Ggra998.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra998.t1
Unique NameGgra998.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:109802..110296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1463821.JOGR01000010_gene3928
PFAMsDUF1775
Max annot lvl201174|Actinobacteria
Evalue6.4e-09
EggNOG OGsCOG4549@1|root,COG4549@2|Bacteria,2GN9H@201174|Actinobacteria,4F06J@85014|Glycomycetales
DescriptionDomain of unkown function (DUF1775)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra998Ggra998Gracilaria gracilis GNS1m malegenetig00000027_pilon 109802..110296 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra998.t1.start1Ggra998.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 109802..109804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra998.t1.CDS1Ggra998.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 109802..110296 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra998.t1.exon1Ggra998.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 109802..110296 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra998.t1.stop1Ggra998.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 110294..110296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra998.t1Ggra998.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 109802..110296 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra998.t1 ID=Ggra998.t1|Name=Ggra998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=165bp
MVCSKLLIAQFVVLFAAIFAHVKITPAEVPAGKTSIILLRVSHDCGDDTV
GTTNFTVMIPVKMRVTVERDTTWRIFINRNLGDDEHVASVTYLGFLPDGF
YKLFGLRLKIPEEFAGQKLFFPSYQDCHNQGTSLASDMIPNGDGTKLRYL
APYLNVTSGESSGH*
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spliced messenger RNA

>Ggra998.t1 ID=Ggra998.t1|Name=Ggra998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000027_pilon:109802..110296+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTGCTCTAAACTCTTGATTGCTCAATTTGTGGTATTGTTCGCCGC
CATATTCGCTCATGTGAAGATCACTCCGGCAGAAGTACCTGCCGGAAAGA
CATCAATTATTCTGCTAAGAGTATCTCATGACTGCGGCGATGACACCGTC
GGCACGACAAACTTCACGGTCATGATTCCGGTGAAGATGAGAGTGACTGT
TGAACGGGACACGACGTGGAGAATCTTTATCAACAGGAACCTTGGGGACG
ATGAGCACGTAGCGTCAGTGACATACCTAGGATTTCTGCCAGATGGATTC
TACAAATTGTTCGGCCTACGTCTGAAGATCCCGGAGGAATTCGCAGGCCA
GAAGTTGTTCTTCCCGAGTTATCAGGACTGTCACAACCAAGGTACATCTC
TCGCTTCGGATATGATTCCTAACGGGGATGGAACGAAGCTAAGGTATCTT
GCGCCGTACTTAAATGTGACTTCCGGAGAGAGCAGCGGGCACTAA
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protein sequence of Ggra998.t1

>Ggra998.t1 ID=Ggra998.t1|Name=Ggra998.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MVCSKLLIAQFVVLFAAIFAHVKITPAEVPAGKTSIILLRVSHDCGDDTV
GTTNFTVMIPVKMRVTVERDTTWRIFINRNLGDDEHVASVTYLGFLPDGF
YKLFGLRLKIPEEFAGQKLFFPSYQDCHNQGTSLASDMIPNGDGTKLRYL
APYLNVTSGESSGH*
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mRNA from alignment at tig00000027_pilon:109802..110296+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra998.t1 ID=Ggra998.t1|Name=Ggra998.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000027_pilon:109802..110296+ (Gracilaria gracilis GNS1m male)
ATGGTGTGCTCTAAACTCTTGATTGCTCAATTTGTGGTATTGTTCGCCGC
CATATTCGCTCATGTGAAGATCACTCCGGCAGAAGTACCTGCCGGAAAGA
CATCAATTATTCTGCTAAGAGTATCTCATGACTGCGGCGATGACACCGTC
GGCACGACAAACTTCACGGTCATGATTCCGGTGAAGATGAGAGTGACTGT
TGAACGGGACACGACGTGGAGAATCTTTATCAACAGGAACCTTGGGGACG
ATGAGCACGTAGCGTCAGTGACATACCTAGGATTTCTGCCAGATGGATTC
TACAAATTGTTCGGCCTACGTCTGAAGATCCCGGAGGAATTCGCAGGCCA
GAAGTTGTTCTTCCCGAGTTATCAGGACTGTCACAACCAAGGTACATCTC
TCGCTTCGGATATGATTCCTAACGGGGATGGAACGAAGCTAAGGTATCTT
GCGCCGTACTTAAATGTGACTTCCGGAGAGAGCAGCGGGCACTAA
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Coding sequence (CDS) from alignment at tig00000027_pilon:109802..110296+

>Ggra998.t1 ID=Ggra998.t1|Name=Ggra998.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00000027_pilon:109802..110296+ (Gracilaria gracilis GNS1m male)
ATGGTGTGCTCTAAACTCTTGATTGCTCAATTTGTGGTATTGTTCGCCGC
CATATTCGCTCATGTGAAGATCACTCCGGCAGAAGTACCTGCCGGAAAGA
CATCAATTATTCTGCTAAGAGTATCTCATGACTGCGGCGATGACACCGTC
GGCACGACAAACTTCACGGTCATGATTCCGGTGAAGATGAGAGTGACTGT
TGAACGGGACACGACGTGGAGAATCTTTATCAACAGGAACCTTGGGGACG
ATGAGCACGTAGCGTCAGTGACATACCTAGGATTTCTGCCAGATGGATTC
TACAAATTGTTCGGCCTACGTCTGAAGATCCCGGAGGAATTCGCAGGCCA
GAAGTTGTTCTTCCCGAGTTATCAGGACTGTCACAACCAAGGTACATCTC
TCGCTTCGGATATGATTCCTAACGGGGATGGAACGAAGCTAAGGTATCTT
GCGCCGTACTTAAATGTGACTTCCGGAGAGAGCAGCGGGCACTAA
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