Ggra9018.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9018.t1
Unique NameGgra9018.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1165801..1166472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926559.JoomaDRAFT_1912
PFAMsNAD_binding_10
Max annot lvl976|Bacteroidetes
Evalue7.32e-15
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,4NMI5@976|Bacteroidetes,1IJ1D@117743|Flavobacteriia
DescriptionNmrA-like family
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9018Ggra9018Gracilaria gracilis GNS1m malegenetig00000860_pilon 1165801..1166472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9018.t1.stop1Ggra9018.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1165801..1165803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9018.t1.CDS1Ggra9018.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1165801..1166472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9018.t1.exon1Ggra9018.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1165801..1166472 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9018.t1.start1Ggra9018.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1166470..1166472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9018.t1Ggra9018.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1165801..1166472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9018.t1 ID=Ggra9018.t1|Name=Ggra9018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=224bp
MSTSILIIGANGRTGQKLIQAASAHESAPQIHAFVRNPDSLSPSLTSQCN
SVQKGDALNAEDVRNALLASNATHVVVAIGVPNDLSESSLRTDSAKAITE
ALGKLERKVKVVVLSSIGAGGTAIKIGFGIGMIVCAMLRNVLKDHDGQEE
CFSKSFENKEEDLLIVRPTSLTEGQGGAKLVTFDGQKKSPSSKTDRQDLA
EWIITQVCEDGDQFGHAVNVTRG*
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spliced messenger RNA

>Ggra9018.t1 ID=Ggra9018.t1|Name=Ggra9018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000860_pilon:1165801..1166472- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACATCCATCCTCATCATTGGTGCCAACGGGCGCACAGGACAGAA
ACTAATTCAAGCTGCATCTGCCCACGAGAGTGCGCCTCAAATTCATGCGT
TTGTCCGCAATCCAGACTCGCTTTCACCGTCCCTCACTTCACAATGTAAC
TCGGTACAGAAAGGTGATGCCCTGAATGCAGAGGACGTACGCAACGCGCT
CTTGGCATCAAACGCCACGCATGTCGTCGTGGCCATTGGCGTGCCTAACG
ATCTTTCTGAATCATCACTGCGTACAGACTCCGCAAAAGCAATCACCGAA
GCCCTTGGCAAGTTAGAACGCAAAGTTAAGGTTGTAGTTCTCTCAAGCAT
TGGCGCGGGCGGTACTGCAATCAAGATCGGATTCGGCATTGGAATGATTG
TTTGTGCTATGCTTCGAAATGTTCTCAAGGACCATGATGGCCAAGAGGAG
TGCTTTAGCAAATCTTTTGAGAACAAGGAGGAAGACTTGCTTATTGTGCG
ACCCACCAGCCTTACTGAAGGACAGGGAGGAGCGAAACTGGTCACGTTCG
ATGGTCAGAAGAAGTCTCCTAGTTCCAAAACGGACCGGCAAGATCTGGCT
GAATGGATTATTACACAGGTTTGCGAGGATGGGGATCAATTTGGACACGC
TGTCAATGTTACTCGCGGATAA
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protein sequence of Ggra9018.t1

>Ggra9018.t1 ID=Ggra9018.t1|Name=Ggra9018.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=224bp
MSTSILIIGANGRTGQKLIQAASAHESAPQIHAFVRNPDSLSPSLTSQCN
SVQKGDALNAEDVRNALLASNATHVVVAIGVPNDLSESSLRTDSAKAITE
ALGKLERKVKVVVLSSIGAGGTAIKIGFGIGMIVCAMLRNVLKDHDGQEE
CFSKSFENKEEDLLIVRPTSLTEGQGGAKLVTFDGQKKSPSSKTDRQDLA
EWIITQVCEDGDQFGHAVNVTRG*
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mRNA from alignment at tig00000860_pilon:1165801..1166472-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9018.t1 ID=Ggra9018.t1|Name=Ggra9018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000860_pilon:1165801..1166472- (Gracilaria gracilis GNS1m male)
ATGTCTACATCCATCCTCATCATTGGTGCCAACGGGCGCACAGGACAGAA
ACTAATTCAAGCTGCATCTGCCCACGAGAGTGCGCCTCAAATTCATGCGT
TTGTCCGCAATCCAGACTCGCTTTCACCGTCCCTCACTTCACAATGTAAC
TCGGTACAGAAAGGTGATGCCCTGAATGCAGAGGACGTACGCAACGCGCT
CTTGGCATCAAACGCCACGCATGTCGTCGTGGCCATTGGCGTGCCTAACG
ATCTTTCTGAATCATCACTGCGTACAGACTCCGCAAAAGCAATCACCGAA
GCCCTTGGCAAGTTAGAACGCAAAGTTAAGGTTGTAGTTCTCTCAAGCAT
TGGCGCGGGCGGTACTGCAATCAAGATCGGATTCGGCATTGGAATGATTG
TTTGTGCTATGCTTCGAAATGTTCTCAAGGACCATGATGGCCAAGAGGAG
TGCTTTAGCAAATCTTTTGAGAACAAGGAGGAAGACTTGCTTATTGTGCG
ACCCACCAGCCTTACTGAAGGACAGGGAGGAGCGAAACTGGTCACGTTCG
ATGGTCAGAAGAAGTCTCCTAGTTCCAAAACGGACCGGCAAGATCTGGCT
GAATGGATTATTACACAGGTTTGCGAGGATGGGGATCAATTTGGACACGC
TGTCAATGTTACTCGCGGATAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1165801..1166472-

>Ggra9018.t1 ID=Ggra9018.t1|Name=Ggra9018.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00000860_pilon:1165801..1166472- (Gracilaria gracilis GNS1m male)
ATGTCTACATCCATCCTCATCATTGGTGCCAACGGGCGCACAGGACAGAA
ACTAATTCAAGCTGCATCTGCCCACGAGAGTGCGCCTCAAATTCATGCGT
TTGTCCGCAATCCAGACTCGCTTTCACCGTCCCTCACTTCACAATGTAAC
TCGGTACAGAAAGGTGATGCCCTGAATGCAGAGGACGTACGCAACGCGCT
CTTGGCATCAAACGCCACGCATGTCGTCGTGGCCATTGGCGTGCCTAACG
ATCTTTCTGAATCATCACTGCGTACAGACTCCGCAAAAGCAATCACCGAA
GCCCTTGGCAAGTTAGAACGCAAAGTTAAGGTTGTAGTTCTCTCAAGCAT
TGGCGCGGGCGGTACTGCAATCAAGATCGGATTCGGCATTGGAATGATTG
TTTGTGCTATGCTTCGAAATGTTCTCAAGGACCATGATGGCCAAGAGGAG
TGCTTTAGCAAATCTTTTGAGAACAAGGAGGAAGACTTGCTTATTGTGCG
ACCCACCAGCCTTACTGAAGGACAGGGAGGAGCGAAACTGGTCACGTTCG
ATGGTCAGAAGAAGTCTCCTAGTTCCAAAACGGACCGGCAAGATCTGGCT
GAATGGATTATTACACAGGTTTGCGAGGATGGGGATCAATTTGGACACGC
TGTCAATGTTACTCGCGGATAA
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