Ggra10026.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10026.t1
Unique NameGgra10026.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Homology
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A2V3IK73 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK73_9FLOR)

HSP 1 Score: 174 bits (441), Expect = 1.190e-49
Identity = 90/193 (46.63%), Postives = 131/193 (67.88%), Query Frame = 0
Query:    4 VVNDEKAKLFVAIALEDVTRLHLCGLPLSHIAKQRHIDEKDFHITLNFIGLEDVRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGVQASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQLNARFEAQSFTVRDFVLMESPPAGAARARAAAAAKYVVRHRYALQQ 196
            +VN+ +  LFVAI ++D TRLHLCGLP+SHI K+R  D+K +H+TL+FIG  +  +VH  L+ ++ + F++++KGVGAFP+   P TLWAGV AS +L  L  +++  L ASG ++  +   Y PH+TLAWV  ++  IEA  EFL++N +FEA  F V +FVLME+  AG+  +       YVVR RY L++
Sbjct:  191 IVNEPR--LFVAILVDDATRLHLCGLPISHIPKRRAADDKGYHLTLSFIGNANYSRVHSALQGVEADAFEVQVKGVGAFPSRKRPLTLWAGVAASRELERLQFMVREALVASGYKLDTR--AYVPHITLAWVHNTQVGIEAGVEFLEMNKQFEANRFRVGEFVLMETLRAGSKESGTHGV--YVVRERYGLRE 377          
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A5R8YBQ2 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Cohaesibacter sp. CAU 1516 TaxID=2576038 RepID=A0A5R8YBQ2_9HYPH)

HSP 1 Score: 88.2 bits (217), Expect = 1.740e-18
Identity = 52/146 (35.62%), Postives = 86/146 (58.90%), Query Frame = 0
Query:   25 HLCGLPLSHIAKQRHIDEKDFHITLNFIGLEDVRKVHDV---LKQIQFEQFDIRIKGVGAFPAETYPRTLWAGVQASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQLNARFEAQSFTVRDFVL 167
            +L  L    +   R +D+ ++HITL F+G  D    +++   + QIQ+ +FD+ ++G GAF ++  P +++A VQ S+ L  LH  L+ R+   G++  DKH+ Y PHVTLA + K+  AI+ A  +L +   F  + F+V  FVL
Sbjct:   16 NLLSLQKGGLYGARWVDQSNYHITLRFMGDVDYALANEIVFEMSQIQYPEFDLSLRGFGAFGSKK-PHSVFAAVQNSEDLYLLHRELEQRMNKIGLK-PDKHD-YTPHVTLARLNKNAEAIDVAN-YLAMRGNFRTEQFSVPRFVL 157          
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A2H9LJI0 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Candidatus Bathyarchaeota archaeon CG07_land_8_20_14_0_80_47_9 TaxID=1974385 RepID=A0A2H9LJI0_9ARCH)

HSP 1 Score: 82.8 bits (203), Expect = 2.840e-16
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 0
Query:   40 IDEKDFHITLNFIGL---EDVRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGV-QASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQLNARFE 156
            ++ K+ H+TL F+G      V K+ + +K+IQF  FD+R++GVGAFP   YPR +W G+ Q +D+L S+   L+ +L   G     K   + PH+T+A V      +E A E+L  N  FE
Sbjct:   44 VEPKNIHMTLRFLGNITPNTVEKIFEEMKKIQFVPFDVRLRGVGAFPNPRYPRVVWTGITQGADQLRSIFEQLEPKLLRLGFAPDPKG--FSPHLTIARVRSGRNRVELA-EYLSENENFE 161          
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A7J3NUF3 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J3NUF3_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 5.010e-15
Identity = 56/172 (32.56%), Postives = 89/172 (51.74%), Query Frame = 0
Query:    7 DEKAKLFVAIALED---VTRLHLCGLPLSHI-AKQRHIDEKDFHITLNFIG---LEDVRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGV-QASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQLNARFEAQSFTVRDFVLMES 170
             E  + F+A  ++D   + ++      L+   A  + ++ ++ HITL F+G   L  V KV+DV+K + F+ F I+I+GVGAFP   +P  +WAGV Q + +L S+   L+  L+  G     K   + PH+T+A V    +  E  K+  + NA  E  SFT     L  S
Sbjct:   14 SEAIRSFIAFDIDDQQIIDKIQSFQRILAETGADLKLVEPQNIHITLRFLGNITLNMVDKVYDVMKNVSFKPFTIKIQGVGAFPKIHHPSVIWAGVKQGTLELRSIFDQLEFGLRRLGFPPEPKG--FSPHITIARVKSGRSRSELVKKINE-NANIEFGSFTAECLRLKRS 182          
BLAST of Ggra10026.t1 vs. uniprot
Match: T0T1T7 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Bacteriovorax sp. BSW11_IV TaxID=1353529 RepID=T0T1T7_9PROT)

HSP 1 Score: 78.2 bits (191), Expect = 1.150e-14
Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = 0
Query:   11 KLFVAIALEDVTRLHLCGLPLSHIAKQRHIDEKDFHITLNFIGLED---VRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGVQASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQLNARFEAQSFTVRDFVLMES 170
            +LFVA+ +      +L  L  + I   R +DE++ H+TL F+G  +   V ++ DVL++IQ + F +R+  VG F + T PR LW  V+ S  L  L + ++  L  +G  +  +  ++ PHVT+A +   E   E    F   N+ F  + F +  F L ES
Sbjct:    3 RLFVALEIPRPISSNLINLK-TPIPGARWVDERNLHLTLQFLGEVENDRVDELIDVLEEIQTDYFSLRLYDVGHFGSRTAPRVLWVNVEKSLALQELQSEVESLLDKNGFSIEKR--KFVPHVTIARL--KETHYEDLVNFTMENSLFSTEQFEITHFHLYES 160          
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A518ANV7 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518ANV7_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 4.120e-14
Identity = 57/173 (32.95%), Postives = 88/173 (50.87%), Query Frame = 0
Query:    9 KAKLFVAIAL--EDVTRLHLCGLPLSHIAKQ-RHIDEKDFHITLNFIGLEDVRKVHDVLKQIQ-----FEQFDIRIKGVGAFPAETYPRTLWAGV-QASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIE--AAKEFLQLNARFEAQSFTVRDFVLMES 170
            K + F+A+A   E V R     + L  +A   + ++  + H TL+F+G  D ++V+DV K  +      E F +  +GVGAFP+ + PRTLW G  +  D L+ LH  L+ +L+  G R   +  +Y PH+TL    +S    E  A  E L     FE  S TV + ++  S
Sbjct:    3 KVRTFIAVAPGPEVVERAERALMRLRRLADNVKWVERSNLHWTLHFLGELDDQEVYDVCKAAERAAGEVEAFSMIAEGVGAFPSNSRPRTLWLGAGEGGDGLVDLHAKLEEQLRPLGFRGETR--KYVPHLTLGRAGRSLRPAESVALAEDLAKLTDFEGGSQTVEELIVYAS 173          
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A3E0ND33 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0ND33_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 5.500e-14
Identity = 51/179 (28.49%), Postives = 85/179 (47.49%), Query Frame = 0
Query:    2 SRVVNDEKAKLFVAIALEDVTRLHLCGLPLSHI----AKQRHIDEKDFHITLNFIGLEDVRKVHDVLKQIQ-----FEQFDIRIKGVGAFPAETYPRTLWAGV-QASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQLNARFEAQSFTVRDFVLMES 170
            +RV      + F+A+ L +V RL    L +  +    A  + +   + H TL F+G    R++  V + ++        F+I ++G GAFPA T PRT+W GV +  D  + LH  L+  L   G R   +  +++PH+TL  V +S   ++     ++    FEA    V + V   S
Sbjct:   10 TRVGTMATLRTFIAVELPNVVRLAAVDL-IERLRDTPANVKWVGAAELHWTLKFLGDVPSREIPHVCRAMRQAVEGLASFEIEVRGAGAFPAATRPRTVWLGVGEGLDAFVELHDALERSLAKLGFR--SERRRFQPHITLGRVRRSPFGVDELGGLIEQEVEFEAGRMRVAEVVAFSS 185          
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A662UIG7 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662UIG7_9CREN)

HSP 1 Score: 76.6 bits (187), Expect = 5.540e-14
Identity = 45/138 (32.61%), Postives = 82/138 (59.42%), Query Frame = 0
Query:   13 FVAIALEDVTRLHLCGLPLSHIAKQ----RHIDEKDFHITLNFIG------LEDVRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGV-QASDKLLSLHTLLKLRLKASGVR-VSDKHEQYRPHVTLAWVAKS 138
            F+AI +ED   L       ++IA      + +++++ H+TL F+G      +E+V+++   LK I+  +F+IR+KGVGAFP+ T PR +WAG+ + +++L  + +++   +   G+R +     Q+ PH+TLA V  S
Sbjct:    5 FIAIEIEDPAVLKKLIEVKNYIAGVGAGIKPVEDENIHLTLRFLGEISQHSVEEVKRILTELKSIK--RFNIRVKGVGAFPSITRPRVIWAGITEGAEELKRIRSIIDKAIVEHGLRDIKPDEHQFVPHITLARVKSS 140          
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A7C4HM76 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Desulfurococcaceae archaeon TaxID=2184738 RepID=A0A7C4HM76_9CREN)

HSP 1 Score: 75.9 bits (185), Expect = 1.060e-13
Identity = 43/134 (32.09%), Postives = 78/134 (58.21%), Query Frame = 0
Query:    7 DEKAKLFVAIALEDVTRLHLCGLPLSHIAKQ----RHIDEKDFHITLNFIGLED---VRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGV-QASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTL 132
             E  + F+A+ +E+   L         +A      + +++++ H+TL FIG      V+ + + +  ++F+QF I +KG+GAFP+ T PR +WAGV + SDKL+ L+ L++   +  GV+   + E++ PH+TL
Sbjct:    2 SELIRTFIAVEVENKDVLRKLIEVRDQLAATGTDLKPVEDENIHLTLRFIGEVPAGLVKVLCNEISGLKFQQFQIHVKGLGAFPSPTRPRVIWAGVSEGSDKLVELYRLVETITRKLGVQ--PEREEFVPHITL 133          
BLAST of Ggra10026.t1 vs. uniprot
Match: A0A3R7ERI9 (RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A3R7ERI9_9ARCH)

HSP 1 Score: 75.5 bits (184), Expect = 1.510e-13
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:   40 IDEKDFHITLNFIG---LEDVRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGV-QASDKLLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWV 135
            ++ K+ HIT+ F+G   L  V K+++V+K + F+ F++RI G+GAFP   YPR LWAG+   +DKL ++   L+  L+  G     +   + PH+T+A V
Sbjct:   39 VEPKNIHITVRFLGNIRLGMVEKIYEVMKNVAFKPFNVRIHGIGAFPKLRYPRVLWAGITDGADKLRNIFNQLEPSLRGLGFAPDTRG--FSPHLTIARV 136          
The following BLAST results are available for this feature:
BLAST of Ggra10026.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IK731.190e-4946.63RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Gracila... [more]
A0A5R8YBQ21.740e-1835.62RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Cohaesi... [more]
A0A2H9LJI02.840e-1638.02RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Candida... [more]
A0A7J3NUF35.010e-1532.56RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Candida... [more]
T0T1T71.150e-1431.90RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Bacteri... [more]
A0A518ANV74.120e-1432.95RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Aeoliel... [more]
A0A3E0ND335.500e-1428.49RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Plancto... [more]
A0A662UIG75.540e-1432.61RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Thermop... [more]
A0A7C4HM761.060e-1332.09RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Desulfu... [more]
A0A3R7ERI91.510e-1338.00RNA 2',3'-cyclic phosphodiesterase n=1 Tax=Candida... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF135632_5_RNA_ligase2coord: 45..169
e-value: 3.4E-13
score: 49.9
NoneNo IPR availableGENE3D3.90.1140.10Cyclic phosphodiesterasecoord: 11..196
e-value: 3.3E-30
score: 107.3
IPR004175RNA 2',3'-cyclic phosphodiesteraseTIGRFAMTIGR02258TIGR02258coord: 11..173
e-value: 7.7E-32
score: 108.6
IPR004175RNA 2',3'-cyclic phosphodiesterasePANTHERPTHR35561RNA 2',3'-CYCLIC PHOSPHODIESTERASEcoord: 7..195
IPR004175RNA 2',3'-cyclic phosphodiesteraseHAMAPMF_01940RNA_CPDasecoord: 10..194
score: 18.805222
IPR009097Cyclic phosphodiesteraseSUPERFAMILY55144LigT-likecoord: 11..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:89530..90126 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10026.t1Ggra10026.t1Gracilaria gracilis GNS1m malemRNAtig00000222_pilon 89530..90126 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10026.t1 ID=Ggra10026.t1|Name=Ggra10026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MSRVVNDEKAKLFVAIALEDVTRLHLCGLPLSHIAKQRHIDEKDFHITLN
FIGLEDVRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGVQASDK
LLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQ
LNARFEAQSFTVRDFVLMESPPAGAARARAAAAAKYVVRHRYALQQPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004175RNA_CPDase
IPR009097Cyclic_Pdiesterase