Ggra9143.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9143.t1
Unique NameGgra9143.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:88483..89151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9143Ggra9143Gracilaria gracilis GNS1m malegenetig00000075_pilon 88483..89151 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9143.t1.stop1Ggra9143.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 88483..88485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9143.t1.CDS1Ggra9143.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 88483..89151 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9143.t1.exon1Ggra9143.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 88483..89151 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9143.t1.start1Ggra9143.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 89149..89151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9143.t1Ggra9143.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 88483..89151 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9143.t1 ID=Ggra9143.t1|Name=Ggra9143.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=223bp
MPAATQRHDEDDDSSSDDGFQVNAVTTADGVRVPKHSSPKPRRAAIRPLT
AYDDASSSSSSSSSSSPAPVAPQPSPAPLAAAKKRVRFADAVSPRKRART
RAEDARELQREREDEEALLMSELARFEARVDAIDRDQETVTQELRDATDF
YEQVAQRRLERRVAMLRNRLRDDSVVHSVREGEMEDMHAEDRRLDGDDLS
DEHIEIKRVLRAPTKHVQRKRE*
back to top

spliced messenger RNA

>Ggra9143.t1 ID=Ggra9143.t1|Name=Ggra9143.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000075_pilon:88483..89151- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCCGCGACGCAGCGCCATGACGAAGACGACGATTCTTCGTCTGA
CGACGGCTTCCAGGTGAACGCTGTCACCACCGCCGACGGCGTCCGTGTCC
CCAAGCACTCTTCCCCCAAGCCGCGTCGCGCTGCCATTCGCCCGCTCACG
GCGTACGACGACGCTTCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCCC
GGCGCCCGTCGCGCCACAGCCATCCCCCGCGCCCCTCGCAGCCGCGAAGA
AGCGCGTGCGTTTCGCAGACGCGGTGAGTCCGCGCAAGCGCGCGCGCACG
CGCGCAGAGGACGCGCGCGAGTTGCAGCGCGAACGCGAGGACGAGGAGGC
GCTGCTGATGTCCGAGCTGGCGCGTTTTGAGGCGCGTGTTGACGCTATTG
ATCGCGATCAAGAGACTGTCACACAGGAGTTGCGCGACGCTACCGACTTT
TACGAACAGGTGGCGCAACGGCGGTTGGAACGACGCGTGGCCATGCTGCG
CAATCGACTGCGAGATGACAGCGTCGTGCACAGCGTGCGTGAAGGGGAGA
TGGAGGATATGCATGCTGAGGATCGACGACTTGACGGCGACGATTTGAGC
GATGAGCATATTGAGATCAAACGCGTGTTAAGAGCTCCAACGAAACATGT
ACAGCGTAAACGTGAATAA
back to top

protein sequence of Ggra9143.t1

>Ggra9143.t1 ID=Ggra9143.t1|Name=Ggra9143.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=223bp
MPAATQRHDEDDDSSSDDGFQVNAVTTADGVRVPKHSSPKPRRAAIRPLT
AYDDASSSSSSSSSSSPAPVAPQPSPAPLAAAKKRVRFADAVSPRKRART
RAEDARELQREREDEEALLMSELARFEARVDAIDRDQETVTQELRDATDF
YEQVAQRRLERRVAMLRNRLRDDSVVHSVREGEMEDMHAEDRRLDGDDLS
DEHIEIKRVLRAPTKHVQRKRE*
back to top

mRNA from alignment at tig00000075_pilon:88483..89151-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9143.t1 ID=Ggra9143.t1|Name=Ggra9143.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00000075_pilon:88483..89151- (Gracilaria gracilis GNS1m male)
ATGCCGGCCGCGACGCAGCGCCATGACGAAGACGACGATTCTTCGTCTGA
CGACGGCTTCCAGGTGAACGCTGTCACCACCGCCGACGGCGTCCGTGTCC
CCAAGCACTCTTCCCCCAAGCCGCGTCGCGCTGCCATTCGCCCGCTCACG
GCGTACGACGACGCTTCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCCC
GGCGCCCGTCGCGCCACAGCCATCCCCCGCGCCCCTCGCAGCCGCGAAGA
AGCGCGTGCGTTTCGCAGACGCGGTGAGTCCGCGCAAGCGCGCGCGCACG
CGCGCAGAGGACGCGCGCGAGTTGCAGCGCGAACGCGAGGACGAGGAGGC
GCTGCTGATGTCCGAGCTGGCGCGTTTTGAGGCGCGTGTTGACGCTATTG
ATCGCGATCAAGAGACTGTCACACAGGAGTTGCGCGACGCTACCGACTTT
TACGAACAGGTGGCGCAACGGCGGTTGGAACGACGCGTGGCCATGCTGCG
CAATCGACTGCGAGATGACAGCGTCGTGCACAGCGTGCGTGAAGGGGAGA
TGGAGGATATGCATGCTGAGGATCGACGACTTGACGGCGACGATTTGAGC
GATGAGCATATTGAGATCAAACGCGTGTTAAGAGCTCCAACGAAACATGT
ACAGCGTAAACGTGAATAA
back to top

Coding sequence (CDS) from alignment at tig00000075_pilon:88483..89151-

>Ggra9143.t1 ID=Ggra9143.t1|Name=Ggra9143.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00000075_pilon:88483..89151- (Gracilaria gracilis GNS1m male)
ATGCCGGCCGCGACGCAGCGCCATGACGAAGACGACGATTCTTCGTCTGA
CGACGGCTTCCAGGTGAACGCTGTCACCACCGCCGACGGCGTCCGTGTCC
CCAAGCACTCTTCCCCCAAGCCGCGTCGCGCTGCCATTCGCCCGCTCACG
GCGTACGACGACGCTTCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCCC
GGCGCCCGTCGCGCCACAGCCATCCCCCGCGCCCCTCGCAGCCGCGAAGA
AGCGCGTGCGTTTCGCAGACGCGGTGAGTCCGCGCAAGCGCGCGCGCACG
CGCGCAGAGGACGCGCGCGAGTTGCAGCGCGAACGCGAGGACGAGGAGGC
GCTGCTGATGTCCGAGCTGGCGCGTTTTGAGGCGCGTGTTGACGCTATTG
ATCGCGATCAAGAGACTGTCACACAGGAGTTGCGCGACGCTACCGACTTT
TACGAACAGGTGGCGCAACGGCGGTTGGAACGACGCGTGGCCATGCTGCG
CAATCGACTGCGAGATGACAGCGTCGTGCACAGCGTGCGTGAAGGGGAGA
TGGAGGATATGCATGCTGAGGATCGACGACTTGACGGCGACGATTTGAGC
GATGAGCATATTGAGATCAAACGCGTGTTAAGAGCTCCAACGAAACATGT
ACAGCGTAAACGTGAATAA
back to top