Ggra8648.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8648.t1
Unique NameGgra8648.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:270536..271393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8648Ggra8648Gracilaria gracilis GNS1m malegenetig00000855_pilon 270536..271393 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8648.t1.stop1Ggra8648.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000855_pilon 270536..270538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8648.t1.CDS1Ggra8648.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000855_pilon 270536..271393 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8648.t1.exon1Ggra8648.t1.exon1Gracilaria gracilis GNS1m maleexontig00000855_pilon 270536..271393 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8648.t1.start1Ggra8648.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000855_pilon 271391..271393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8648.t1Ggra8648.t1Gracilaria gracilis GNS1m malepolypeptidetig00000855_pilon 270536..271393 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8648.t1 ID=Ggra8648.t1|Name=Ggra8648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=286bp
MVNKVSRFLVILAVLCFISSAIAAPPLSVSDLMEFLEGSQDLEPTPEEPD
STPTVEPPTSDPNSIIAPSSYQAANISRSRLAYNPTPAVATVVNLPRSRS
VNISVTLSGSVDLEGVLASHIETEIEKIVANSSWRIKDFFNKEKEALQER
AGDRYFFFFQAAANFGYSDNRETREMMQTVEFEHFTNQSALMLDSCNQHD
LKGSYSVRLEIASIGRPRRLSLKPYLYFPQVTLTSGKIMKVVANSSRLGI
ADQYGNIFDDIHHVELSNADKLGSNGACANSLDSI*
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spliced messenger RNA

>Ggra8648.t1 ID=Ggra8648.t1|Name=Ggra8648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000855_pilon:270536..271393- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAACAAAGTTTCAAGGTTCCTGGTCATATTGGCCGTATTATGTTT
TATCTCTTCTGCTATCGCAGCGCCGCCGCTCTCAGTTTCAGATCTTATGG
AGTTTCTCGAAGGGAGCCAAGACCTCGAACCCACTCCGGAAGAACCGGAC
TCTACACCCACAGTTGAGCCACCCACAAGTGACCCCAACTCAATAATTGC
ACCCAGTTCTTACCAAGCTGCGAACATCTCGAGATCACGATTGGCTTACA
ATCCTACGCCGGCAGTAGCTACAGTTGTGAACCTACCAAGAAGTAGGAGC
GTCAACATCTCCGTCACTTTATCAGGATCTGTAGACCTTGAAGGCGTCTT
GGCTAGTCATATCGAAACTGAAATCGAGAAAATTGTGGCAAACTCGTCCT
GGCGGATTAAGGACTTTTTCAACAAAGAAAAAGAAGCACTTCAAGAAAGG
GCCGGTGATAGATACTTCTTCTTCTTCCAGGCAGCGGCTAACTTTGGGTA
TTCAGACAACAGAGAAACGAGAGAAATGATGCAGACGGTCGAATTTGAGC
ACTTCACAAATCAGAGCGCTTTGATGCTCGATTCATGCAATCAACATGAT
TTGAAAGGAAGCTATTCAGTCCGACTTGAGATAGCATCCATAGGCAGGCC
TAGACGTCTATCGCTTAAGCCATACCTGTATTTCCCTCAGGTGACTTTGA
CATCCGGCAAAATTATGAAAGTGGTTGCAAATTCTTCTCGGCTCGGCATT
GCTGATCAGTATGGGAACATATTCGATGACATTCATCACGTGGAATTAAG
TAACGCCGATAAATTGGGTTCTAATGGGGCATGCGCAAACTCTCTCGATT
CTATTTGA
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protein sequence of Ggra8648.t1

>Ggra8648.t1 ID=Ggra8648.t1|Name=Ggra8648.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=286bp
MVNKVSRFLVILAVLCFISSAIAAPPLSVSDLMEFLEGSQDLEPTPEEPD
STPTVEPPTSDPNSIIAPSSYQAANISRSRLAYNPTPAVATVVNLPRSRS
VNISVTLSGSVDLEGVLASHIETEIEKIVANSSWRIKDFFNKEKEALQER
AGDRYFFFFQAAANFGYSDNRETREMMQTVEFEHFTNQSALMLDSCNQHD
LKGSYSVRLEIASIGRPRRLSLKPYLYFPQVTLTSGKIMKVVANSSRLGI
ADQYGNIFDDIHHVELSNADKLGSNGACANSLDSI*
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mRNA from alignment at tig00000855_pilon:270536..271393-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8648.t1 ID=Ggra8648.t1|Name=Ggra8648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000855_pilon:270536..271393- (Gracilaria gracilis GNS1m male)
ATGGTGAACAAAGTTTCAAGGTTCCTGGTCATATTGGCCGTATTATGTTT
TATCTCTTCTGCTATCGCAGCGCCGCCGCTCTCAGTTTCAGATCTTATGG
AGTTTCTCGAAGGGAGCCAAGACCTCGAACCCACTCCGGAAGAACCGGAC
TCTACACCCACAGTTGAGCCACCCACAAGTGACCCCAACTCAATAATTGC
ACCCAGTTCTTACCAAGCTGCGAACATCTCGAGATCACGATTGGCTTACA
ATCCTACGCCGGCAGTAGCTACAGTTGTGAACCTACCAAGAAGTAGGAGC
GTCAACATCTCCGTCACTTTATCAGGATCTGTAGACCTTGAAGGCGTCTT
GGCTAGTCATATCGAAACTGAAATCGAGAAAATTGTGGCAAACTCGTCCT
GGCGGATTAAGGACTTTTTCAACAAAGAAAAAGAAGCACTTCAAGAAAGG
GCCGGTGATAGATACTTCTTCTTCTTCCAGGCAGCGGCTAACTTTGGGTA
TTCAGACAACAGAGAAACGAGAGAAATGATGCAGACGGTCGAATTTGAGC
ACTTCACAAATCAGAGCGCTTTGATGCTCGATTCATGCAATCAACATGAT
TTGAAAGGAAGCTATTCAGTCCGACTTGAGATAGCATCCATAGGCAGGCC
TAGACGTCTATCGCTTAAGCCATACCTGTATTTCCCTCAGGTGACTTTGA
CATCCGGCAAAATTATGAAAGTGGTTGCAAATTCTTCTCGGCTCGGCATT
GCTGATCAGTATGGGAACATATTCGATGACATTCATCACGTGGAATTAAG
TAACGCCGATAAATTGGGTTCTAATGGGGCATGCGCAAACTCTCTCGATT
CTATTTGA
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Coding sequence (CDS) from alignment at tig00000855_pilon:270536..271393-

>Ggra8648.t1 ID=Ggra8648.t1|Name=Ggra8648.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000855_pilon:270536..271393- (Gracilaria gracilis GNS1m male)
ATGGTGAACAAAGTTTCAAGGTTCCTGGTCATATTGGCCGTATTATGTTT
TATCTCTTCTGCTATCGCAGCGCCGCCGCTCTCAGTTTCAGATCTTATGG
AGTTTCTCGAAGGGAGCCAAGACCTCGAACCCACTCCGGAAGAACCGGAC
TCTACACCCACAGTTGAGCCACCCACAAGTGACCCCAACTCAATAATTGC
ACCCAGTTCTTACCAAGCTGCGAACATCTCGAGATCACGATTGGCTTACA
ATCCTACGCCGGCAGTAGCTACAGTTGTGAACCTACCAAGAAGTAGGAGC
GTCAACATCTCCGTCACTTTATCAGGATCTGTAGACCTTGAAGGCGTCTT
GGCTAGTCATATCGAAACTGAAATCGAGAAAATTGTGGCAAACTCGTCCT
GGCGGATTAAGGACTTTTTCAACAAAGAAAAAGAAGCACTTCAAGAAAGG
GCCGGTGATAGATACTTCTTCTTCTTCCAGGCAGCGGCTAACTTTGGGTA
TTCAGACAACAGAGAAACGAGAGAAATGATGCAGACGGTCGAATTTGAGC
ACTTCACAAATCAGAGCGCTTTGATGCTCGATTCATGCAATCAACATGAT
TTGAAAGGAAGCTATTCAGTCCGACTTGAGATAGCATCCATAGGCAGGCC
TAGACGTCTATCGCTTAAGCCATACCTGTATTTCCCTCAGGTGACTTTGA
CATCCGGCAAAATTATGAAAGTGGTTGCAAATTCTTCTCGGCTCGGCATT
GCTGATCAGTATGGGAACATATTCGATGACATTCATCACGTGGAATTAAG
TAACGCCGATAAATTGGGTTCTAATGGGGCATGCGCAAACTCTCTCGATT
CTATTTGA
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