Ggra10038.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10038.t1
Unique NameGgra10038.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:122720..123555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10038Ggra10038Gracilaria gracilis GNS1m malegenetig00000222_pilon 122720..123555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10038.t1Ggra10038.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 122720..123555 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10038.t1.stop1Ggra10038.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 122720..122722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10038.t1.CDS1Ggra10038.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 122720..122962 -
Ggra10038.t1.CDS2Ggra10038.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000222_pilon 123094..123555 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10038.t1.exon1Ggra10038.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 122720..122962 -
Ggra10038.t1.exon2Ggra10038.t1.exon2Gracilaria gracilis GNS1m maleexontig00000222_pilon 123094..123555 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10038.t1.intron1Ggra10038.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000222_pilon 122963..123093 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10038.t1.start1Ggra10038.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 123553..123555 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10038.t1 ID=Ggra10038.t1|Name=Ggra10038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MLGTTQWLIMHNIELDSGTLPNYVIEVKRQPILHTLLRHLLMKPKSNERI
ALQVALKCVPQPQLIDSLEWLLYEAVLGHEDDQRIELNGDNSNITSENKP
ISAAEGSNTPPLKSRSMPHAYPNYPNEGKLKTVYSLASFDYCGTLVNMRI
LLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGTLNS
SQLGTNEDVPWIAEATGSPKGDALSSITLNHLSG*
back to top

spliced messenger RNA

>Ggra10038.t1 ID=Ggra10038.t1|Name=Ggra10038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000222_pilon:122720..123555- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGGAACGACGCAGTGGCTTATAATGCATAACATTGAATTGGACAG
TGGAACGCTTCCTAATTACGTGATCGAGGTCAAACGGCAACCAATTCTAC
ATACCTTGCTCCGTCACTTGTTGATGAAGCCAAAGTCCAACGAGAGAATT
GCGCTCCAAGTGGCCCTGAAATGCGTGCCGCAGCCGCAGCTTATTGACTC
TCTAGAGTGGTTGTTGTATGAGGCCGTTCTTGGACATGAAGATGATCAGC
GCATAGAGTTGAATGGTGATAACAGTAACATAACTTCCGAAAACAAACCA
ATCTCTGCCGCCGAAGGTAGCAATACCCCACCCCTCAAATCCAGGAGCAT
GCCTCATGCGTATCCGAACTACCCAAACGAAGGAAAGCTGAAAACGGTTT
ATTCCCTCGCGTCATTCGACTATTGCGGTACTTTGGTGAATATGAGGATA
TTGTTGTATGATGATATGTGGGGCTTTACTTCGTCAACGTGTCACTCTTT
ACGGTTGGTAGAAGCAGCGCTTGAAAGGGGTGAATTGGAACTAGCTGCCG
ATCTAGCTGATTTTCTTGGGAAGGCGGATCGTGCAGGGACGCTGAATTCT
TCTCAGCTGGGAACAAATGAAGATGTCCCATGGATTGCAGAAGCGACCGG
GTCGCCGAAGGGTGATGCGTTAAGTAGCATAACTTTGAATCATTTGTCTG
GGTAG
back to top

protein sequence of Ggra10038.t1

>Ggra10038.t1 ID=Ggra10038.t1|Name=Ggra10038.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MLGTTQWLIMHNIELDSGTLPNYVIEVKRQPILHTLLRHLLMKPKSNERI
ALQVALKCVPQPQLIDSLEWLLYEAVLGHEDDQRIELNGDNSNITSENKP
ISAAEGSNTPPLKSRSMPHAYPNYPNEGKLKTVYSLASFDYCGTLVNMRI
LLYDDMWGFTSSTCHSLRLVEAALERGELELAADLADFLGKADRAGTLNS
SQLGTNEDVPWIAEATGSPKGDALSSITLNHLSG*
back to top

mRNA from alignment at tig00000222_pilon:122720..123555-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10038.t1 ID=Ggra10038.t1|Name=Ggra10038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=836bp|location=Sequence derived from alignment at tig00000222_pilon:122720..123555- (Gracilaria gracilis GNS1m male)
ATGCTTGGAACGACGCAGTGGCTTATAATGCATAACATTGAATTGGACAG
TGGAACGCTTCCTAATTACGTGATCGAGGTCAAACGGCAACCAATTCTAC
ATACCTTGCTCCGTCACTTGTTGATGAAGCCAAAGTCCAACGAGAGAATT
GCGCTCCAAGTGGCCCTGAAATGCGTGCCGCAGCCGCAGCTTATTGACTC
TCTAGAGTGGTTGTTGTATGAGGCCGTTCTTGGACATGAAGATGATCAGC
GCATAGAGTTGAATGGTGATAACAGTAACATAACTTCCGAAAACAAACCA
ATCTCTGCCGCCGAAGGTAGCAATACCCCACCCCTCAAATCCAGGAGCAT
GCCTCATGCGTATCCGAACTACCCAAACGAAGGAAAGCTGAAAACGGTTT
ATTCCCTCGCGTCATTCGACTATTGCGGTACTTTGGTGAATATGAGGATA
TTGTTGTATGATGTGCGCGGAAGCTGTGTTCCAAAAAGTGGCCTTTACTG
TTCCCGCTCGCTGGAGAACCTGCTGCTCTTCTCTAACAATGTTTTGTATC
CAGATGATTACGAATGGCTGCCTGCCTGACCATTGTTCTACAGGATATGT
GGGGCTTTACTTCGTCAACGTGTCACTCTTTACGGTTGGTAGAAGCAGCG
CTTGAAAGGGGTGAATTGGAACTAGCTGCCGATCTAGCTGATTTTCTTGG
GAAGGCGGATCGTGCAGGGACGCTGAATTCTTCTCAGCTGGGAACAAATG
AAGATGTCCCATGGATTGCAGAAGCGACCGGGTCGCCGAAGGGTGATGCG
TTAAGTAGCATAACTTTGAATCATTTGTCTGGGTAG
back to top

Coding sequence (CDS) from alignment at tig00000222_pilon:122720..123555-

>Ggra10038.t1 ID=Ggra10038.t1|Name=Ggra10038.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000222_pilon:122720..123555- (Gracilaria gracilis GNS1m male)
ATGCTTGGAACGACGCAGTGGCTTATAATGCATAACATTGAATTGGACAG
TGGAACGCTTCCTAATTACGTGATCGAGGTCAAACGGCAACCAATTCTAC
ATACCTTGCTCCGTCACTTGTTGATGAAGCCAAAGTCCAACGAGAGAATT
GCGCTCCAAGTGGCCCTGAAATGCGTGCCGCAGCCGCAGCTTATTGACTC
TCTAGAGTGGTTGTTGTATGAGGCCGTTCTTGGACATGAAGATGATCAGC
GCATAGAGTTGAATGGTGATAACAGTAACATAACTTCCGAAAACAAACCA
ATCTCTGCCGCCGAAGGTAGCAATACCCCACCCCTCAAATCCAGGAGCAT
GCCTCATGCGTATCCGAACTACCCAAACGAAGGAAAGCTGAAAACGGTTT
ATTCCCTCGCGTCATTCGACTATTGCGGTACTTTGGTGAATATGAGGATA
TTGTTGTATGATGATATGTGGGGCTTTACTTCGTCAACGTGTCACTCTTT
ACGGTTGGTAGAAGCAGCGCTTGAAAGGGGTGAATTGGAACTAGCTGCCG
ATCTAGCTGATTTTCTTGGGAAGGCGGATCGTGCAGGGACGCTGAATTCT
TCTCAGCTGGGAACAAATGAAGATGTCCCATGGATTGCAGAAGCGACCGG
GTCGCCGAAGGGTGATGCGTTAAGTAGCATAACTTTGAATCATTTGTCTG
GGTAG
back to top