Ggra9990.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9990.t1
Unique NameGgra9990.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:120864..122426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9990Ggra9990Gracilaria gracilis GNS1m malegenetig00000213_pilon 120864..122426 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9990.t1.stop1Ggra9990.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 120864..120866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9990.t1.CDS1Ggra9990.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 120864..122426 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9990.t1.exon1Ggra9990.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 120864..122426 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9990.t1.start1Ggra9990.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 122424..122426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9990.t1Ggra9990.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 120864..122426 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9990.t1 ID=Ggra9990.t1|Name=Ggra9990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=521bp
MYSQGGTSPTSRPVHFENRALVHAVQHISRNLVRRVGLRYGDTVYGTLLS
QIWGQSKYATIDVLVRKRQESLDRKHKHRDRSPTKVVNSRDLHDNASLLS
EKEVRSHDDEEKKKKMKKLNDARDKLVRILRRVKDDTMAVNERRITMQIM
DRPGGLDVDALRRLWGVPRAVFEATGLYNYFSKHGDEKLIVDFYDTHIWG
AQPDSRIFNILYWKESGDSHRTDGSSKPQSRCCRTISQGIIRNVVENLLT
RRRSPLFEKNMDIATEIVLYALHPDGHVVTFRESALKEAGFFQGLQAYEY
SRSFAASLQNLHLAKLNRMLKDLKAVKELETNRRGAKGSVEFLSLATLRR
YCSERDTLTERALHAVVDRYARKGKSELHGTEELQISCAWFIRMYLALVG
SSTNLGLRYWFSVLDQDGDGWINLGDVAHFYSERKVESEKRNGIKLTDVQ
CLWIRLCAMSRVAPCGKGLNLSSLKELGKEEREFVMCALLIRRADDGNLT
DVAATIADSDGSSDASVELH*
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spliced messenger RNA

>Ggra9990.t1 ID=Ggra9990.t1|Name=Ggra9990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000213_pilon:120864..122426- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTCTCAGGGGGGAACTTCCCCAACATCGAGGCCTGTTCACTTTGA
AAATCGCGCCTTGGTTCACGCAGTTCAGCATATCAGCAGAAATCTGGTTA
GGCGAGTTGGTTTGAGGTATGGAGATACTGTGTACGGCACTCTGCTATCC
CAAATATGGGGACAGAGTAAGTATGCTACTATCGACGTGTTAGTGCGGAA
ACGTCAAGAAAGTCTCGATAGAAAGCACAAACATCGCGATAGAAGCCCAA
CAAAAGTTGTCAACTCCAGGGATCTCCATGACAATGCTTCTCTGCTATCT
GAAAAGGAAGTCAGGTCTCATGACGATGAAGAAAAAAAAAAGAAGATGAA
GAAGCTTAATGACGCACGCGACAAGCTTGTGAGAATCCTGAGGAGAGTAA
AAGACGATACCATGGCGGTGAATGAGCGACGGATTACAATGCAAATCATG
GATAGACCAGGTGGACTTGATGTGGATGCATTGCGCAGACTGTGGGGAGT
TCCTAGGGCGGTGTTTGAAGCAACCGGGCTCTATAACTATTTCAGTAAGC
ACGGAGATGAGAAGTTGATAGTTGATTTCTATGACACACATATTTGGGGA
GCTCAACCGGACTCAAGAATCTTTAATATCCTCTACTGGAAAGAGTCAGG
TGACTCCCACCGGACTGATGGGTCATCTAAGCCTCAGTCTCGGTGCTGTA
GAACGATATCACAGGGGATTATTCGAAATGTGGTCGAGAATTTGCTCACA
AGGAGACGGTCTCCGTTATTTGAGAAGAATATGGACATTGCGACTGAAAT
TGTGTTATATGCGCTTCACCCTGACGGGCATGTTGTCACATTTCGTGAGT
CTGCTCTAAAGGAAGCAGGCTTTTTTCAAGGGTTGCAAGCATACGAGTAT
TCCCGCTCTTTTGCAGCCTCTTTGCAGAATTTGCACCTTGCTAAGCTCAA
TCGAATGCTCAAAGATTTGAAGGCAGTGAAGGAACTTGAAACTAATAGAA
GAGGGGCTAAAGGTTCTGTGGAGTTTTTGTCGCTGGCGACGCTTCGGCGA
TATTGCTCCGAGCGCGACACACTCACTGAACGCGCTCTTCACGCTGTTGT
TGACCGATACGCGAGAAAGGGAAAGAGCGAACTGCATGGCACAGAAGAGC
TTCAAATAAGTTGTGCTTGGTTCATCCGTATGTACCTGGCCTTAGTAGGG
AGTTCAACTAATCTAGGTCTCAGATATTGGTTTTCTGTTCTCGACCAAGA
TGGAGATGGGTGGATAAACCTAGGAGATGTAGCCCATTTTTATTCAGAGA
GGAAAGTAGAAAGTGAGAAGAGAAATGGTATTAAGCTTACAGATGTGCAA
TGTTTGTGGATTCGGCTTTGCGCGATGAGCCGGGTCGCCCCATGCGGAAA
AGGACTCAACTTGAGTTCGCTGAAAGAGCTGGGAAAAGAAGAACGCGAGT
TCGTCATGTGTGCACTGCTCATTAGACGAGCTGATGATGGAAACTTAACT
GATGTTGCGGCAACAATAGCGGATTCGGATGGGTCCAGTGATGCCTCTGT
AGAACTACACTAA
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protein sequence of Ggra9990.t1

>Ggra9990.t1 ID=Ggra9990.t1|Name=Ggra9990.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=521bp
MYSQGGTSPTSRPVHFENRALVHAVQHISRNLVRRVGLRYGDTVYGTLLS
QIWGQSKYATIDVLVRKRQESLDRKHKHRDRSPTKVVNSRDLHDNASLLS
EKEVRSHDDEEKKKKMKKLNDARDKLVRILRRVKDDTMAVNERRITMQIM
DRPGGLDVDALRRLWGVPRAVFEATGLYNYFSKHGDEKLIVDFYDTHIWG
AQPDSRIFNILYWKESGDSHRTDGSSKPQSRCCRTISQGIIRNVVENLLT
RRRSPLFEKNMDIATEIVLYALHPDGHVVTFRESALKEAGFFQGLQAYEY
SRSFAASLQNLHLAKLNRMLKDLKAVKELETNRRGAKGSVEFLSLATLRR
YCSERDTLTERALHAVVDRYARKGKSELHGTEELQISCAWFIRMYLALVG
SSTNLGLRYWFSVLDQDGDGWINLGDVAHFYSERKVESEKRNGIKLTDVQ
CLWIRLCAMSRVAPCGKGLNLSSLKELGKEEREFVMCALLIRRADDGNLT
DVAATIADSDGSSDASVELH*
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mRNA from alignment at tig00000213_pilon:120864..122426-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9990.t1 ID=Ggra9990.t1|Name=Ggra9990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000213_pilon:120864..122426- (Gracilaria gracilis GNS1m male)
ATGTATTCTCAGGGGGGAACTTCCCCAACATCGAGGCCTGTTCACTTTGA
AAATCGCGCCTTGGTTCACGCAGTTCAGCATATCAGCAGAAATCTGGTTA
GGCGAGTTGGTTTGAGGTATGGAGATACTGTGTACGGCACTCTGCTATCC
CAAATATGGGGACAGAGTAAGTATGCTACTATCGACGTGTTAGTGCGGAA
ACGTCAAGAAAGTCTCGATAGAAAGCACAAACATCGCGATAGAAGCCCAA
CAAAAGTTGTCAACTCCAGGGATCTCCATGACAATGCTTCTCTGCTATCT
GAAAAGGAAGTCAGGTCTCATGACGATGAAGAAAAAAAAAAGAAGATGAA
GAAGCTTAATGACGCACGCGACAAGCTTGTGAGAATCCTGAGGAGAGTAA
AAGACGATACCATGGCGGTGAATGAGCGACGGATTACAATGCAAATCATG
GATAGACCAGGTGGACTTGATGTGGATGCATTGCGCAGACTGTGGGGAGT
TCCTAGGGCGGTGTTTGAAGCAACCGGGCTCTATAACTATTTCAGTAAGC
ACGGAGATGAGAAGTTGATAGTTGATTTCTATGACACACATATTTGGGGA
GCTCAACCGGACTCAAGAATCTTTAATATCCTCTACTGGAAAGAGTCAGG
TGACTCCCACCGGACTGATGGGTCATCTAAGCCTCAGTCTCGGTGCTGTA
GAACGATATCACAGGGGATTATTCGAAATGTGGTCGAGAATTTGCTCACA
AGGAGACGGTCTCCGTTATTTGAGAAGAATATGGACATTGCGACTGAAAT
TGTGTTATATGCGCTTCACCCTGACGGGCATGTTGTCACATTTCGTGAGT
CTGCTCTAAAGGAAGCAGGCTTTTTTCAAGGGTTGCAAGCATACGAGTAT
TCCCGCTCTTTTGCAGCCTCTTTGCAGAATTTGCACCTTGCTAAGCTCAA
TCGAATGCTCAAAGATTTGAAGGCAGTGAAGGAACTTGAAACTAATAGAA
GAGGGGCTAAAGGTTCTGTGGAGTTTTTGTCGCTGGCGACGCTTCGGCGA
TATTGCTCCGAGCGCGACACACTCACTGAACGCGCTCTTCACGCTGTTGT
TGACCGATACGCGAGAAAGGGAAAGAGCGAACTGCATGGCACAGAAGAGC
TTCAAATAAGTTGTGCTTGGTTCATCCGTATGTACCTGGCCTTAGTAGGG
AGTTCAACTAATCTAGGTCTCAGATATTGGTTTTCTGTTCTCGACCAAGA
TGGAGATGGGTGGATAAACCTAGGAGATGTAGCCCATTTTTATTCAGAGA
GGAAAGTAGAAAGTGAGAAGAGAAATGGTATTAAGCTTACAGATGTGCAA
TGTTTGTGGATTCGGCTTTGCGCGATGAGCCGGGTCGCCCCATGCGGAAA
AGGACTCAACTTGAGTTCGCTGAAAGAGCTGGGAAAAGAAGAACGCGAGT
TCGTCATGTGTGCACTGCTCATTAGACGAGCTGATGATGGAAACTTAACT
GATGTTGCGGCAACAATAGCGGATTCGGATGGGTCCAGTGATGCCTCTGT
AGAACTACACTAA
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Coding sequence (CDS) from alignment at tig00000213_pilon:120864..122426-

>Ggra9990.t1 ID=Ggra9990.t1|Name=Ggra9990.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1563bp|location=Sequence derived from alignment at tig00000213_pilon:120864..122426- (Gracilaria gracilis GNS1m male)
ATGTATTCTCAGGGGGGAACTTCCCCAACATCGAGGCCTGTTCACTTTGA
AAATCGCGCCTTGGTTCACGCAGTTCAGCATATCAGCAGAAATCTGGTTA
GGCGAGTTGGTTTGAGGTATGGAGATACTGTGTACGGCACTCTGCTATCC
CAAATATGGGGACAGAGTAAGTATGCTACTATCGACGTGTTAGTGCGGAA
ACGTCAAGAAAGTCTCGATAGAAAGCACAAACATCGCGATAGAAGCCCAA
CAAAAGTTGTCAACTCCAGGGATCTCCATGACAATGCTTCTCTGCTATCT
GAAAAGGAAGTCAGGTCTCATGACGATGAAGAAAAAAAAAAGAAGATGAA
GAAGCTTAATGACGCACGCGACAAGCTTGTGAGAATCCTGAGGAGAGTAA
AAGACGATACCATGGCGGTGAATGAGCGACGGATTACAATGCAAATCATG
GATAGACCAGGTGGACTTGATGTGGATGCATTGCGCAGACTGTGGGGAGT
TCCTAGGGCGGTGTTTGAAGCAACCGGGCTCTATAACTATTTCAGTAAGC
ACGGAGATGAGAAGTTGATAGTTGATTTCTATGACACACATATTTGGGGA
GCTCAACCGGACTCAAGAATCTTTAATATCCTCTACTGGAAAGAGTCAGG
TGACTCCCACCGGACTGATGGGTCATCTAAGCCTCAGTCTCGGTGCTGTA
GAACGATATCACAGGGGATTATTCGAAATGTGGTCGAGAATTTGCTCACA
AGGAGACGGTCTCCGTTATTTGAGAAGAATATGGACATTGCGACTGAAAT
TGTGTTATATGCGCTTCACCCTGACGGGCATGTTGTCACATTTCGTGAGT
CTGCTCTAAAGGAAGCAGGCTTTTTTCAAGGGTTGCAAGCATACGAGTAT
TCCCGCTCTTTTGCAGCCTCTTTGCAGAATTTGCACCTTGCTAAGCTCAA
TCGAATGCTCAAAGATTTGAAGGCAGTGAAGGAACTTGAAACTAATAGAA
GAGGGGCTAAAGGTTCTGTGGAGTTTTTGTCGCTGGCGACGCTTCGGCGA
TATTGCTCCGAGCGCGACACACTCACTGAACGCGCTCTTCACGCTGTTGT
TGACCGATACGCGAGAAAGGGAAAGAGCGAACTGCATGGCACAGAAGAGC
TTCAAATAAGTTGTGCTTGGTTCATCCGTATGTACCTGGCCTTAGTAGGG
AGTTCAACTAATCTAGGTCTCAGATATTGGTTTTCTGTTCTCGACCAAGA
TGGAGATGGGTGGATAAACCTAGGAGATGTAGCCCATTTTTATTCAGAGA
GGAAAGTAGAAAGTGAGAAGAGAAATGGTATTAAGCTTACAGATGTGCAA
TGTTTGTGGATTCGGCTTTGCGCGATGAGCCGGGTCGCCCCATGCGGAAA
AGGACTCAACTTGAGTTCGCTGAAAGAGCTGGGAAAAGAAGAACGCGAGT
TCGTCATGTGTGCACTGCTCATTAGACGAGCTGATGATGGAAACTTAACT
GATGTTGCGGCAACAATAGCGGATTCGGATGGGTCCAGTGATGCCTCTGT
AGAACTACACTAA
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