Ggra9366.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9366.t1
Unique NameGgra9366.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Homology
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BLAST of Ggra9366.t1 vs. uniprot
Match: A0A2V3IVE1 (Putative phosphatase YhcW n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVE1_9FLOR)

HSP 1 Score: 115 bits (287), Expect = 1.700e-24
Identity = 89/276 (32.25%), Postives = 125/276 (45.29%), Query Frame = 0 
Query:   47 MAQFTSHSSGQKHRKKADLYNAFKEAEKRFPSESIRYEQPSTWHCQLCAASMHAQNEVLQHMQCAKHNRLLHTAHINSSPGRVAAQNMPVTAIKPAAVSAAMAVMQS------------PVTESSSSTLSPFRQQP--------------------------------------------------------------------------DPAVQSSPASSNMTVRGPIA---KPLKNNRATAYACSVCNVTCTSNDNLNVHLASARHKKKVEGSA 233
            + +F+ H SGQKHRKKA+L+NAFK A++RF  ESI  + PS W+CQLC  S+HA NEVLQH+ CAKH RL   A  ++SP R A ++ P  A  P  VS A+ V+ S            P + +  +T++     P                                                                           P ++SSP   + T   P +   +P+      A+ CSVC++TC SNDNLN HLASARH+KK++ ++
Sbjct:  275 LIEFSIHQSGQKHRKKAELHNAFKLAQRRFSQESILQQAPSQWYCQLCRTSIHAHNEVLQHLNCAKHRRLSPPA--STSPHRAAPES-PHPAFTPPPVSPALNVIPSASTRPPPTHVAAPTSTAQPNTITATTSSPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRSSPQLRSSPQPVSTTSSQPSSSTPQPI----VGAFHCSVCDITCNSNDNLNAHLASARHRKKLDNAS 543
The following BLAST results are available for this feature:
BLAST of Ggra9366.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IVE11.700e-2432.25Putative phosphatase YhcW n=1 Tax=Gracilariopsis c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 201..225
e-value: 0.046
score: 22.9
coord: 238..262
e-value: 11.0
score: 13.1
coord: 89..113
e-value: 20.0
score: 10.6
coord: 35..59
e-value: 2.9
score: 16.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 240..262
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 203..225
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 32..66
e-value: 0.0056
score: 25.9
coord: 86..120
e-value: 1.0
score: 12.1
coord: 198..232
e-value: 5.9E-4
score: 29.1
coord: 235..269
e-value: 0.0046
score: 26.2
NoneNo IPR availablePFAMPF12874zf-metcoord: 239..262
e-value: 1.7E-6
score: 28.2
coord: 201..225
e-value: 3.8E-6
score: 27.1
coord: 35..59
e-value: 0.071
score: 13.5
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 190..230
e-value: 2.0E-8
score: 35.6
coord: 231..270
e-value: 4.2E-8
score: 34.6
coord: 16..65
e-value: 2.2E-8
score: 35.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..352
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..352
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..190
NoneNo IPR availablePANTHERPTHR46786ZINC FINGER MATRIN-TYPE PROTEIN 3coord: 236..288
coord: 7..235
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 30..68
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 233..269
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 196..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:105049..106107 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9366.t1Ggra9366.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 105049..106107 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9366.t1 ID=Ggra9366.t1|Name=Ggra9366.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MPSPAPVMNATAQQLSAASMQQPTPVVTKPDTLQYRCQLCQVSCDTMAQF
TSHSSGQKHRKKADLYNAFKEAEKRFPSESIRYEQPSTWHCQLCAASMHA
QNEVLQHMQCAKHNRLLHTAHINSSPGRVAAQNMPVTAIKPAAVSAAMAV
MQSPVTESSSSTLSPFRQQPDPAVQSSPASSNMTVRGPIAKPLKNNRATA
YACSVCNVTCTSNDNLNVHLASARHKKKVEGSALNNNIVCNVCQITVSGA
ANYEAHLKGKAHAKKQHQQNAAAENSASALLTMPPPTTTMNMNLPTVMPQ
PSTSGPLQALRVPSPSYSEAGTDVRPPIALPVRNQMPFRPVPYPEPPSGE
QS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR036236Znf_C2H2_sf