Ggra9705.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9705.t1
Unique NameGgra9705.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Homology
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BLAST of Ggra9705.t1 vs. uniprot
Match: A0A2V3IXV2 (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXV2_9FLOR)

HSP 1 Score: 180 bits (456), Expect = 1.520e-49
Identity = 105/202 (51.98%), Postives = 134/202 (66.34%), Query Frame = 0 
Query:    1 MASFSYSALLKSHARANNVVAVYSAFAQLNHKQLPFDSVLLNSAVNALVRCNDLATAMRMLADNANRPLLYVARHNTMIKDFARRGLVANAFGALNTMTAAQCSPNQVTRNTLLSACVQAGDIDRAWRLIDNTEL---VLLPFNPSLTASVIYY----SSTPPH-RADVKQDAVFSMQITIAFTSFMSGLADAGKVEEALKL 194
            M  FSYS LLKSH RA NVVAV S  A++     P DS+L NSAV+ALVRCN++  A+R+LA++  RPLL VA +NT+IK FA RGLVA+AF  L+ M A  C+PN VTRNTLL ACVQAGD+DRA  LID T+    +    NP L      +    SST  H +    Q +  S Q+ I  TS M+GLAD+G+++EA++L
Sbjct:  184 MGPFSYSVLLKSHGRAGNVVAVNSVLAEIQLHHTPVDSILFNSAVDALVRCNNMGAALRLLAEDEYRPLLDVASYNTIIKGFAGRGLVADAFRVLDRMNANHCTPNDVTRNTLLLACVQAGDLDRAKSLIDATDSNGGLYQQNNPLLPQQQPQHLSTASSTAKHTKPSPHQISSSSKQLRIGLTSLMAGLADSGQLDEAMRL 385
The following BLAST results are available for this feature:
BLAST of Ggra9705.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IXV21.520e-4951.98Pentatricopeptide repeat-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 108..131
e-value: 0.0097
score: 16.1
coord: 174..195
e-value: 0.0019
score: 18.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 109..131
e-value: 7.9E-4
score: 17.4
coord: 174..195
e-value: 0.0019
score: 16.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 2..196
e-value: 9.5E-21
score: 76.5
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 76..195
NoneNo IPR availablePANTHERPTHR47932:SF44ATPASE EXPRESSION PROTEIN 3coord: 76..195
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 4..131
NoneNo IPR availablePANTHERPTHR47932:SF44ATPASE EXPRESSION PROTEIN 3coord: 4..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000084_piloncontigtig00000084_pilon:524510..525100 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9705.t1Ggra9705.t1Gracilaria gracilis GNS1m malemRNAtig00000084_pilon 524510..525100 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9705.t1 ID=Ggra9705.t1|Name=Ggra9705.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MASFSYSALLKSHARANNVVAVYSAFAQLNHKQLPFDSVLLNSAVNALVR
CNDLATAMRMLADNANRPLLYVARHNTMIKDFARRGLVANAFGALNTMTA
AQCSPNQVTRNTLLSACVQAGDIDRAWRLIDNTELVLLPFNPSLTASVIY
YSSTPPHRADVKQDAVFSMQITIAFTSFMSGLADAGKVEEALKLFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf