Ggra9090.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9090.t1
Unique Name	Ggra9090.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	582

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:166125..167870 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	71139.XP_010035771.1
PFAMs	zf-RING_2
Max annot lvl	35493\|Streptophyta
GOs	GO:0000003,GO:0000209,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009664,GO:0009791,GO:0009827,GO:0009845,GO:0009987,GO:0010154,GO:0010191,GO:0010393,GO:0010498,GO:0012505,GO:0016043,GO:0016567,GO:0016740,GO:0017144,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0036211,GO:0042545,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044464,GO:0045229,GO:0045488,GO:0048316,GO:0048363,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0080001,GO:0090351,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	2.4e-117
EggNOG OGs	COG5540@1\|root,KOG0828@2759\|Eukaryota,37I5S@33090\|Viridiplantae,3GBCE@35493\|Streptophyta
Description	Transmembrane E3 ubiquitin-protein ligase
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9090	Ggra9090	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 166125..167870 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9090.t1.stop1	Ggra9090.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 166125..166127 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9090.t1.CDS1	Ggra9090.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 166125..167870 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9090.t1.exon1	Ggra9090.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 166125..167870 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9090.t1.start1	Ggra9090.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 167868..167870 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9090.t1	Ggra9090.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 166125..167870 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:166125..167870-
coding sequence from alignment at tig00000176_pilon:166125..167870-

mRNA sequence

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp
MRSQRATTPCIRQLWLPLLLAAAALHAAAAASSAAAPHSFPRNLRRLYDG
SWESTQLFPNASFHNRAGFALLTAENHRTAFSQATNLVRAELLVRDGAYR
TQRDLSLNMLGLYDQPSGTVVLVGDVLFDEVPAVLHRLYRVYISTPHVLP
LNVSEARFVAALSPSFQKQRKQYRAQRALPRASVAAQCPFQATFSVTEGQ
FTDNTPSDDSHPFDPDGPGVLSGRQLDPNDEYVEMKGVFVSEQCDTKISL
VLSTLDTETLFGKAINYTLLVTVVAFIQVIVLIRQMEMTSTQAGARRVSL
MTVGLQAVADSYLCLGHLTMGIAVQPLFNAFATAAFFKFICFSIFLMRWM
LLIWKARRPSGFSEGWEAMRRELSMLYSRFYGSLLVGIILLYQLQNHLRF
FLFALYSFWVPQIILNAVEDHRRPLLPSYIIGSTVTRLAIPLYFWGCPHN
FLHIQPRPGSAIALVVWLFTQAIILLSQYKFGPRWFIPKELLPEKYDYYR
PIVLDDETEDLEAAAGECRPLVAGAPAEPLRECCICMEPVPVNSRERMVT
PCDHFFHSDCLEKWLEIRLECALCRTPVPPP*

spliced messenger RNA

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000176_pilon:166125..167870- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCACAGCGCGCCACCACGCCGTGCATCCGCCAACTATGGCTGCC
GCTGCTGCTCGCCGCCGCCGCGCTCCACGCCGCCGCCGCCGCCTCCAGCG
CCGCCGCCCCGCACTCCTTCCCGCGCAACCTGCGCCGCCTGTACGACGGC
TCGTGGGAATCCACGCAGCTGTTCCCCAACGCGTCGTTCCACAACCGCGC
CGGCTTCGCGCTGCTCACGGCGGAGAACCATCGCACCGCCTTCTCGCAGG
CCACCAACCTCGTGCGCGCCGAGCTGCTCGTCAGGGATGGCGCTTATCGC
ACGCAGCGCGACCTCTCGCTCAACATGCTGGGGCTGTATGACCAGCCTTC
TGGCACCGTTGTTCTGGTGGGCGACGTGCTGTTTGACGAGGTGCCTGCCG
TGCTGCACAGGTTGTATCGCGTGTATATCAGTACCCCTCATGTGTTGCCG
CTCAACGTGTCGGAGGCACGCTTTGTGGCCGCGCTCTCGCCCTCGTTTCA
GAAGCAGCGCAAGCAGTATCGCGCGCAGCGCGCTTTGCCGCGCGCGTCAG
TGGCGGCGCAGTGTCCGTTTCAAGCCACCTTCTCCGTCACGGAGGGGCAG
TTTACGGACAATACACCGAGCGACGACTCGCATCCGTTCGACCCGGATGG
GCCGGGCGTGCTGTCGGGACGCCAGCTGGATCCGAACGACGAGTATGTAG
AGATGAAGGGCGTGTTTGTGTCGGAGCAGTGTGACACCAAGATTTCGTTG
GTGTTGTCTACCTTGGATACGGAGACTTTGTTTGGGAAGGCTATTAACTA
CACCTTGCTTGTCACCGTCGTCGCTTTCATTCAGGTCATTGTTTTGATTC
GACAGATGGAGATGACGAGCACGCAAGCAGGTGCTAGACGGGTCTCGCTC
ATGACGGTGGGTTTGCAGGCTGTGGCCGATTCTTACTTGTGTCTGGGGCA
TTTGACTATGGGTATTGCCGTACAGCCGTTGTTTAATGCGTTTGCTACCG
CCGCTTTCTTCAAGTTTATTTGTTTCTCTATCTTTCTCATGCGCTGGATG
CTGTTGATTTGGAAGGCTCGTCGCCCGTCTGGCTTTTCCGAGGGGTGGGA
AGCTATGCGTCGCGAGCTGTCCATGCTGTATTCTCGCTTCTATGGTTCGT
TGCTCGTCGGTATTATTCTTTTGTATCAGCTTCAAAACCATCTGCGCTTC
TTCTTGTTTGCGCTGTATTCGTTCTGGGTTCCACAGATTATTCTCAACGC
TGTTGAGGATCACCGTCGTCCGCTTCTTCCCTCCTACATTATTGGCTCCA
CTGTCACTCGTCTTGCGATCCCTCTGTATTTCTGGGGATGTCCTCATAAC
TTTTTGCACATACAACCGCGACCGGGCTCCGCGATTGCGTTGGTCGTCTG
GCTTTTCACTCAAGCCATCATCTTACTTTCTCAGTACAAGTTTGGTCCGC
GCTGGTTTATTCCGAAAGAATTGCTGCCGGAAAAGTATGACTACTACCGC
CCCATCGTTCTGGATGATGAGACGGAAGATCTTGAGGCCGCCGCTGGCGA
GTGCCGCCCGCTCGTGGCTGGTGCACCAGCAGAACCTTTGCGGGAGTGTT
GTATTTGTATGGAACCGGTTCCTGTCAATTCGAGGGAACGAATGGTCACT
CCTTGTGATCATTTCTTTCATAGCGACTGTTTGGAGAAGTGGCTGGAGAT
AAGACTTGAATGTGCTTTGTGTCGCACGCCCGTTCCGCCACCTTGA

protein sequence of Ggra9090.t1

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=582bp
MRSQRATTPCIRQLWLPLLLAAAALHAAAAASSAAAPHSFPRNLRRLYDG
SWESTQLFPNASFHNRAGFALLTAENHRTAFSQATNLVRAELLVRDGAYR
TQRDLSLNMLGLYDQPSGTVVLVGDVLFDEVPAVLHRLYRVYISTPHVLP
LNVSEARFVAALSPSFQKQRKQYRAQRALPRASVAAQCPFQATFSVTEGQ
FTDNTPSDDSHPFDPDGPGVLSGRQLDPNDEYVEMKGVFVSEQCDTKISL
VLSTLDTETLFGKAINYTLLVTVVAFIQVIVLIRQMEMTSTQAGARRVSL
MTVGLQAVADSYLCLGHLTMGIAVQPLFNAFATAAFFKFICFSIFLMRWM
LLIWKARRPSGFSEGWEAMRRELSMLYSRFYGSLLVGIILLYQLQNHLRF
FLFALYSFWVPQIILNAVEDHRRPLLPSYIIGSTVTRLAIPLYFWGCPHN
FLHIQPRPGSAIALVVWLFTQAIILLSQYKFGPRWFIPKELLPEKYDYYR
PIVLDDETEDLEAAAGECRPLVAGAPAEPLRECCICMEPVPVNSRERMVT
PCDHFFHSDCLEKWLEIRLECALCRTPVPPP*

mRNA from alignment at tig00000176_pilon:166125..167870-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000176_pilon:166125..167870- (Gracilaria gracilis GNS1m male)
ATGCGCTCACAGCGCGCCACCACGCCGTGCATCCGCCAACTATGGCTGCC
GCTGCTGCTCGCCGCCGCCGCGCTCCACGCCGCCGCCGCCGCCTCCAGCG
CCGCCGCCCCGCACTCCTTCCCGCGCAACCTGCGCCGCCTGTACGACGGC
TCGTGGGAATCCACGCAGCTGTTCCCCAACGCGTCGTTCCACAACCGCGC
CGGCTTCGCGCTGCTCACGGCGGAGAACCATCGCACCGCCTTCTCGCAGG
CCACCAACCTCGTGCGCGCCGAGCTGCTCGTCAGGGATGGCGCTTATCGC
ACGCAGCGCGACCTCTCGCTCAACATGCTGGGGCTGTATGACCAGCCTTC
TGGCACCGTTGTTCTGGTGGGCGACGTGCTGTTTGACGAGGTGCCTGCCG
TGCTGCACAGGTTGTATCGCGTGTATATCAGTACCCCTCATGTGTTGCCG
CTCAACGTGTCGGAGGCACGCTTTGTGGCCGCGCTCTCGCCCTCGTTTCA
GAAGCAGCGCAAGCAGTATCGCGCGCAGCGCGCTTTGCCGCGCGCGTCAG
TGGCGGCGCAGTGTCCGTTTCAAGCCACCTTCTCCGTCACGGAGGGGCAG
TTTACGGACAATACACCGAGCGACGACTCGCATCCGTTCGACCCGGATGG
GCCGGGCGTGCTGTCGGGACGCCAGCTGGATCCGAACGACGAGTATGTAG
AGATGAAGGGCGTGTTTGTGTCGGAGCAGTGTGACACCAAGATTTCGTTG
GTGTTGTCTACCTTGGATACGGAGACTTTGTTTGGGAAGGCTATTAACTA
CACCTTGCTTGTCACCGTCGTCGCTTTCATTCAGGTCATTGTTTTGATTC
GACAGATGGAGATGACGAGCACGCAAGCAGGTGCTAGACGGGTCTCGCTC
ATGACGGTGGGTTTGCAGGCTGTGGCCGATTCTTACTTGTGTCTGGGGCA
TTTGACTATGGGTATTGCCGTACAGCCGTTGTTTAATGCGTTTGCTACCG
CCGCTTTCTTCAAGTTTATTTGTTTCTCTATCTTTCTCATGCGCTGGATG
CTGTTGATTTGGAAGGCTCGTCGCCCGTCTGGCTTTTCCGAGGGGTGGGA
AGCTATGCGTCGCGAGCTGTCCATGCTGTATTCTCGCTTCTATGGTTCGT
TGCTCGTCGGTATTATTCTTTTGTATCAGCTTCAAAACCATCTGCGCTTC
TTCTTGTTTGCGCTGTATTCGTTCTGGGTTCCACAGATTATTCTCAACGC
TGTTGAGGATCACCGTCGTCCGCTTCTTCCCTCCTACATTATTGGCTCCA
CTGTCACTCGTCTTGCGATCCCTCTGTATTTCTGGGGATGTCCTCATAAC
TTTTTGCACATACAACCGCGACCGGGCTCCGCGATTGCGTTGGTCGTCTG
GCTTTTCACTCAAGCCATCATCTTACTTTCTCAGTACAAGTTTGGTCCGC
GCTGGTTTATTCCGAAAGAATTGCTGCCGGAAAAGTATGACTACTACCGC
CCCATCGTTCTGGATGATGAGACGGAAGATCTTGAGGCCGCCGCTGGCGA
GTGCCGCCCGCTCGTGGCTGGTGCACCAGCAGAACCTTTGCGGGAGTGTT
GTATTTGTATGGAACCGGTTCCTGTCAATTCGAGGGAACGAATGGTCACT
CCTTGTGATCATTTCTTTCATAGCGACTGTTTGGAGAAGTGGCTGGAGAT
AAGACTTGAATGTGCTTTGTGTCGCACGCCCGTTCCGCCACCTTGA

Coding sequence (CDS) from alignment at tig00000176_pilon:166125..167870-

>Ggra9090.t1 ID=Ggra9090.t1|Name=Ggra9090.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1746bp|location=Sequence derived from alignment at tig00000176_pilon:166125..167870- (Gracilaria gracilis GNS1m male)
ATGCGCTCACAGCGCGCCACCACGCCGTGCATCCGCCAACTATGGCTGCC
GCTGCTGCTCGCCGCCGCCGCGCTCCACGCCGCCGCCGCCGCCTCCAGCG
CCGCCGCCCCGCACTCCTTCCCGCGCAACCTGCGCCGCCTGTACGACGGC
TCGTGGGAATCCACGCAGCTGTTCCCCAACGCGTCGTTCCACAACCGCGC
CGGCTTCGCGCTGCTCACGGCGGAGAACCATCGCACCGCCTTCTCGCAGG
CCACCAACCTCGTGCGCGCCGAGCTGCTCGTCAGGGATGGCGCTTATCGC
ACGCAGCGCGACCTCTCGCTCAACATGCTGGGGCTGTATGACCAGCCTTC
TGGCACCGTTGTTCTGGTGGGCGACGTGCTGTTTGACGAGGTGCCTGCCG
TGCTGCACAGGTTGTATCGCGTGTATATCAGTACCCCTCATGTGTTGCCG
CTCAACGTGTCGGAGGCACGCTTTGTGGCCGCGCTCTCGCCCTCGTTTCA
GAAGCAGCGCAAGCAGTATCGCGCGCAGCGCGCTTTGCCGCGCGCGTCAG
TGGCGGCGCAGTGTCCGTTTCAAGCCACCTTCTCCGTCACGGAGGGGCAG
TTTACGGACAATACACCGAGCGACGACTCGCATCCGTTCGACCCGGATGG
GCCGGGCGTGCTGTCGGGACGCCAGCTGGATCCGAACGACGAGTATGTAG
AGATGAAGGGCGTGTTTGTGTCGGAGCAGTGTGACACCAAGATTTCGTTG
GTGTTGTCTACCTTGGATACGGAGACTTTGTTTGGGAAGGCTATTAACTA
CACCTTGCTTGTCACCGTCGTCGCTTTCATTCAGGTCATTGTTTTGATTC
GACAGATGGAGATGACGAGCACGCAAGCAGGTGCTAGACGGGTCTCGCTC
ATGACGGTGGGTTTGCAGGCTGTGGCCGATTCTTACTTGTGTCTGGGGCA
TTTGACTATGGGTATTGCCGTACAGCCGTTGTTTAATGCGTTTGCTACCG
CCGCTTTCTTCAAGTTTATTTGTTTCTCTATCTTTCTCATGCGCTGGATG
CTGTTGATTTGGAAGGCTCGTCGCCCGTCTGGCTTTTCCGAGGGGTGGGA
AGCTATGCGTCGCGAGCTGTCCATGCTGTATTCTCGCTTCTATGGTTCGT
TGCTCGTCGGTATTATTCTTTTGTATCAGCTTCAAAACCATCTGCGCTTC
TTCTTGTTTGCGCTGTATTCGTTCTGGGTTCCACAGATTATTCTCAACGC
TGTTGAGGATCACCGTCGTCCGCTTCTTCCCTCCTACATTATTGGCTCCA
CTGTCACTCGTCTTGCGATCCCTCTGTATTTCTGGGGATGTCCTCATAAC
TTTTTGCACATACAACCGCGACCGGGCTCCGCGATTGCGTTGGTCGTCTG
GCTTTTCACTCAAGCCATCATCTTACTTTCTCAGTACAAGTTTGGTCCGC
GCTGGTTTATTCCGAAAGAATTGCTGCCGGAAAAGTATGACTACTACCGC
CCCATCGTTCTGGATGATGAGACGGAAGATCTTGAGGCCGCCGCTGGCGA
GTGCCGCCCGCTCGTGGCTGGTGCACCAGCAGAACCTTTGCGGGAGTGTT
GTATTTGTATGGAACCGGTTCCTGTCAATTCGAGGGAACGAATGGTCACT
CCTTGTGATCATTTCTTTCATAGCGACTGTTTGGAGAAGTGGCTGGAGAT
AAGACTTGAATGTGCTTTGTGTCGCACGCCCGTTCCGCCACCTTGA