Ggra10026.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10026.t1
Unique NameGgra10026.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:89530..90126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog404380.Gbem_0107
PFAMsLigT_PEase
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K01975
Evalue3.45e-19
EggNOG OGsCOG1514@1|root,COG1514@2|Bacteria,1RDB2@1224|Proteobacteria,42TMM@68525|delta/epsilon subdivisions,2WQ6S@28221|Deltaproteobacteria,43V5A@69541|Desulfuromonadales
EC3.1.4.58
DescriptionHydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10026Ggra10026Gracilaria gracilis GNS1m malegenetig00000222_pilon 89530..90126 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10026.t1.start1Ggra10026.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 89530..89532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10026.t1.CDS1Ggra10026.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 89530..90126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10026.t1.exon1Ggra10026.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 89530..90126 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10026.t1.stop1Ggra10026.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 90124..90126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10026.t1Ggra10026.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 89530..90126 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10026.t1 ID=Ggra10026.t1|Name=Ggra10026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=199bp
MSRVVNDEKAKLFVAIALEDVTRLHLCGLPLSHIAKQRHIDEKDFHITLN
FIGLEDVRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGVQASDK
LLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQ
LNARFEAQSFTVRDFVLMESPPAGAARARAAAAAKYVVRHRYALQQPQ*
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spliced messenger RNA

>Ggra10026.t1 ID=Ggra10026.t1|Name=Ggra10026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000222_pilon:89530..90126+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACGCGTGGTAAATGACGAAAAGGCGAAGTTGTTCGTGGCCATTGC
GCTAGAGGACGTGACGCGACTGCATCTTTGCGGTCTACCGCTGTCGCACA
TTGCAAAGCAACGTCATATCGATGAGAAGGACTTTCACATCACGCTCAAC
TTTATCGGGCTGGAAGACGTACGCAAGGTGCATGACGTTTTGAAACAGAT
TCAGTTCGAGCAGTTTGACATACGCATCAAGGGCGTGGGCGCATTTCCCG
CCGAGACGTATCCGCGCACGCTGTGGGCCGGCGTGCAGGCCAGCGACAAG
TTGCTATCGCTGCACACGCTGCTCAAGCTGCGACTCAAGGCAAGCGGCGT
GCGCGTGAGCGATAAGCACGAGCAGTATCGACCGCATGTGACGCTGGCGT
GGGTGGCGAAATCGGAAGCGGCTATCGAAGCGGCCAAAGAGTTCCTGCAG
CTCAACGCGCGCTTCGAGGCGCAGTCGTTCACCGTGCGCGACTTCGTGCT
CATGGAGTcgccgcccgccggcgccgcgcgcgcgcgcgccgccgccgcgG
CCAAGTACGTGGTGCGCCACCGCTACGCGCTGCAGCAGCCGCAGTAA
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protein sequence of Ggra10026.t1

>Ggra10026.t1 ID=Ggra10026.t1|Name=Ggra10026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MSRVVNDEKAKLFVAIALEDVTRLHLCGLPLSHIAKQRHIDEKDFHITLN
FIGLEDVRKVHDVLKQIQFEQFDIRIKGVGAFPAETYPRTLWAGVQASDK
LLSLHTLLKLRLKASGVRVSDKHEQYRPHVTLAWVAKSEAAIEAAKEFLQ
LNARFEAQSFTVRDFVLMESPPAGAARARAAAAAKYVVRHRYALQQPQ*
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mRNA from alignment at tig00000222_pilon:89530..90126+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10026.t1 ID=Ggra10026.t1|Name=Ggra10026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000222_pilon:89530..90126+ (Gracilaria gracilis GNS1m male)
ATGTCACGCGTGGTAAATGACGAAAAGGCGAAGTTGTTCGTGGCCATTGC
GCTAGAGGACGTGACGCGACTGCATCTTTGCGGTCTACCGCTGTCGCACA
TTGCAAAGCAACGTCATATCGATGAGAAGGACTTTCACATCACGCTCAAC
TTTATCGGGCTGGAAGACGTACGCAAGGTGCATGACGTTTTGAAACAGAT
TCAGTTCGAGCAGTTTGACATACGCATCAAGGGCGTGGGCGCATTTCCCG
CCGAGACGTATCCGCGCACGCTGTGGGCCGGCGTGCAGGCCAGCGACAAG
TTGCTATCGCTGCACACGCTGCTCAAGCTGCGACTCAAGGCAAGCGGCGT
GCGCGTGAGCGATAAGCACGAGCAGTATCGACCGCATGTGACGCTGGCGT
GGGTGGCGAAATCGGAAGCGGCTATCGAAGCGGCCAAAGAGTTCCTGCAG
CTCAACGCGCGCTTCGAGGCGCAGTCGTTCACCGTGCGCGACTTCGTGCT
CATGGAGTcgccgcccgccggcgccgcgcgcgcgcgcgccgccgccgcgG
CCAAGTACGTGGTGCGCCACCGCTACGCGCTGCAGCAGCCGCAGTAA
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Coding sequence (CDS) from alignment at tig00000222_pilon:89530..90126+

>Ggra10026.t1 ID=Ggra10026.t1|Name=Ggra10026.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000222_pilon:89530..90126+ (Gracilaria gracilis GNS1m male)
ATGTCACGCGTGGTAAATGACGAAAAGGCGAAGTTGTTCGTGGCCATTGC
GCTAGAGGACGTGACGCGACTGCATCTTTGCGGTCTACCGCTGTCGCACA
TTGCAAAGCAACGTCATATCGATGAGAAGGACTTTCACATCACGCTCAAC
TTTATCGGGCTGGAAGACGTACGCAAGGTGCATGACGTTTTGAAACAGAT
TCAGTTCGAGCAGTTTGACATACGCATCAAGGGCGTGGGCGCATTTCCCG
CCGAGACGTATCCGCGCACGCTGTGGGCCGGCGTGCAGGCCAGCGACAAG
TTGCTATCGCTGCACACGCTGCTCAAGCTGCGACTCAAGGCAAGCGGCGT
GCGCGTGAGCGATAAGCACGAGCAGTATCGACCGCATGTGACGCTGGCGT
GGGTGGCGAAATCGGAAGCGGCTATCGAAGCGGCCAAAGAGTTCCTGCAG
CTCAACGCGCGCTTCGAGGCGCAGTCGTTCACCGTGCGCGACTTCGTGCT
CATGGAGTcgccgcccgccggcgccgcgcgcgcgcgcgccgccgccgcgG
CCAAGTACGTGGTGCGCCACCGCTACGCGCTGCAGCAGCCGCAGTAA
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