Ggra9705.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9705.t1
Unique NameGgra9705.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000084_piloncontigtig00000084_pilon:524510..525100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LBV9
PFAMsPPR
Max annot lvl2759|Eukaryota
Evalue1.81e-17
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9705Ggra9705Gracilaria gracilis GNS1m malegenetig00000084_pilon 524510..525100 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9705.t1.start1Ggra9705.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000084_pilon 524510..524512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9705.t1.CDS1Ggra9705.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000084_pilon 524510..525100 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9705.t1.exon1Ggra9705.t1.exon1Gracilaria gracilis GNS1m maleexontig00000084_pilon 524510..525100 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9705.t1.stop1Ggra9705.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000084_pilon 525098..525100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9705.t1Ggra9705.t1Gracilaria gracilis GNS1m malepolypeptidetig00000084_pilon 524510..525100 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9705.t1 ID=Ggra9705.t1|Name=Ggra9705.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=197bp
MASFSYSALLKSHARANNVVAVYSAFAQLNHKQLPFDSVLLNSAVNALVR
CNDLATAMRMLADNANRPLLYVARHNTMIKDFARRGLVANAFGALNTMTA
AQCSPNQVTRNTLLSACVQAGDIDRAWRLIDNTELVLLPFNPSLTASVIY
YSSTPPHRADVKQDAVFSMQITIAFTSFMSGLADAGKVEEALKLFT*
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spliced messenger RNA

>Ggra9705.t1 ID=Ggra9705.t1|Name=Ggra9705.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000084_pilon:524510..525100+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCTTTTCTTACTCGGCTCTACTCAAATCCCACGCCCGCGCAAA
CAATGTTGTCGCTGTCTATTCTGCATTTGCTCAACTCAACCACAAACAAC
TCCCATTCGATTCTGTTTTGCTCAACTCTGCCGTCAATGCCCTTGTTCGA
TGCAATGATCTCGCTACCGCCATGCGTATGCTTGCTGACAACGCCAACAG
ACCACTGCTTTATGTAGCCAGGCACAACACTATGATCAAGGATTTCGCGC
GTCGGGGGCTCGTCGCAAACGCTTTCGGTGCCCTAAACACAATGACCGCA
GCGCAATGTTCTCCGAACCAAGTTACCAGAAATACCCTTCTTTCTGCTTG
TGTTCAAGCGGGCGATATTGACCGCGCGTGGCGCCTCATTGACAACACCG
AGCTTGTTTTGCTCCCTTTCAACCCCTCTCTCACTGCGTCCGTTATTTAT
TATTCATCTACTCCTCCCCACCGCGCTGATGTCAAGCAGGATGCTGTGTT
CTCCATGCAGATTACCATTGCATTCACGTCTTTCATGTCTGGGCTTGCAG
ATGCCGGCAAGGTTGAGGAAGCATTAAAGCTCTTCACCTGA
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protein sequence of Ggra9705.t1

>Ggra9705.t1 ID=Ggra9705.t1|Name=Ggra9705.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MASFSYSALLKSHARANNVVAVYSAFAQLNHKQLPFDSVLLNSAVNALVR
CNDLATAMRMLADNANRPLLYVARHNTMIKDFARRGLVANAFGALNTMTA
AQCSPNQVTRNTLLSACVQAGDIDRAWRLIDNTELVLLPFNPSLTASVIY
YSSTPPHRADVKQDAVFSMQITIAFTSFMSGLADAGKVEEALKLFT*
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mRNA from alignment at tig00000084_pilon:524510..525100+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9705.t1 ID=Ggra9705.t1|Name=Ggra9705.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000084_pilon:524510..525100+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCTTTTCTTACTCGGCTCTACTCAAATCCCACGCCCGCGCAAA
CAATGTTGTCGCTGTCTATTCTGCATTTGCTCAACTCAACCACAAACAAC
TCCCATTCGATTCTGTTTTGCTCAACTCTGCCGTCAATGCCCTTGTTCGA
TGCAATGATCTCGCTACCGCCATGCGTATGCTTGCTGACAACGCCAACAG
ACCACTGCTTTATGTAGCCAGGCACAACACTATGATCAAGGATTTCGCGC
GTCGGGGGCTCGTCGCAAACGCTTTCGGTGCCCTAAACACAATGACCGCA
GCGCAATGTTCTCCGAACCAAGTTACCAGAAATACCCTTCTTTCTGCTTG
TGTTCAAGCGGGCGATATTGACCGCGCGTGGCGCCTCATTGACAACACCG
AGCTTGTTTTGCTCCCTTTCAACCCCTCTCTCACTGCGTCCGTTATTTAT
TATTCATCTACTCCTCCCCACCGCGCTGATGTCAAGCAGGATGCTGTGTT
CTCCATGCAGATTACCATTGCATTCACGTCTTTCATGTCTGGGCTTGCAG
ATGCCGGCAAGGTTGAGGAAGCATTAAAGCTCTTCACCTGA
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Coding sequence (CDS) from alignment at tig00000084_pilon:524510..525100+

>Ggra9705.t1 ID=Ggra9705.t1|Name=Ggra9705.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=591bp|location=Sequence derived from alignment at tig00000084_pilon:524510..525100+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCTTTTCTTACTCGGCTCTACTCAAATCCCACGCCCGCGCAAA
CAATGTTGTCGCTGTCTATTCTGCATTTGCTCAACTCAACCACAAACAAC
TCCCATTCGATTCTGTTTTGCTCAACTCTGCCGTCAATGCCCTTGTTCGA
TGCAATGATCTCGCTACCGCCATGCGTATGCTTGCTGACAACGCCAACAG
ACCACTGCTTTATGTAGCCAGGCACAACACTATGATCAAGGATTTCGCGC
GTCGGGGGCTCGTCGCAAACGCTTTCGGTGCCCTAAACACAATGACCGCA
GCGCAATGTTCTCCGAACCAAGTTACCAGAAATACCCTTCTTTCTGCTTG
TGTTCAAGCGGGCGATATTGACCGCGCGTGGCGCCTCATTGACAACACCG
AGCTTGTTTTGCTCCCTTTCAACCCCTCTCTCACTGCGTCCGTTATTTAT
TATTCATCTACTCCTCCCCACCGCGCTGATGTCAAGCAGGATGCTGTGTT
CTCCATGCAGATTACCATTGCATTCACGTCTTTCATGTCTGGGCTTGCAG
ATGCCGGCAAGGTTGAGGAAGCATTAAAGCTCTTCACCTGA
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