Ggra9366.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9366.t1
Unique NameGgra9366.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:105049..106107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9366Ggra9366Gracilaria gracilis GNS1m malegenetig00000883_pilon 105049..106107 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9366.t1.start1Ggra9366.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 105049..105051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9366.t1.CDS1Ggra9366.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 105049..106107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9366.t1.exon1Ggra9366.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 105049..106107 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9366.t1.stop1Ggra9366.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 106105..106107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9366.t1Ggra9366.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 105049..106107 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9366.t1 ID=Ggra9366.t1|Name=Ggra9366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MPSPAPVMNATAQQLSAASMQQPTPVVTKPDTLQYRCQLCQVSCDTMAQF
TSHSSGQKHRKKADLYNAFKEAEKRFPSESIRYEQPSTWHCQLCAASMHA
QNEVLQHMQCAKHNRLLHTAHINSSPGRVAAQNMPVTAIKPAAVSAAMAV
MQSPVTESSSSTLSPFRQQPDPAVQSSPASSNMTVRGPIAKPLKNNRATA
YACSVCNVTCTSNDNLNVHLASARHKKKVEGSALNNNIVCNVCQITVSGA
ANYEAHLKGKAHAKKQHQQNAAAENSASALLTMPPPTTTMNMNLPTVMPQ
PSTSGPLQALRVPSPSYSEAGTDVRPPIALPVRNQMPFRPVPYPEPPSGE
QS*
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spliced messenger RNA

>Ggra9366.t1 ID=Ggra9366.t1|Name=Ggra9366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000883_pilon:105049..106107+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAGTCCGGCGCCTGTTATGAATGCTACCGCGCAACAGCTTTCCGC
TGCCTCTATGCAGCAGCCGACGCCGGTGGTTACCAAGCCGGATACCTTGC
AGTATCGTTGCCAACTTTGTCAGGTGTCGTGTGATACCATGGCGCAGTTC
ACCAGCCATTCATCCGGTCAGAAGCATCGCAAGAAGGCCGATCTTTACAA
CGCCTTCAAGGAAGCCGAGAAACGCTTTCCCTCCGAATCCATCCGCTATG
AACAGCCTTCCACATGGCATTGTCAACTTTGTGCCGCCTCCATGCACGCT
CAGAACGAGGTCTTGCAACACATGCAATGTGCAAAGCACAACCGCTTATT
ACACACCGCACATATCAACTCGTCTCCCGGCAGAGTAGCTGCGCAGAATA
TGCCCGTTACTGCCATTAAACCTGCCGCAGTCTCAGCTGCTATGGCCGTC
ATGCAATCCCCCGTCACTGAATCTTCATCTTCTACGCTCTCGCCTTTCCG
TCAACAGCCTGATCCTGCCGTGCAATCTTCGCCTGCTTCGTCCAACATGA
CCGTGCGTGGCCCAATTGCAAAACCTTTGAAGAATAACAGGGCGACAGCG
TACGCATGTTCCGTTTGCAATGTCACGTGCACGTCGAACGACAATCTCAA
TGTCCATCTCGCCAGTGCGCGCCACAAAAAGAAAGTTGAAGGCTCTGCGT
TGAACAACAACATCGTTTGTAACGTATGTCAGATCACCGTTTCCGGTGCC
GCCAATTACGAGGCCCATTTAAAGGGAAAGGCGCATGCGAAGAAACAACA
CCAACAAAACGCCGCAGCAGAGAATTCAGCGTCTGCACTTTTGACAATGC
CACCACCTACTACCACGATGAACATGAATCTCCCAACTGTCATGCCGCAA
CCAAGCACATCAGGTCCGCTTCAAGCTTTACGTGTACCCTCACCAAGCTA
TTCCGAGGCGGGAACTGACGTGAGACCTCCCATTGCTTTACCTGTACGGA
ATCAGATGCCGTTCCGGCCCGTGCCATACCCCGAACCGCCGTCCGGCGAA
CAGTCCTAG
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protein sequence of Ggra9366.t1

>Ggra9366.t1 ID=Ggra9366.t1|Name=Ggra9366.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MPSPAPVMNATAQQLSAASMQQPTPVVTKPDTLQYRCQLCQVSCDTMAQF
TSHSSGQKHRKKADLYNAFKEAEKRFPSESIRYEQPSTWHCQLCAASMHA
QNEVLQHMQCAKHNRLLHTAHINSSPGRVAAQNMPVTAIKPAAVSAAMAV
MQSPVTESSSSTLSPFRQQPDPAVQSSPASSNMTVRGPIAKPLKNNRATA
YACSVCNVTCTSNDNLNVHLASARHKKKVEGSALNNNIVCNVCQITVSGA
ANYEAHLKGKAHAKKQHQQNAAAENSASALLTMPPPTTTMNMNLPTVMPQ
PSTSGPLQALRVPSPSYSEAGTDVRPPIALPVRNQMPFRPVPYPEPPSGE
QS*
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mRNA from alignment at tig00000883_pilon:105049..106107+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9366.t1 ID=Ggra9366.t1|Name=Ggra9366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000883_pilon:105049..106107+ (Gracilaria gracilis GNS1m male)
ATGCCTAGTCCGGCGCCTGTTATGAATGCTACCGCGCAACAGCTTTCCGC
TGCCTCTATGCAGCAGCCGACGCCGGTGGTTACCAAGCCGGATACCTTGC
AGTATCGTTGCCAACTTTGTCAGGTGTCGTGTGATACCATGGCGCAGTTC
ACCAGCCATTCATCCGGTCAGAAGCATCGCAAGAAGGCCGATCTTTACAA
CGCCTTCAAGGAAGCCGAGAAACGCTTTCCCTCCGAATCCATCCGCTATG
AACAGCCTTCCACATGGCATTGTCAACTTTGTGCCGCCTCCATGCACGCT
CAGAACGAGGTCTTGCAACACATGCAATGTGCAAAGCACAACCGCTTATT
ACACACCGCACATATCAACTCGTCTCCCGGCAGAGTAGCTGCGCAGAATA
TGCCCGTTACTGCCATTAAACCTGCCGCAGTCTCAGCTGCTATGGCCGTC
ATGCAATCCCCCGTCACTGAATCTTCATCTTCTACGCTCTCGCCTTTCCG
TCAACAGCCTGATCCTGCCGTGCAATCTTCGCCTGCTTCGTCCAACATGA
CCGTGCGTGGCCCAATTGCAAAACCTTTGAAGAATAACAGGGCGACAGCG
TACGCATGTTCCGTTTGCAATGTCACGTGCACGTCGAACGACAATCTCAA
TGTCCATCTCGCCAGTGCGCGCCACAAAAAGAAAGTTGAAGGCTCTGCGT
TGAACAACAACATCGTTTGTAACGTATGTCAGATCACCGTTTCCGGTGCC
GCCAATTACGAGGCCCATTTAAAGGGAAAGGCGCATGCGAAGAAACAACA
CCAACAAAACGCCGCAGCAGAGAATTCAGCGTCTGCACTTTTGACAATGC
CACCACCTACTACCACGATGAACATGAATCTCCCAACTGTCATGCCGCAA
CCAAGCACATCAGGTCCGCTTCAAGCTTTACGTGTACCCTCACCAAGCTA
TTCCGAGGCGGGAACTGACGTGAGACCTCCCATTGCTTTACCTGTACGGA
ATCAGATGCCGTTCCGGCCCGTGCCATACCCCGAACCGCCGTCCGGCGAA
CAGTCCTAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:105049..106107+

>Ggra9366.t1 ID=Ggra9366.t1|Name=Ggra9366.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000883_pilon:105049..106107+ (Gracilaria gracilis GNS1m male)
ATGCCTAGTCCGGCGCCTGTTATGAATGCTACCGCGCAACAGCTTTCCGC
TGCCTCTATGCAGCAGCCGACGCCGGTGGTTACCAAGCCGGATACCTTGC
AGTATCGTTGCCAACTTTGTCAGGTGTCGTGTGATACCATGGCGCAGTTC
ACCAGCCATTCATCCGGTCAGAAGCATCGCAAGAAGGCCGATCTTTACAA
CGCCTTCAAGGAAGCCGAGAAACGCTTTCCCTCCGAATCCATCCGCTATG
AACAGCCTTCCACATGGCATTGTCAACTTTGTGCCGCCTCCATGCACGCT
CAGAACGAGGTCTTGCAACACATGCAATGTGCAAAGCACAACCGCTTATT
ACACACCGCACATATCAACTCGTCTCCCGGCAGAGTAGCTGCGCAGAATA
TGCCCGTTACTGCCATTAAACCTGCCGCAGTCTCAGCTGCTATGGCCGTC
ATGCAATCCCCCGTCACTGAATCTTCATCTTCTACGCTCTCGCCTTTCCG
TCAACAGCCTGATCCTGCCGTGCAATCTTCGCCTGCTTCGTCCAACATGA
CCGTGCGTGGCCCAATTGCAAAACCTTTGAAGAATAACAGGGCGACAGCG
TACGCATGTTCCGTTTGCAATGTCACGTGCACGTCGAACGACAATCTCAA
TGTCCATCTCGCCAGTGCGCGCCACAAAAAGAAAGTTGAAGGCTCTGCGT
TGAACAACAACATCGTTTGTAACGTATGTCAGATCACCGTTTCCGGTGCC
GCCAATTACGAGGCCCATTTAAAGGGAAAGGCGCATGCGAAGAAACAACA
CCAACAAAACGCCGCAGCAGAGAATTCAGCGTCTGCACTTTTGACAATGC
CACCACCTACTACCACGATGAACATGAATCTCCCAACTGTCATGCCGCAA
CCAAGCACATCAGGTCCGCTTCAAGCTTTACGTGTACCCTCACCAAGCTA
TTCCGAGGCGGGAACTGACGTGAGACCTCCCATTGCTTTACCTGTACGGA
ATCAGATGCCGTTCCGGCCCGTGCCATACCCCGAACCGCCGTCCGGCGAA
CAGTCCTAG
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