Ggra10038.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10038.t1
Unique NameGgra10038.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Homology
BLAST of Ggra10038.t1 vs. uniprot
Match: A0A2V3IXV8 (RAB6A-GEF complex partner protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXV8_9FLOR)

HSP 1 Score: 275 bits (704), Expect = 9.110e-82
Identity = 153/275 (55.64%), Postives = 179/275 (65.09%), Query Frame = 0
Query:    1 MLGTTQWLIMHNIELDSGTLPNYVIEVKRQPILHTLLRHLLMKPKSNERIALQVALKCVPQPQLIDSLEWLLYEAVLGHEDDQRIELNGDNSNITSENKPISAAEGSNTPPLKSRSMPHAYPNYPNEGKLKT----------------------------------VYSLAS-----FDYCGTLVNMR-----ILLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGTLNSSQLGTNEDVPWIAEATGSPKGDALSSITLNH 231
            +LG TQ L++HNIE++S  +P+Y I+VKRQPILHTLLRHLL+KPK +ER  LQVALKCV QPQ IDSLEWLLYEAVL HEDDQ +  NGDN+   S+NK IS     +TPPLK +S P  YP  P   K  +                                  ++SLA       + C     +R     +++  +MWGF SST HSLRLVEAALERGELELAADLA FLGKADRAG LNSSQL TNEDV WI EA G+PKGDAL+SITLNH
Sbjct:  811 LLGATQGLVLHNIEVESAPVPSYAIQVKRQPILHTLLRHLLIKPKMDERTTLQVALKCVSQPQFIDSLEWLLYEAVLEHEDDQNVLPNGDNARFESDNKVISQNSEESTPPLKPKSRPQVYPESPRRQKAGSNLFPRVIRLLRYFGEYEDIVVRCARKLDSKRWPLLFSLAGEPAALLEQCFVSGRLRTAACLLVILQEMWGFISSTPHSLRLVEAALERGELELAADLAGFLGKADRAGMLNSSQLRTNEDVSWIGEAVGAPKGDALNSITLNH 1085          
BLAST of Ggra10038.t1 vs. uniprot
Match: R7QPS8 (RIC1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPS8_CHOCR)

HSP 1 Score: 209 bits (531), Expect = 1.850e-58
Identity = 127/270 (47.04%), Postives = 167/270 (61.85%), Query Frame = 0
Query:    1 MLGTTQWLIMHNIELDSGTLPNYVIEVKRQPILHTLLRHLLMKPKSNERIALQVALKCVPQPQLIDSLEWLLYEAVLGHEDDQRIELNGDNSNITSENKP-------------ISAAEGSNTPPLKSRSMPHAYPN------YPNE---------GKLKT-----VYSLAS-----FDYCGTLVNMR-----ILLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGTLNSSQLGTNEDVPWIAEATGSPKGDALSSI 227
            +LG TQ L+ HN++ +SG++P +VI+VKRQPILHTLLRHLLMKP S+ER ALQVALKCVPQPQ  DSLEWLLYEAVL H++D  + +N  +    ++ +              +++++G    P + ++    +P       Y  E          KL +     ++SLA       + C     +R     +++  +MWGF SST HSLRLVEAAL RGEL LAADLA+FL KADRAG LNSSQL T EDV WIAEA  +P+  ALS +
Sbjct:  539 LLGATQGLVTHNLDSESGSMPCHVIQVKRQPILHTLLRHLLMKPMSDERTALQVALKCVPQPQFADSLEWLLYEAVLEHDEDANVNINARSILAVTDGRGMHPKRQYGPGSTHLTSSKGFPESPRRRKAGGDLFPRVIRLLKYFGEYEDVVVRCARKLDSKRWPLLFSLAGEPAALLEQCFVSGRLRTAACLLVILQEMWGFISSTPHSLRLVEAALARGELSLAADLANFLTKADRAGMLNSSQLRTTEDVSWIAEAVQAPQAGALSRL 808          
BLAST of Ggra10038.t1 vs. uniprot
Match: A0A5J4Z397 (RAB6A-GEF complex partner protein 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z397_PORPP)

HSP 1 Score: 138 bits (348), Expect = 8.450e-34
Identity = 89/199 (44.72%), Postives = 117/199 (58.79%), Query Frame = 0
Query:   21 PNYVIEVKRQPILHTLLRHLLMKPKSNERIALQVALKCVPQPQLIDSLEWLLYEAVLGHEDDQRIELNGDNSNITSE-NKPISAAEGSNTPPLKSRSM-PHAYP---NYPNEGKLKTVYSLASFDYCGTLVNMRILLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGTLNSSQLGTNEDVPWIAE 214
            PN+ +++KRQP+LHTLLRH++M     ER ALQVA  C   PQ +DSLEWLLYE+VL H++D     N   +   S  N      E  +     +R M P  +P   +Y  E      +   S D   T   + ++L  +MWGF SST HSLRL+EAAL RGE++LA +L+ FL KADRAG LN  Q+   EDV W+ E
Sbjct: 1029 PNFTVKLKRQPVLHTLLRHIIMS--GRERHALQVAASCTDYPQFMDSLEWLLYESVLEHDNDNSQSGNASTALFPSVLNLLRYFGEYEDVVVRCARKMDPKRWPVLFSYAGEPAAMLEHCFNS-DRLYTASCLLVIL-QEMWGFISSTPHSLRLLEAALNRGEVDLALELSSFLMKADRAGVLNEKQIRIREDVSWVEE 1223          
BLAST of Ggra10038.t1 vs. uniprot
Match: A0A1X6PDQ8 (RIC1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDQ8_PORUM)

HSP 1 Score: 100 bits (248), Expect = 1.590e-20
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0
Query:  150 ILLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGTLNSSQLGTNEDVPWIAEATGSPKGDALS 225
            +++  +MWGF SST HSLRL++AALERGEL LAADLA+FL KADRAG LNSSQL   EDV W+A AT  P   A S
Sbjct:  261 LVILQEMWGFISSTPHSLRLLDAALERGELGLAADLANFLSKADRAGMLNSSQLTAREDVGWMAAATARPSATAPS 336          
BLAST of Ggra10038.t1 vs. uniprot
Match: A0A7S2ZS29 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZS29_9RHOD)

HSP 1 Score: 67.0 bits (162), Expect = 3.110e-9
Identity = 60/212 (28.30%), Postives = 96/212 (45.28%), Query Frame = 0
Query:    1 MLGTTQWLIMHNIELDSGTLPNYVIEVKRQPILHTLLRHLLMKPKSNERIALQVALKCVPQPQLIDSLEWLLYEAVL---------GHEDDQRIELNGDNSNITS-----ENKPISAAEGSNTPPLKSRSMPHAYPNYPNEGKL-KTVYSLASFDYCGTLVNMRILLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGT 197
            M+G +Q +    +      +P   I+V+ QP  H +L HLL    S+++ AL+ A +C+  PQ +DSLEWLL+EAV          G E  ++ E       +       E+  I  A       ++S+  P  +        L +  Y    F     L    +++  +MWG  SS  H  RL++  +E G  +LA+DL  FL  A+ A +
Sbjct:   93 MIGISQKVEPDVVRGAGVIVPFCSIDVRGQPFFHRVLSHLLRT--SDDKEALKFAYQCLDLPQFVDSLEWLLFEAVSDDVENGNGRGGETYEKREFRSRVLRLLHYFGEYEDIVIRCARK-----MESKKWPLLFAEVGEPAALLEMCYMSKQFRSAACL----LIVLQEMWGLLSSLHHIARLLDRVIEEGCYDLASDLRHFLDNAEMAAS 293          
BLAST of Ggra10038.t1 vs. uniprot
Match: A0A7S0BSE6 (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BSE6_9RHOD)

HSP 1 Score: 67.0 bits (162), Expect = 3.660e-9
Identity = 62/218 (28.44%), Postives = 96/218 (44.04%), Query Frame = 0
Query:    1 MLGTTQWLIMHNIELDSGTLPNYVIEVKRQPILHTLLRHLLMKPKSNERIALQVALKCVPQPQLIDSLEWLLYEAVLGHEDDQRIELNGDNSNITSENKP--------------------ISAAEGSNTPPLKSRSMPHAYPNYPNEGKL-KTVYSLASFDYCGTLVNMRILLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGT 197
            M+G +Q +    +      +P   I+V+ QP  H +L HLL    S+++ AL+ A +C+  PQ +DSLEWLL+EAV    DD     NG+ S   +  K                     I  A       ++S+  P  +        L +  Y    F     L    +++  +MWG  SS  H  RL++  +E G  +LA+DL  FL  A+ A +
Sbjct:  755 MIGISQKVEPDVVRGAGEVVPFCSIDVRGQPFFHRVLSHLLRA--SDDKDALKFAYQCLDLPQFVDSLEWLLFEAV---SDDME---NGNGSGGGTYEKREFRSRVLRLLHYFGEYEDIVIRCARK-----MESKKWPLLFAEVGEPAALLEMCYMSKQFRSAACL----LIVLQEMWGLLSSLHHIARLLDRVIEEGCYDLASDLRHFLDNAEIAAS 955          
The following BLAST results are available for this feature:
BLAST of Ggra10038.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IXV89.110e-8255.64RAB6A-GEF complex partner protein 1 n=1 Tax=Gracil... [more]
R7QPS81.850e-5847.04RIC1 domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A5J4Z3978.450e-3444.72RAB6A-GEF complex partner protein 1 n=1 Tax=Porphy... [more]
A0A1X6PDQ81.590e-2065.79RIC1 domain-containing protein n=1 Tax=Porphyra um... [more]
A0A7S2ZS293.110e-928.30Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BSE63.660e-928.44Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009771Ribosome control protein 1PFAMPF07064RIC1coord: 19..92
e-value: 5.8E-5
score: 22.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:122720..123555 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10038.t1Ggra10038.t1Gracilaria gracilis GNS1m malemRNAtig00000222_pilon 122720..123555 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10038.t1 ID=Ggra10038.t1|Name=Ggra10038.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MLGTTQWLIMHNIELDSGTLPNYVIEVKRQPILHTLLRHLLMKPKSNERI
ALQVALKCVPQPQLIDSLEWLLYEAVLGHEDDQRIELNGDNSNITSENKP
ISAAEGSNTPPLKSRSMPHAYPNYPNEGKLKTVYSLASFDYCGTLVNMRI
LLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGTLNS
SQLGTNEDVPWIAEATGSPKGDALSSITLNHLSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009771Ribosome_control_1