Ggra9090.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9090.t1
Unique NameGgra9090.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length582
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:166125..167870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010035771.1
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
GOsGO:0000003,GO:0000209,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009664,GO:0009791,GO:0009827,GO:0009845,GO:0009987,GO:0010154,GO:0010191,GO:0010393,GO:0010498,GO:0012505,GO:0016043,GO:0016567,GO:0016740,GO:0017144,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0036211,GO:0042545,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044464,GO:0045229,GO:0045488,GO:0048316,GO:0048363,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0080001,GO:0090351,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue2.4e-117
EggNOG OGsCOG5540@1|root,KOG0828@2759|Eukaryota,37I5S@33090|Viridiplantae,3GBCE@35493|Streptophyta
DescriptionTransmembrane E3 ubiquitin-protein ligase
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9090Ggra9090Gracilaria gracilis GNS1m malegenetig00000176_pilon 166125..167870 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9090.t1.stop1Ggra9090.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 166125..166127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9090.t1.CDS1Ggra9090.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 166125..167870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9090.t1.exon1Ggra9090.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 166125..167870 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9090.t1.start1Ggra9090.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 167868..167870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9090.t1Ggra9090.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 166125..167870 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp
MRSQRATTPCIRQLWLPLLLAAAALHAAAAASSAAAPHSFPRNLRRLYDG
SWESTQLFPNASFHNRAGFALLTAENHRTAFSQATNLVRAELLVRDGAYR
TQRDLSLNMLGLYDQPSGTVVLVGDVLFDEVPAVLHRLYRVYISTPHVLP
LNVSEARFVAALSPSFQKQRKQYRAQRALPRASVAAQCPFQATFSVTEGQ
FTDNTPSDDSHPFDPDGPGVLSGRQLDPNDEYVEMKGVFVSEQCDTKISL
VLSTLDTETLFGKAINYTLLVTVVAFIQVIVLIRQMEMTSTQAGARRVSL
MTVGLQAVADSYLCLGHLTMGIAVQPLFNAFATAAFFKFICFSIFLMRWM
LLIWKARRPSGFSEGWEAMRRELSMLYSRFYGSLLVGIILLYQLQNHLRF
FLFALYSFWVPQIILNAVEDHRRPLLPSYIIGSTVTRLAIPLYFWGCPHN
FLHIQPRPGSAIALVVWLFTQAIILLSQYKFGPRWFIPKELLPEKYDYYR
PIVLDDETEDLEAAAGECRPLVAGAPAEPLRECCICMEPVPVNSRERMVT
PCDHFFHSDCLEKWLEIRLECALCRTPVPPP*
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spliced messenger RNA

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000176_pilon:166125..167870- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCACAGCGCGCCACCACGCCGTGCATCCGCCAACTATGGCTGCC
GCTGCTGCTCGCCGCCGCCGCGCTCCACGCCGCCGCCGCCGCCTCCAGCG
CCGCCGCCCCGCACTCCTTCCCGCGCAACCTGCGCCGCCTGTACGACGGC
TCGTGGGAATCCACGCAGCTGTTCCCCAACGCGTCGTTCCACAACCGCGC
CGGCTTCGCGCTGCTCACGGCGGAGAACCATCGCACCGCCTTCTCGCAGG
CCACCAACCTCGTGCGCGCCGAGCTGCTCGTCAGGGATGGCGCTTATCGC
ACGCAGCGCGACCTCTCGCTCAACATGCTGGGGCTGTATGACCAGCCTTC
TGGCACCGTTGTTCTGGTGGGCGACGTGCTGTTTGACGAGGTGCCTGCCG
TGCTGCACAGGTTGTATCGCGTGTATATCAGTACCCCTCATGTGTTGCCG
CTCAACGTGTCGGAGGCACGCTTTGTGGCCGCGCTCTCGCCCTCGTTTCA
GAAGCAGCGCAAGCAGTATCGCGCGCAGCGCGCTTTGCCGCGCGCGTCAG
TGGCGGCGCAGTGTCCGTTTCAAGCCACCTTCTCCGTCACGGAGGGGCAG
TTTACGGACAATACACCGAGCGACGACTCGCATCCGTTCGACCCGGATGG
GCCGGGCGTGCTGTCGGGACGCCAGCTGGATCCGAACGACGAGTATGTAG
AGATGAAGGGCGTGTTTGTGTCGGAGCAGTGTGACACCAAGATTTCGTTG
GTGTTGTCTACCTTGGATACGGAGACTTTGTTTGGGAAGGCTATTAACTA
CACCTTGCTTGTCACCGTCGTCGCTTTCATTCAGGTCATTGTTTTGATTC
GACAGATGGAGATGACGAGCACGCAAGCAGGTGCTAGACGGGTCTCGCTC
ATGACGGTGGGTTTGCAGGCTGTGGCCGATTCTTACTTGTGTCTGGGGCA
TTTGACTATGGGTATTGCCGTACAGCCGTTGTTTAATGCGTTTGCTACCG
CCGCTTTCTTCAAGTTTATTTGTTTCTCTATCTTTCTCATGCGCTGGATG
CTGTTGATTTGGAAGGCTCGTCGCCCGTCTGGCTTTTCCGAGGGGTGGGA
AGCTATGCGTCGCGAGCTGTCCATGCTGTATTCTCGCTTCTATGGTTCGT
TGCTCGTCGGTATTATTCTTTTGTATCAGCTTCAAAACCATCTGCGCTTC
TTCTTGTTTGCGCTGTATTCGTTCTGGGTTCCACAGATTATTCTCAACGC
TGTTGAGGATCACCGTCGTCCGCTTCTTCCCTCCTACATTATTGGCTCCA
CTGTCACTCGTCTTGCGATCCCTCTGTATTTCTGGGGATGTCCTCATAAC
TTTTTGCACATACAACCGCGACCGGGCTCCGCGATTGCGTTGGTCGTCTG
GCTTTTCACTCAAGCCATCATCTTACTTTCTCAGTACAAGTTTGGTCCGC
GCTGGTTTATTCCGAAAGAATTGCTGCCGGAAAAGTATGACTACTACCGC
CCCATCGTTCTGGATGATGAGACGGAAGATCTTGAGGCCGCCGCTGGCGA
GTGCCGCCCGCTCGTGGCTGGTGCACCAGCAGAACCTTTGCGGGAGTGTT
GTATTTGTATGGAACCGGTTCCTGTCAATTCGAGGGAACGAATGGTCACT
CCTTGTGATCATTTCTTTCATAGCGACTGTTTGGAGAAGTGGCTGGAGAT
AAGACTTGAATGTGCTTTGTGTCGCACGCCCGTTCCGCCACCTTGA
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protein sequence of Ggra9090.t1

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=582bp
MRSQRATTPCIRQLWLPLLLAAAALHAAAAASSAAAPHSFPRNLRRLYDG
SWESTQLFPNASFHNRAGFALLTAENHRTAFSQATNLVRAELLVRDGAYR
TQRDLSLNMLGLYDQPSGTVVLVGDVLFDEVPAVLHRLYRVYISTPHVLP
LNVSEARFVAALSPSFQKQRKQYRAQRALPRASVAAQCPFQATFSVTEGQ
FTDNTPSDDSHPFDPDGPGVLSGRQLDPNDEYVEMKGVFVSEQCDTKISL
VLSTLDTETLFGKAINYTLLVTVVAFIQVIVLIRQMEMTSTQAGARRVSL
MTVGLQAVADSYLCLGHLTMGIAVQPLFNAFATAAFFKFICFSIFLMRWM
LLIWKARRPSGFSEGWEAMRRELSMLYSRFYGSLLVGIILLYQLQNHLRF
FLFALYSFWVPQIILNAVEDHRRPLLPSYIIGSTVTRLAIPLYFWGCPHN
FLHIQPRPGSAIALVVWLFTQAIILLSQYKFGPRWFIPKELLPEKYDYYR
PIVLDDETEDLEAAAGECRPLVAGAPAEPLRECCICMEPVPVNSRERMVT
PCDHFFHSDCLEKWLEIRLECALCRTPVPPP*
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mRNA from alignment at tig00000176_pilon:166125..167870-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000176_pilon:166125..167870- (Gracilaria gracilis GNS1m male)
ATGCGCTCACAGCGCGCCACCACGCCGTGCATCCGCCAACTATGGCTGCC
GCTGCTGCTCGCCGCCGCCGCGCTCCACGCCGCCGCCGCCGCCTCCAGCG
CCGCCGCCCCGCACTCCTTCCCGCGCAACCTGCGCCGCCTGTACGACGGC
TCGTGGGAATCCACGCAGCTGTTCCCCAACGCGTCGTTCCACAACCGCGC
CGGCTTCGCGCTGCTCACGGCGGAGAACCATCGCACCGCCTTCTCGCAGG
CCACCAACCTCGTGCGCGCCGAGCTGCTCGTCAGGGATGGCGCTTATCGC
ACGCAGCGCGACCTCTCGCTCAACATGCTGGGGCTGTATGACCAGCCTTC
TGGCACCGTTGTTCTGGTGGGCGACGTGCTGTTTGACGAGGTGCCTGCCG
TGCTGCACAGGTTGTATCGCGTGTATATCAGTACCCCTCATGTGTTGCCG
CTCAACGTGTCGGAGGCACGCTTTGTGGCCGCGCTCTCGCCCTCGTTTCA
GAAGCAGCGCAAGCAGTATCGCGCGCAGCGCGCTTTGCCGCGCGCGTCAG
TGGCGGCGCAGTGTCCGTTTCAAGCCACCTTCTCCGTCACGGAGGGGCAG
TTTACGGACAATACACCGAGCGACGACTCGCATCCGTTCGACCCGGATGG
GCCGGGCGTGCTGTCGGGACGCCAGCTGGATCCGAACGACGAGTATGTAG
AGATGAAGGGCGTGTTTGTGTCGGAGCAGTGTGACACCAAGATTTCGTTG
GTGTTGTCTACCTTGGATACGGAGACTTTGTTTGGGAAGGCTATTAACTA
CACCTTGCTTGTCACCGTCGTCGCTTTCATTCAGGTCATTGTTTTGATTC
GACAGATGGAGATGACGAGCACGCAAGCAGGTGCTAGACGGGTCTCGCTC
ATGACGGTGGGTTTGCAGGCTGTGGCCGATTCTTACTTGTGTCTGGGGCA
TTTGACTATGGGTATTGCCGTACAGCCGTTGTTTAATGCGTTTGCTACCG
CCGCTTTCTTCAAGTTTATTTGTTTCTCTATCTTTCTCATGCGCTGGATG
CTGTTGATTTGGAAGGCTCGTCGCCCGTCTGGCTTTTCCGAGGGGTGGGA
AGCTATGCGTCGCGAGCTGTCCATGCTGTATTCTCGCTTCTATGGTTCGT
TGCTCGTCGGTATTATTCTTTTGTATCAGCTTCAAAACCATCTGCGCTTC
TTCTTGTTTGCGCTGTATTCGTTCTGGGTTCCACAGATTATTCTCAACGC
TGTTGAGGATCACCGTCGTCCGCTTCTTCCCTCCTACATTATTGGCTCCA
CTGTCACTCGTCTTGCGATCCCTCTGTATTTCTGGGGATGTCCTCATAAC
TTTTTGCACATACAACCGCGACCGGGCTCCGCGATTGCGTTGGTCGTCTG
GCTTTTCACTCAAGCCATCATCTTACTTTCTCAGTACAAGTTTGGTCCGC
GCTGGTTTATTCCGAAAGAATTGCTGCCGGAAAAGTATGACTACTACCGC
CCCATCGTTCTGGATGATGAGACGGAAGATCTTGAGGCCGCCGCTGGCGA
GTGCCGCCCGCTCGTGGCTGGTGCACCAGCAGAACCTTTGCGGGAGTGTT
GTATTTGTATGGAACCGGTTCCTGTCAATTCGAGGGAACGAATGGTCACT
CCTTGTGATCATTTCTTTCATAGCGACTGTTTGGAGAAGTGGCTGGAGAT
AAGACTTGAATGTGCTTTGTGTCGCACGCCCGTTCCGCCACCTTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:166125..167870-

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1746bp|location=Sequence derived from alignment at tig00000176_pilon:166125..167870- (Gracilaria gracilis GNS1m male)
ATGCGCTCACAGCGCGCCACCACGCCGTGCATCCGCCAACTATGGCTGCC
GCTGCTGCTCGCCGCCGCCGCGCTCCACGCCGCCGCCGCCGCCTCCAGCG
CCGCCGCCCCGCACTCCTTCCCGCGCAACCTGCGCCGCCTGTACGACGGC
TCGTGGGAATCCACGCAGCTGTTCCCCAACGCGTCGTTCCACAACCGCGC
CGGCTTCGCGCTGCTCACGGCGGAGAACCATCGCACCGCCTTCTCGCAGG
CCACCAACCTCGTGCGCGCCGAGCTGCTCGTCAGGGATGGCGCTTATCGC
ACGCAGCGCGACCTCTCGCTCAACATGCTGGGGCTGTATGACCAGCCTTC
TGGCACCGTTGTTCTGGTGGGCGACGTGCTGTTTGACGAGGTGCCTGCCG
TGCTGCACAGGTTGTATCGCGTGTATATCAGTACCCCTCATGTGTTGCCG
CTCAACGTGTCGGAGGCACGCTTTGTGGCCGCGCTCTCGCCCTCGTTTCA
GAAGCAGCGCAAGCAGTATCGCGCGCAGCGCGCTTTGCCGCGCGCGTCAG
TGGCGGCGCAGTGTCCGTTTCAAGCCACCTTCTCCGTCACGGAGGGGCAG
TTTACGGACAATACACCGAGCGACGACTCGCATCCGTTCGACCCGGATGG
GCCGGGCGTGCTGTCGGGACGCCAGCTGGATCCGAACGACGAGTATGTAG
AGATGAAGGGCGTGTTTGTGTCGGAGCAGTGTGACACCAAGATTTCGTTG
GTGTTGTCTACCTTGGATACGGAGACTTTGTTTGGGAAGGCTATTAACTA
CACCTTGCTTGTCACCGTCGTCGCTTTCATTCAGGTCATTGTTTTGATTC
GACAGATGGAGATGACGAGCACGCAAGCAGGTGCTAGACGGGTCTCGCTC
ATGACGGTGGGTTTGCAGGCTGTGGCCGATTCTTACTTGTGTCTGGGGCA
TTTGACTATGGGTATTGCCGTACAGCCGTTGTTTAATGCGTTTGCTACCG
CCGCTTTCTTCAAGTTTATTTGTTTCTCTATCTTTCTCATGCGCTGGATG
CTGTTGATTTGGAAGGCTCGTCGCCCGTCTGGCTTTTCCGAGGGGTGGGA
AGCTATGCGTCGCGAGCTGTCCATGCTGTATTCTCGCTTCTATGGTTCGT
TGCTCGTCGGTATTATTCTTTTGTATCAGCTTCAAAACCATCTGCGCTTC
TTCTTGTTTGCGCTGTATTCGTTCTGGGTTCCACAGATTATTCTCAACGC
TGTTGAGGATCACCGTCGTCCGCTTCTTCCCTCCTACATTATTGGCTCCA
CTGTCACTCGTCTTGCGATCCCTCTGTATTTCTGGGGATGTCCTCATAAC
TTTTTGCACATACAACCGCGACCGGGCTCCGCGATTGCGTTGGTCGTCTG
GCTTTTCACTCAAGCCATCATCTTACTTTCTCAGTACAAGTTTGGTCCGC
GCTGGTTTATTCCGAAAGAATTGCTGCCGGAAAAGTATGACTACTACCGC
CCCATCGTTCTGGATGATGAGACGGAAGATCTTGAGGCCGCCGCTGGCGA
GTGCCGCCCGCTCGTGGCTGGTGCACCAGCAGAACCTTTGCGGGAGTGTT
GTATTTGTATGGAACCGGTTCCTGTCAATTCGAGGGAACGAATGGTCACT
CCTTGTGATCATTTCTTTCATAGCGACTGTTTGGAGAAGTGGCTGGAGAT
AAGACTTGAATGTGCTTTGTGTCGCACGCCCGTTCCGCCACCTTGA
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