTGAAATCTTTC
AGATGCTCCCGAAAATGCCGTATTCCCACCAGCAGTGA

Coding sequence (CDS) from alignment at tig00000027_pilon:533907..535544-

>Ggra1014.t1 ID=Ggra1014.t1|Name=Ggra1014.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000027_pilon:533907..535544- (Gracilaria gracilis GNS1m male)
ATGTGCTTGCATGAAATATCGCTAGTCCCGTGCCATGTTCCCGCAGCTCC
ACAGTCCAGAGCATTCACTTCAACAGTTGCTTCTCTGGAGCTGCAGACAC
CGGATCGATTTCAATCCCAAAACCAGGAGTCCGACGTACCCACGAAGCAC
TGTGATTCCGAAATGGACGACATCATCCTCAACATAGACCCATCCGTTTG
GAATGTCCTCAAATTCGTCATTCTTACCATAATAACCACCCCAGTTCTTG
AATTAATGTTTCAGCGCCTCATCAATACCAAAGCAACCTACGATGTGTTA
CTTGGAAAGAAGCTCCTTCTCTGCGACTCACAATTGGGTCTTTTCTCTCT
TCACGCTACGCACTGGGGCTCGCGCAAGAACAGGTATCTGCTGCTTCTCA
TAGGCATTCCAATTCTGACAGCGGAGCTTCTGTTTGAGTTTTCGTTCTCT
GTTGACACTGTCGATGTTCCAGCTGAACAACGCGTTTGGCTTCCACCGTC
ACACAAGGCACACTACACTGTTTCAGAAAGTCAGAAATTGGGCAGCTCCC
TGATCGAGCCTACTCAGTTCCCAATAGAAGCAACGGATTCATGCATCCAA
GGACCATCTGAAATGATAAGAAGTGGGAGTGCCACCCAAACCGTCGATGA
ATACTTATCAGGATTTGAATACCACATGGAAGGTGAATATGTGATTCGCA
AACCATATCTCGCTTTGGACAATAGCTCAATCCTATGCAGCAAGGCCAAA
ACTGCGGGGCCAGTGAACTTTGTTGTCCCGCACGTTGTCATGGTTAAGGG
TTCCACCAAGGCTGAAGGTTTATATGCGCAAAGAAACACTACTGACTCGG
AAAGCTTACGCAGAGCGTTTACAAATGGCTCATTTGAATATGTTGGCAGG
TTAGATACCGCCTATTTTTCGGGCGCCGTCAGGGAGAATGGCCAAGCGGT
TTGCATTAGACCCAGGGACCATGGTTTTCACTGTGCATTATACTTCGAGA
ACTCGTTCATACTGACAAACTCGTCGCTTTTCTGGACCAAGGCAGCTTTT
GAAAACTTCACAATGTCAGTCGTTTTGAAGGCAACTGGAGCTCCGATCGA
AGGACTGAAGAACCGCGAGCGAAGAATACGACTCCTTGCGACTCTGCTTG
GAAGCGAACTTCTTCGCCCTCGCCTTGGAGGCAGAACCCCATCGCAGCTC
TTAATTGGCAAGGACAAGCTTGAGAGAATTGCCCTTCTGACATTGGTTGT
AGCCAACGAAGAGGGGGTGGGTGGCTTTCGAGAGCAAGTTGGAATTCGGT
CCCTTCTGAAGGAAGAGAAGCAGACGGCAACCATGAAACGCATTGCCTTC
ATTCCAATTGGTGTTTTATTGTTTTTCATGTTTGTATTTATTATTGGCGA
TGGTGTACTCTCGTTGCTGATAATATATACTTCATCTTATAAGGTCGCCA
AGGTATCGAGCTGGAATAAATTTCCACATCGAGTGAGAACTTCAATTCAG
TGGCTCCGGGGGAGAATTTGTGACGACTTACTGCACGATGGGACATTCGA
AGACATAACAAGCGAAGATATTTCTTTGAAGGCGACCCCTGAAATCTTTC
AGATGCTCCCGAAAATGCCGTATTCCCACCAGCAGTGA